Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA233G0017 Erigeron canadensis HOM05D004676 ORTHO05D005661 1.5e-121 439.9 279 100.0
ECA233G0785 Erigeron canadensis HOM05D004676 ORTHO05D005661 3.2e-68 262.7 148 95.9
ECA233G5350 Erigeron canadensis HOM05D004676 ORTHO05D005661 2.4e-55 219.9 235 66.4
HanXRQChr01g0009481 Helianthus annuus HOM05D004676 ORTHO05D005661 8.0e-43 178.3 179 63.7
Hma1.2p1_0418F.1_g149200 Hydrangea macrophylla HOM05D004676 ORTHO05D005661 1.3e-37 161.0 199 55.8
Sabra01G0116300 Salix brachista HOM05D004676 ORTHO05D005661 2.3e-37 160.2 188 53.2
ECA233G4946 Erigeron canadensis HOM05D004676 ORTHO05D005661 2.9e-37 159.8 209 63.2
Sabra01G0117800 Salix brachista HOM05D004676 ORTHO05D005661 1.1e-36 157.9 188 52.7
ECA248G3797 Erigeron canadensis HOM05D004676 ORTHO05D005661 1.9e-36 157.1 174 59.2
Manes.02G133000 Manihot esculenta HOM05D004676 ORTHO05D005661 4.3e-36 156.0 173 53.2
Potri.001G148000 Populus trichocarpa HOM05D004676 ORTHO05D005661 1.6e-35 154.1 174 56.9
Dinv12426 Davidia involucrata HOM05D004676 ORTHO05D005661 6.1e-35 152.1 179 55.9
Lsat_1_v5_gn_5_170600 Lactuca sativa HOM05D004676 ORTHO05D005661 1.0e-34 151.4 144 61.1
Lj1P153T22 Lonicera japonica HOM05D004676 ORTHO05D005661 2.3e-34 150.2 96 79.2
Atru.chr3.3906 Acer truncatum HOM05D004676 ORTHO05D005661 3.0e-34 149.8 189 51.9
Rhsim01G0227600 Rhododendron simsii HOM05D004676 ORTHO05D005661 3.0e-34 149.8 182 56.0
Cpa.g.sc161.42 Carica papaya HOM05D004676 ORTHO05D005661 5.2e-34 149.1 96 77.1
TAR633G1457 Trochodendron aralioides HOM05D004676 ORTHO05D005661 8.9e-34 148.3 201 51.2
vmacro05212 Vaccinium macrocarpon HOM05D004676 ORTHO05D005661 2.0e-33 147.1 96 79.2
MD03G1093300 Malus domestica HOM05D004676 ORTHO05D005661 3.4e-33 146.4 97 75.3
SHI01165 Sapria himalayana HOM05D004676 ORTHO05D005661 3.4e-33 146.4 191 49.7
Nn1g00565 Nelumbo nucifera HOM05D004676 ORTHO05D005661 4.4e-33 146.0 187 53.5
Thecc.09G321600 Theobroma cacao HOM05D004676 ORTHO05D005661 4.4e-33 146.0 177 55.9
Cpa.g.sc81.149 Carica papaya HOM05D004676 ORTHO05D005661 5.7e-33 145.6 188 53.2
MD11G1108100 Malus domestica HOM05D004676 ORTHO05D005661 7.5e-33 145.2 97 75.3
Manes.01G173800 Manihot esculenta HOM05D004676 ORTHO05D005661 7.5e-33 145.2 142 57.0
CANSAT21G2535 Cannabis sativa HOM05D004676 ORTHO05D005661 9.8e-33 144.8 97 73.2
Eucgr.E01963 Eucalyptus grandis HOM05D004676 ORTHO05D005661 9.8e-33 144.8 96 77.1
Prupe.6G077300 Prunus persica HOM05D004676 ORTHO05D005661 9.8e-33 144.8 202 51.0
CsaV3_6G016860 Cucumis sativus L. HOM05D004676 ORTHO05D005661 1.3e-32 144.4 196 52.6
CiPaw.13G094200 Carya illinoinensis HOM05D004676 ORTHO05D005661 1.7e-32 144.1 190 52.6
