Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA232G4957 Erigeron canadensis HOM05D007920 ORTHO05D009993 2.5e-59 231.9 116 100.0
HanXRQChr09g0274501 Helianthus annuus HOM05D007920 ORTHO05D009993 5.0e-31 137.9 114 59.6
HanXRQChr05g0154421 Helianthus annuus HOM05D007920 ORTHO05D009993 3.6e-29 131.7 115 59.1
Hma1.2p1_0109F.1_g052370 Hydrangea macrophylla HOM05D007920 ORTHO05D009993 5.2e-28 127.9 116 57.8
Lsat_1_v5_gn_4_87000 Lactuca sativa HOM05D007920 ORTHO05D009993 1.1e-25 120.2 87 67.8
Nitab4.5_0001454g0110 Nicotiana tabacum HOM05D001080 ORTHO05D009993 3.1e-25 118.6 110 54.5
Sopen03g035960 Solanum pennellii HOM05D007920 ORTHO05D009993 3.1e-25 118.6 106 58.5
Nitab4.5_0012943g0020 Nicotiana tabacum HOM05D007920 ORTHO05D009993 4.1e-25 118.2 106 57.5
Actinidia36878 Actinidia chinensis HOM05D007920 ORTHO05D009993 2.0e-24 115.9 112 57.1
PGSC0003DMG400014190 Solanum tuberosum HOM05D007920 ORTHO05D009993 4.5e-24 114.8 106 56.6
Lj5C79G1 Lonicera japonica HOM05D007920 ORTHO05D009993 7.7e-24 114.0 114 50.0
Rhsim12G0188100 Rhododendron simsii HOM05D007920 ORTHO05D009993 1.3e-23 113.2 111 55.0
RcHm_v2.0_Chr2g0133221 Rosa chinensis HOM05D007920 ORTHO05D009993 2.2e-23 112.5 95 60.0
Migut.D01101 Erythranthe guttata HOM05D007920 ORTHO05D009993 3.8e-23 111.7 90 60.0
Prupe.3G096700 Prunus persica HOM05D007920 ORTHO05D009993 6.5e-23 110.9 97 58.8
Duzib192G0651 Durio zibethinus HOM05D007920 ORTHO05D009993 8.5e-23 110.5 97 57.7
Oeu060125.1 Olea europaea HOM05D007920 ORTHO05D009993 1.1e-22 110.2 108 49.1
BraA06t24364Z Brassica rapa HOM05D000537 ORTHO05D000415 1.9e-22 109.4 93 55.9
CARHR016410 Cardamine hirsuta HOM05D007920 ORTHO05D009993 1.9e-22 109.4 109 51.4
Psat5g304800 Pisum sativum HOM05D007920 ORTHO05D009993 1.9e-22 109.4 115 47.0
AT1G15900 Arabidopsis thaliana HOM05D007920 ORTHO05D009993 3.2e-22 108.6 93 55.9
FAN09G3519 Fragaria x ananassa HOM05D007920 ORTHO05D009993 4.2e-22 108.2 95 58.9
QL05p035351 Quercus lobata HOM05D007920 ORTHO05D009993 4.2e-22 108.2 93 58.1
Carub.0001s1570 Capsella rubella HOM05D007920 ORTHO05D009993 7.2e-22 107.5 93 54.8
Gorai.006G107000 Gossypium raimondii HOM05D007920 ORTHO05D009993 7.2e-22 107.5 97 55.7
Sp1g14205 Schrenkiella parvula HOM05D007920 ORTHO05D009993 7.2e-22 107.5 93 54.8
Aa31LG7G480 Aethionema arabicum HOM05D007920 ORTHO05D009993 9.4e-22 107.1 105 49.5
MELO3C017832.2 Cucumis melo HOM05D007920 ORTHO05D009993 9.4e-22 107.1 101 53.5
FAN05G5030 Fragaria x ananassa HOM05D007920 ORTHO05D009993 9.4e-22 107.1 95 57.9
