Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA232G4920 Erigeron canadensis HOM05D004348 ORTHO05D006191 0.0e+00 2416.7 1277 100.0
HanXRQChr16g0507461 Helianthus annuus HOM05D004348 ORTHO05D006191 0.0e+00 1526.5 1141 71.3
Lsat_1_v5_gn_4_124060 Lactuca sativa HOM05D004348 ORTHO05D006191 0.0e+00 1452.2 1188 67.5
ECA247G1923 Erigeron canadensis HOM05D004348 ORTHO05D006191 0.0e+00 1339.7 1155 62.2
HanXRQChr02g0038751 Helianthus annuus HOM05D004348 ORTHO05D006191 0.0e+00 1304.3 1155 61.9
Lj4A53T53 Lonicera japonica HOM05D004348 ORTHO05D006191 0.0e+00 1288.9 1110 62.9
CSS0012651 Camellia sinensis var. sinensis HOM05D004348 ORTHO05D006191 0.0e+00 1259.2 1072 62.7
Cc10_g04460 Coffea canephora HOM05D004348 ORTHO05D006191 0.0e+00 1238.4 1095 60.5
QL02p005708 Quercus lobata HOM05D004348 ORTHO05D006191 0.0e+00 1237.2 1075 61.3
Hma1.2p1_0337F.1_g129300 Hydrangea macrophylla HOM05D004348 ORTHO05D006191 0.0e+00 1227.6 1081 60.4
Atru.chr13.637 Acer truncatum HOM05D004348 ORTHO05D006191 0.0e+00 1225.3 1105 59.9
Cfa018516 Carpinus fangiana HOM05D004348 ORTHO05D006191 0.0e+00 1225.3 1105 60.7
Prupe.1G440200 Prunus persica HOM05D004348 ORTHO05D006191 0.0e+00 1225.3 1187 57.1
Oeu057258.1 Olea europaea HOM05D004348 ORTHO05D006191 0.0e+00 1224.2 1090 60.8
DCAR_020931 Daucus carota HOM05D004348 ORTHO05D006191 0.0e+00 1223.0 1071 61.6
RcHm_v2.0_Chr6g0307221 Rosa chinensis HOM05D004348 ORTHO05D006191 0.0e+00 1221.5 1068 61.0
TAR625G1112 Trochodendron aralioides HOM05D004348 ORTHO05D006191 0.0e+00 1219.1 1103 59.9
vmacro21553 Vaccinium macrocarpon HOM05D004348 ORTHO05D006191 0.0e+00 1219.1 1077 61.4
MD15G1086600 Malus domestica HOM05D004348 ORTHO05D006191 0.0e+00 1218.0 1186 56.9
MD08G1105600 Malus domestica HOM05D004348 ORTHO05D006191 0.0e+00 1217.6 1100 59.0
Atru.chr1.1668 Acer truncatum HOM05D004348 ORTHO05D006191 0.0e+00 1214.5 1091 59.9
GSVIVG01009553001 Vitis vinifera HOM05D004348 ORTHO05D006191 0.0e+00 1213.4 1077 60.6
Oeu003300.1 Olea europaea HOM05D004348 ORTHO05D006191 0.0e+00 1211.4 1109 59.4
Rhsim06G0047100 Rhododendron simsii HOM05D004348 ORTHO05D006191 0.0e+00 1207.6 1075 61.3
PGR031G2748 Punica granatum HOM05D004348 ORTHO05D006191 0.0e+00 1203.3 1082 59.4
Potri.014G034100 Populus trichocarpa HOM05D004348 ORTHO05D006191 0.0e+00 1201.8 1097 59.5
FvH4_2g34840 Fragaria vesca HOM05D004348 ORTHO05D006191 0.0e+00 1201.4 1176 57.8
PGSC0003DMG400007988 Solanum tuberosum HOM05D004348 ORTHO05D006191 0.0e+00 1191.8 1081 58.7
Aqoxy5G01277 Aquilegia oxysepala HOM05D004348 ORTHO05D006191 0.0e+00 1190.3 1105 59.0
Solyc04g079280.4 Solanum lycopersicum HOM05D004348 ORTHO05D006191 0.0e+00 1186.8 1081 58.6
AL7G16960 Arabidopsis lyrata HOM05D004348 ORTHO05D006191 0.0e+00 1185.2 1059 58.7
Sopen04g032870 Solanum pennellii HOM05D004348 ORTHO05D006191 0.0e+00 1184.9 1097 58.0
Manes.05G171200 Manihot esculenta HOM05D004348 ORTHO05D006191 0.0e+00 1182.9 1089 58.9
Sabra14G0024200 Salix brachista HOM05D004348 ORTHO05D006191 0.0e+00 1182.5 1092 58.9
COL.COLO4_26463 Corchorus olitorius HOM05D004348 ORTHO05D006191 0.0e+00 1181.4 1093 58.7
Nitab4.5_0000068g0550 Nicotiana tabacum HOM05D004348 ORTHO05D006191 0.0e+00 1181.0 1067 59.3
CiPaw.16G046500 Carya illinoinensis HOM05D004348 ORTHO05D006191 0.0e+00 1177.9 1086 58.7
Actinidia15256 Actinidia chinensis HOM05D004348 ORTHO05D006191 0.0e+00 1177.5 1023 61.8