PGR119G2251 Punica granatum HOM05D004676 ORTHO05D005661 1.7e-32 144.1 96 76.0
unitig_747.g22032 Utricularia gibba HOM05D004676 ORTHO05D005661 2.2e-32 143.7 194 51.0
Eucgr.E01882 Eucalyptus grandis HOM05D004676 ORTHO05D005661 2.9e-32 143.3 96 76.0
Haze_24097 Corylus avellana HOM05D004676 ORTHO05D005661 3.7e-32 142.9 186 53.2
Oeu019194.1 Olea europaea HOM05D004676 ORTHO05D005661 3.7e-32 142.9 182 54.4
SGA_v2.0_scaffold154G37155 Striga asiatica HOM05D004676 ORTHO05D005661 3.7e-32 142.9 187 54.5
Thecc.09G321800 Theobroma cacao HOM05D004676 ORTHO05D005661 3.7e-32 142.9 197 52.8
unitig_0.g1557 Utricularia gibba HOM05D004676 ORTHO05D005661 4.9e-32 142.5 190 51.6
COL.COLO4_18509 Corchorus olitorius HOM05D004676 ORTHO05D005661 1.1e-31 141.4 96 74.0
Duzib168G2248 Durio zibethinus HOM05D004676 ORTHO05D005661 1.4e-31 141.0 96 74.0
ATR0733G034 Amborella trichopoda HOM05D004676 ORTHO05D005661 1.8e-31 140.6 96 72.9
ClCG02G020150 Citrullus lanatus HOM05D004676 ORTHO05D005661 1.8e-31 140.6 96 71.9
Haze_12047 Corylus avellana HOM05D004676 ORTHO05D005661 1.8e-31 140.6 187 54.0
MELO3C025917.2 Cucumis melo HOM05D004676 ORTHO05D005661 1.8e-31 140.6 96 71.9
Gohir.A07G098600 Gossypium hirsutum HOM05D004676 ORTHO05D005661 2.4e-31 140.2 178 55.1
Gorai.001G110800 Gossypium raimondii HOM05D004676 ORTHO05D005661 2.4e-31 140.2 178 55.1
TWI79G0464 Tripterygium wilfordii HOM05D004676 ORTHO05D005661 2.4e-31 140.2 90 78.9
Gohir.D07G102900 Gossypium hirsutum HOM05D004676 ORTHO05D005661 3.2e-31 139.8 201 51.7
TWI75G1679 Tripterygium wilfordii HOM05D004676 ORTHO05D005661 3.2e-31 139.8 90 78.9
RcHm_v2.0_Chr5g0064541 Rosa chinensis HOM05D004676 ORTHO05D005661 4.1e-31 139.4 96 71.9
Actinidia23939 Actinidia chinensis HOM05D004676 ORTHO05D005661 5.4e-31 139.0 195 50.8
Actinidia34405 Actinidia chinensis HOM05D004676 ORTHO05D005661 5.4e-31 139.0 174 51.7
Lalb_Chr06g0163861 Lupinus albus HOM05D004676 ORTHO05D005661 1.6e-30 137.5 183 48.1
Sc21g0005490 Simmondsia chinensis HOM05D004676 ORTHO05D005661 2.7e-30 136.7 184 52.2
CiPaw.14G068300 Carya illinoinensis HOM05D004676 ORTHO05D005661 3.5e-30 136.3 96 70.8
Aqoxy7G03598 Aquilegia oxysepala HOM05D004676 ORTHO05D005661 4.6e-30 136.0 99 71.7
MBI14_g16284_MAGBIO Magnolia biondii HOM05D004676 ORTHO05D005661 4.6e-30 136.0 194 51.5
Lalb_Chr02g0143571 Lupinus albus HOM05D004676 ORTHO05D005661 5.9e-30 135.6 191 48.2
Psat0s2898g0040 Pisum sativum HOM05D004676 ORTHO05D005661 7.8e-30 135.2 183 50.3
Cc01_g12890 Coffea canephora HOM05D004676 ORTHO05D005661 1.0e-29 134.8 190 50.5
Migut.D02100 Erythranthe guttata HOM05D004676 ORTHO05D005661 1.0e-29 134.8 183 50.8