FAN02G0847 Fragaria x ananassa HOM05D007920 ORTHO05D009993 1.2e-21 106.7 95 57.9
MD17G1221700 Malus domestica HOM05D007920 ORTHO05D009993 1.2e-21 106.7 94 58.5
MSTRG.9407 Avicennia marina HOM05D007920 ORTHO05D009993 1.6e-21 106.3 109 49.5
CSS0007854 Camellia sinensis var. sinensis HOM05D007920 ORTHO05D009993 1.6e-21 106.3 105 58.1
Thhalv10009838m.g Eutrema salsugineum HOM05D007920 ORTHO05D009993 1.6e-21 106.3 97 53.6
A06p11940 Brassica napus HOM05D000537 ORTHO05D000415 2.7e-21 105.5 93 52.7
C05p14120 Brassica napus HOM05D000537 ORTHO05D000415 2.7e-21 105.5 93 53.8
BolC5t30143H Brassica oleracea HOM05D000537 ORTHO05D000415 2.7e-21 105.5 93 53.8
FvH4_6g28800 Fragaria vesca HOM05D007920 ORTHO05D009993 2.7e-21 105.5 95 56.8
AL1G28072 Arabidopsis lyrata HOM05D007920 ORTHO05D009993 3.6e-21 105.1 91 53.8
CANSAT56G1317 Cannabis sativa HOM05D007920 ORTHO05D009993 3.6e-21 105.1 111 47.7
SGA_v2.0_scaffold117G32314 Striga asiatica HOM05D007920 ORTHO05D009993 3.6e-21 105.1 89 55.1
CsaV3_4G002040 Cucumis sativus L. HOM05D001994 ORTHO05D001954 8.0e-21 104.0 92 56.5
Lalb_Chr24g0395321 Lupinus albus HOM05D007920 ORTHO05D009993 8.0e-21 104.0 111 49.5
Sabra01G0032500 Salix brachista HOM05D001994 ORTHO05D001954 1.4e-20 103.2 91 57.1
THA.LOC104808181 Tarenaya hassleriana HOM05D007920 ORTHO05D009993 1.4e-20 103.2 92 56.5
Cc04_g04970 Coffea canephora HOM05D007920 ORTHO05D009993 1.8e-20 102.8 92 56.5
Gohir.D09G090800 Gossypium hirsutum HOM05D007920 ORTHO05D009993 1.8e-20 102.8 97 54.6
SalBow6G6899 Salvia bowleyana HOM05D007920 ORTHO05D009993 3.0e-20 102.1 111 46.8
Cpa.g.sc10.92 Carica papaya HOM05D007920 ORTHO05D009993 4.0e-20 101.7 99 54.5
ClCG00G003920 Citrullus lanatus HOM05D007920 ORTHO05D009993 4.0e-20 101.7 92 55.4
ClCG07G012110 Citrullus lanatus HOM05D007920 ORTHO05D009993 4.0e-20 101.7 92 55.4
Gohir.A09G090800 Gossypium hirsutum HOM05D007920 ORTHO05D009993 5.2e-20 101.3 97 53.6
Thecc.06G039600 Theobroma cacao HOM05D007920 ORTHO05D009993 6.8e-20 100.9 94 56.4
Ca_01022_v3 Cicer arietinum L. HOM05D007920 ORTHO05D009993 8.8e-20 100.5 95 49.5
Potri.001G046900 Populus trichocarpa HOM05D007920 ORTHO05D009993 1.2e-19 100.1 91 56.0
SalBow6G4591 Salvia bowleyana HOM05D007920 ORTHO05D009993 1.5e-19 99.8 91 51.6
CiPaw.01G253600 Carya illinoinensis HOM05D007920 ORTHO05D009993 2.0e-19 99.4 88 56.8
Sed0007883 Sechium edule HOM05D001994 ORTHO05D001954 2.0e-19 99.4 90 55.6
TAR383G1062 Trochodendron aralioides HOM05D007920 ORTHO05D009993 2.0e-19 99.4 103 49.5
Cfa000225 Carpinus fangiana HOM05D007920 ORTHO05D009993 2.6e-19 99.0 94 55.3
PGR031G3888 Punica granatum HOM05D007920 ORTHO05D009993 4.4e-19 98.2 96 53.1
Glyma.15G004000 Glycine max HOM05D007920 ORTHO05D009993 5.7e-19 97.8 102 52.0
Manes.11G065050 Manihot esculenta HOM05D007920 ORTHO05D009993 5.7e-19 97.8 91 56.0
SHI00232 Sapria himalayana HOM05D007920 ORTHO05D009993 7.5e-19 97.4 88 53.4
Medtr2g104930 Medicago truncatula HOM05D007920 ORTHO05D009993 9.7e-19 97.1 99 48.5
Sc12g0008420 Simmondsia chinensis HOM05D007920 ORTHO05D009993 9.7e-19 97.1 113 46.0
TWI12G0021 Tripterygium wilfordii HOM05D007920 ORTHO05D009993 9.7e-19 97.1 86 54.7
Lj3g0004979 Lotus japonicus HOM05D007920 ORTHO05D009993 1.7e-18 96.3 92 51.1
Ciclev10026801m.g Citrus clementina HOM05D007920 ORTHO05D009993 2.2e-18 95.9 90 53.3
Lalb_Chr14g0374051 Lupinus albus HOM05D007920 ORTHO05D009993 6.3e-18 94.4 111 47.7
Phvul.005G182500 Phaseolus vulgaris HOM05D007920 ORTHO05D009993 8.3e-18 94.0 97 49.5
ATR0559G078 Amborella trichopoda HOM05D007920 ORTHO05D009993 2.4e-17 92.4 107 44.9
SEGI_11378 Sequoiadendron giganteum HOM05D007920 ORTHO05D009993 7.0e-17 90.9 92 50.0
Nn8g39812 Nelumbo nucifera HOM05D007920 ORTHO05D009993 1.2e-16 90.1 93 48.4
FAN14G5942 Fragaria x ananassa HOM05D007920 ORTHO05D009993 2.0e-16 89.4 96 51.0
Aqoxy7G03460 Aquilegia oxysepala HOM05D007920 ORTHO05D009993 4.5e-16 88.2 95 48.4
arahy.Tifrunner.gnm1.ann1.D8WECR Arachis hypogaea HOM05D007920 ORTHO05D009993 7.7e-16 87.4 82 54.9
TPR.G36324 Trifolium pratense HOM05D007920 ORTHO05D009993 1.3e-15 86.7 81 53.1
VMungo1080G1626 Vigna mungo HOM05D007920 ORTHO05D009993 3.8e-15 85.1 105 45.7
Ah.01g006840 Amaranthus hybridus HOM05D007920 ORTHO05D009993 5.0e-15 84.7 115 41.7
Sc02g0006940 Simmondsia chinensis HOM05D007920 ORTHO05D009993 5.0e-15 84.7 108 43.5
unitig_736.g22804 Utricularia gibba HOM05D000537 ORTHO05D000776 6.5e-15 84.3 89 49.4
Mapoly0046s0029 Marchantia polymorpha HOM05D007920 ORTHO05D009993 1.9e-14 82.8 112 42.9
Zm00001eb278260 Zea mays HOM05D007920 ORTHO05D009993 3.2e-14 82.0 82 53.7
HPP92_000037 Vanilla planifolia HOM05D001122 ORTHO05D001877 2.7e-13 79.0 83 47.0
COL.COLO4_26676 Corchorus olitorius HOM05D007920 ORTHO05D009993 1.8e-12 76.3 70 58.6
MD16G1196200 Malus domestica HOM05D007920 ORTHO05D009993 2.0e-08 62.8 73 47.9
Lsat_1_v5_gn_2_132940 Lactuca sativa HOM05D007920 ORTHO05D009993 2.7e-08 62.4 69 46.4


User provided reference genes

Program Settings