Glyma.20G104700 Glycine max HOM05D004676 ORTHO05D005661 1.0e-29 134.8 201 49.8
Oeu051436.2 Olea europaea HOM05D004676 ORTHO05D005661 1.0e-29 134.8 96 71.9
QL09p008735 Quercus lobata HOM05D004676 ORTHO05D005661 1.0e-29 134.8 155 52.9
TPR.G18864 Trifolium pratense HOM05D004676 ORTHO05D005661 1.0e-29 134.8 187 50.3
Cfa011505 Carpinus fangiana HOM05D004676 ORTHO05D005661 1.3e-29 134.4 155 50.3
Peaxi162Scf00045g00052 Petunia axillaris HOM05D004676 ORTHO05D005661 1.7e-29 134.0 185 51.9
THA.LOC104826325 Tarenaya hassleriana HOM05D004676 ORTHO05D005661 1.7e-29 134.0 185 51.9
Migut.L00671 Erythranthe guttata HOM05D004676 ORTHO05D005661 3.0e-29 133.3 185 50.8
Migut.L00698 Erythranthe guttata HOM05D004676 ORTHO05D005661 3.9e-29 132.9 186 50.5
FAN25G1996 Fragaria x ananassa HOM05D004676 ORTHO05D005661 3.9e-29 132.9 183 51.4
TAR677G0002 Trochodendron aralioides HOM05D004676 ORTHO05D005661 3.9e-29 132.9 178 49.4
BcaB02g10212 Brassica carinata HOM05D004676 ORTHO05D005661 5.0e-29 132.5 96 71.9
Ciclev10028807m.g Citrus clementina HOM05D004676 ORTHO05D005661 5.0e-29 132.5 193 43.5
FAN11G0391 Fragaria x ananassa HOM05D004676 ORTHO05D005661 5.0e-29 132.5 183 51.4
FAN16G2805 Fragaria x ananassa HOM05D004676 ORTHO05D005661 6.6e-29 132.1 98 68.4
FAN21G2159 Fragaria x ananassa HOM05D004676 ORTHO05D005661 6.6e-29 132.1 98 69.4
Sed0011846 Sechium edule HOM05D004676 ORTHO05D005661 6.6e-29 132.1 97 70.1
Hund18907 Selenicereus undatus HOM05D004676 ORTHO05D005661 8.6e-29 131.7 190 51.6
TAR100G0004 Trochodendron aralioides HOM05D004676 ORTHO05D005661 8.6e-29 131.7 186 48.9
SEGI_40255 Sequoiadendron giganteum HOM05D004676 ORTHO05D005661 1.1e-28 131.3 187 47.1
Glyma.10G284600 Glycine max HOM05D004676 ORTHO05D005661 1.5e-28 131.0 199 44.7
SGA_v2.0_scaffold47G17549 Striga asiatica HOM05D004676 ORTHO05D005661 1.5e-28 131.0 200 49.0
CDE07G0255 Ceratophyllum demersum HOM05D004676 ORTHO05D005661 2.5e-28 130.2 153 52.9
CAN.G137.34 Capsicum annuum HOM05D004676 ORTHO05D005661 3.3e-28 129.8 179 50.8
Nitab4.5_0005880g0060 Nicotiana tabacum HOM05D004676 ORTHO05D005661 3.3e-28 129.8 185 51.9
DCAR_025381 Daucus carota HOM05D004676 ORTHO05D005661 4.3e-28 129.4 158 51.3
Phvul.007G016200 Phaseolus vulgaris HOM05D004676 ORTHO05D005661 4.3e-28 129.4 181 50.3
Aa31LG5G7310 Aethionema arabicum HOM05D004676 ORTHO05D005661 5.6e-28 129.0 96 71.9
AUR62005169 Chenopodium quinoa HOM05D004676 ORTHO05D005661 5.6e-28 129.0 96 71.9
Nitab4.5_0003154g0010 Nicotiana tabacum HOM05D004676 ORTHO05D005661 5.6e-28 129.0 183 51.4
THA.LOC104800662 Tarenaya hassleriana HOM05D004676 ORTHO05D005661 5.6e-28 129.0 176 51.1
CARHR122080 Cardamine hirsuta HOM05D004676 ORTHO05D005661 7.3e-28 128.6 109 65.1
AUR62000799 Chenopodium quinoa HOM05D004676 ORTHO05D005661 7.3e-28 128.6 96 71.9
FvH4_3g36111 Fragaria vesca HOM05D004676 ORTHO05D005661 7.3e-28 128.6 183 50.8
Nitab4.5_0001424g0070 Nicotiana tabacum HOM05D004676 ORTHO05D005661 7.3e-28 128.6 148 54.7
PGSC0003DMG400018489 Solanum tuberosum HOM05D004676 ORTHO05D005661 7.3e-28 128.6 96 68.8
VMungo0720G1898 Vigna mungo HOM05D004676 ORTHO05D005661 7.3e-28 128.6 97 68.0
AL4G23440 Arabidopsis lyrata HOM05D004676 ORTHO05D005661 9.5e-28 128.3 109 65.1
Carub.0004s0990 Capsella rubella HOM05D004676 ORTHO05D005661 9.5e-28 128.3 109 65.1
Solyc08g005450.3 Solanum lycopersicum HOM05D004676 ORTHO05D005661 9.5e-28 128.3 100 68.0
Sopen08g001490 Solanum pennellii HOM05D004676 ORTHO05D005661 9.5e-28 128.3 100 68.0
Ah.04g160390 Amaranthus hybridus HOM05D004676 ORTHO05D005661 1.2e-27 127.9 96 70.8
Eucgr.J02052 Eucalyptus grandis HOM05D004676 ORTHO05D005661 1.2e-27 127.9 96 67.7
Lj5g0019317 Lotus japonicus HOM05D004676 ORTHO05D005661 1.2e-27 127.9 191 44.0
Sp4g11720 Schrenkiella parvula HOM05D004676 ORTHO05D005661 1.2e-27 127.9 96 70.8
A07p19390 Brassica napus HOM05D004676 ORTHO05D005661 1.6e-27 127.5 96 70.8
CDE04G1893 Ceratophyllum demersum HOM05D004676 ORTHO05D005661 1.6e-27 127.5 156 51.3
BcaC02g11024 Brassica carinata HOM05D004676 ORTHO05D005661 2.1e-27 127.1 96 70.8
C04p22070 Brassica napus HOM05D004676 ORTHO05D005661 2.1e-27 127.1 96 70.8
BolC4t23730H Brassica oleracea HOM05D004676 ORTHO05D005661 2.1e-27 127.1 96 70.8
PSO151G0082 Papaver somniferum HOM05D004676 ORTHO05D005661 2.1e-27 127.1 101 68.3
PSO339G5531 Papaver somniferum HOM05D004676 ORTHO05D005661 2.1e-27 127.1 101 68.3
Ca_11220_v3 Cicer arietinum L. HOM05D004676 ORTHO05D005661 2.8e-27 126.7 188 49.5
BolC4t27336H Brassica oleracea HOM05D004676 ORTHO05D005661 3.6e-27 126.3 96 69.8
DCAR_024536 Daucus carota HOM05D004676 ORTHO05D005661 3.6e-27 126.3 150 52.0
TAR383G0008 Trochodendron aralioides HOM05D004676 ORTHO05D005661 3.6e-27 126.3 96 67.7
TAR455G0002 Trochodendron aralioides HOM05D004676 ORTHO05D005661 3.6e-27 126.3 96 67.7
TAR588G0001 Trochodendron aralioides HOM05D004676 ORTHO05D005661 3.6e-27 126.3 96 67.7
AT2G28910 Arabidopsis thaliana HOM05D004676 ORTHO05D005661 1.4e-26 124.4 192 50.5
arahy.Tifrunner.gnm1.ann1.ID2MIU Arachis hypogaea HOM05D004676 ORTHO05D005661 1.8e-26 124.0 156 48.1
Ca_09918_v3 Cicer arietinum L. HOM05D004676 ORTHO05D005661 2.3e-26 123.6 155 47.7
HPP92_003389 Vanilla planifolia HOM05D004676 ORTHO05D005661 3.1e-26 123.2 100 65.0
EL10Ac4g09397 Beta vulgaris HOM05D004676 ORTHO05D005661 6.8e-26 122.1 141 51.1
Pp3c8_12040 Physcomitrium patens HOM05D004676 ORTHO05D005661 6.8e-26 122.1 195 43.6
AagrBONN_evm.TU.Sc2ySwM_228.4612 Anthoceros agrestis HOM05D004676 ORTHO05D005661 3.4e-25 119.8 105 62.9
A04p05090 Brassica napus HOM05D004676 ORTHO05D005661 1.7e-24 117.5 96 66.7
A04p21940 Brassica napus HOM05D004676 ORTHO05D005661 1.7e-24 117.5 96 66.7
BraA04t17761Z Brassica rapa HOM05D004676 ORTHO05D005661 1.7e-24 117.5 96 66.7
RcHm_v2.0_Chr5g0064551 Rosa chinensis HOM05D004676 ORTHO05D005661 4.9e-24 115.9 96 62.5
BcaC02g08125 Brassica carinata HOM05D004676 ORTHO05D005661 3.2e-23 113.2 96 65.6
C04p58100 Brassica napus HOM05D004676 ORTHO05D005661 4.1e-23 112.8 137 55.5
BraA07t30700Z Brassica rapa HOM05D004676 ORTHO05D005661 7.0e-23 112.1 91 67.0
Mapoly0006s0051 Marchantia polymorpha HOM05D004676 ORTHO05D005661 7.0e-23 112.1 107 58.9
ATR0693G379 Amborella trichopoda HOM05D004676 ORTHO05D005661 1.6e-22 110.9 186 48.4
BraA07t29644Z Brassica rapa HOM05D004676 ORTHO05D005661 2.0e-22 110.5 87 67.8
FvH4_3g36120 Fragaria vesca HOM05D002246 ORTHO05D002308 1.7e-21 107.5 97 58.8
FAN11G1736 Fragaria x ananassa HOM05D002246 ORTHO05D002308 1.7e-21 107.5 97 58.8
RcHm_v2.0_Chr5g0064841 Rosa chinensis HOM05D004676 ORTHO05D005661 1.7e-21 107.5 96 59.4
Os09g0103700 Oryza sativa ssp. japonica HOM05D004676 ORTHO05D005661 3.0e-21 106.7 178 40.4
SMO117G0168 Selaginella moellendorffii HOM05D004676 ORTHO05D005661 6.6e-21 105.5 93 61.3
Zm00001eb095710 Zea mays HOM05D004676 ORTHO05D005661 6.6e-21 105.5 120 52.5
Zm00001eb307410 Zea mays HOM05D004676 ORTHO05D005661 1.5e-20 104.4 121 52.1
MD11G1107700 Malus domestica HOM05D004676 ORTHO05D005661 1.9e-20 104.0 72 70.8
Os05g0297400 Oryza sativa ssp. japonica HOM05D004676 ORTHO05D005661 1.9e-20 104.0 173 40.5
ECA247G4102 Erigeron canadensis HOM05D004676 ORTHO05D005661 4.4e-17 92.8 150 44.0
Dinv42954 Davidia involucrata HOM05D004736 ORTHO05D006424 1.9e-15 87.4 45 91.1
Dinv43146 Davidia involucrata HOM05D004736 ORTHO05D006424 1.9e-15 87.4 45 91.1
ECA233G2734 Erigeron canadensis HOM05D004676 ORTHO05D005661 7.8e-14 82.0 45 86.7
CBR_g53496 Chara braunii HOM05D004676 ORTHO05D137281 3.9e-13 79.7 85 54.1
Eucgr.E01961 Eucalyptus grandis HOM05D004676 ORTHO05D005661 5.8e-09 65.9 42 78.6
RcHm_v2.0_Chr5g0064811 Rosa chinensis HOM05D004676 ORTHO05D005661 2.1e-06 57.4 190 34.2
TAR625G0807 Trochodendron aralioides HOM05D004676 ORTHO05D005661 2.1e-06 57.4 52 59.6
HPP92_003385 Vanilla planifolia HOM05D004676 ORTHO05D005661 3.5e-06 56.6 42 66.7


User provided reference genes

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