Phvul.001G020000 Phaseolus vulgaris HOM05D004348 ORTHO05D006191 0.0e+00 1176.4 1072 58.2
THA.LOC104806947 Tarenaya hassleriana HOM05D004348 ORTHO05D006191 0.0e+00 1174.1 1085 57.4
C01p04470 Brassica napus HOM05D004348 ORTHO05D006191 0.0e+00 1172.5 1060 58.3
BolC1t00433H Brassica oleracea HOM05D004348 ORTHO05D006191 0.0e+00 1171.8 1060 58.1
BraA01t00399Z Brassica rapa HOM05D004348 ORTHO05D006191 0.0e+00 1171.0 1059 58.0
A01p04110 Brassica napus HOM05D004348 ORTHO05D006191 0.0e+00 1170.6 1059 58.0
Sp7g32110 Schrenkiella parvula HOM05D004348 ORTHO05D006191 0.0e+00 1170.6 1094 56.9
arahy.Tifrunner.gnm1.ann1.2EEB7P Arachis hypogaea HOM05D004348 ORTHO05D006191 0.0e+00 1166.8 1070 58.7
arahy.Tifrunner.gnm1.ann1.3D95JG Arachis hypogaea HOM05D004348 ORTHO05D006191 0.0e+00 1166.8 1070 58.7
Eucgr.F02367 Eucalyptus grandis HOM05D004348 ORTHO05D006191 0.0e+00 1164.8 1047 59.7
Sc02g0006980 Simmondsia chinensis HOM05D004348 ORTHO05D006191 0.0e+00 1164.8 1100 57.5
MELO3C016737.2 Cucumis melo HOM05D004348 ORTHO05D006191 0.0e+00 1160.6 1077 57.9
Nn5g30212 Nelumbo nucifera HOM05D004348 ORTHO05D006191 0.0e+00 1160.2 1068 59.3
Medtr1g019960 Medicago truncatula HOM05D004348 ORTHO05D006191 0.0e+00 1159.4 1109 58.1
CANSAT78G0057 Cannabis sativa HOM05D004348 ORTHO05D006191 0.0e+00 1157.9 1073 58.8
Psat6g012000 Pisum sativum HOM05D004348 ORTHO05D006191 0.0e+00 1156.0 1183 54.5
Sed0012719 Sechium edule HOM05D004348 ORTHO05D006191 0.0e+00 1155.6 1154 55.9
Lalb_Chr24g0399211 Lupinus albus HOM05D004348 ORTHO05D006191 0.0e+00 1153.7 1087 57.8
Gorai.002G131100 Gossypium raimondii HOM05D004348 ORTHO05D006191 0.0e+00 1153.3 1099 57.8
Gohir.D01G106800 Gossypium hirsutum HOM05D004348 ORTHO05D006191 0.0e+00 1152.1 1095 57.8
Thecc.08G012500 Theobroma cacao HOM05D004348 ORTHO05D006191 0.0e+00 1151.0 1088 58.5
Cpa.g.c24415.13 Carica papaya HOM05D004348 ORTHO05D006191 0.0e+00 1149.4 1097 57.5
FAN27G3414 Fragaria x ananassa HOM05D004348 ORTHO05D006191 0.0e+00 1149.4 1202 55.9
FAN15G1136 Fragaria x ananassa HOM05D004348 ORTHO05D006191 0.0e+00 1147.5 1164 56.6
Lj5g0025546 Lotus japonicus HOM05D004348 ORTHO05D006191 0.0e+00 1145.2 1184 53.9
Duzib093G0393 Durio zibethinus HOM05D004348 ORTHO05D006191 0.0e+00 1142.9 1086 58.1
Thhalv10024246m.g Eutrema salsugineum HOM05D004348 ORTHO05D006191 0.0e+00 1141.7 1057 57.5
AUR62039313 Chenopodium quinoa HOM05D004348 ORTHO05D006191 0.0e+00 1140.9 1048 58.9
ClCG05G019730 Citrullus lanatus HOM05D004348 ORTHO05D006191 0.0e+00 1135.6 1056 58.8
Peaxi162Scf00528g00825 Petunia axillaris HOM05D004348 ORTHO05D006191 0.0e+00 1135.6 1091 57.2
VMungo0647G0261 Vigna mungo HOM05D004348 ORTHO05D006191 0.0e+00 1131.3 1073 56.9
AUR62022445 Chenopodium quinoa HOM05D004348 ORTHO05D006191 0.0e+00 1129.0 1045 58.3
PSO675G6987 Papaver somniferum HOM05D004348 ORTHO05D006191 0.0e+00 1128.2 1093 56.6
EL10Ac1g01783 Beta vulgaris HOM05D004348 ORTHO05D006191 0.0e+00 1121.7 1051 58.3
Dinv35980 Davidia involucrata HOM05D004348 ORTHO05D006191 0.0e+00 1120.1 921 64.4
Hund26625 Selenicereus undatus HOM05D004348 ORTHO05D006191 0.0e+00 1119.0 1089 56.7
SGA_v2.0_scaffold226G43137 Striga asiatica HOM05D004348 ORTHO05D006191 0.0e+00 1116.7 1094 57.0
Migut.N02696 Erythranthe guttata HOM05D004348 ORTHO05D006191 0.0e+00 1098.6 1068 55.6
CAN.G371.44 Capsicum annuum HOM05D004348 ORTHO05D006191 0.0e+00 1095.5 925 61.4
Ciclev10000175m.g Citrus clementina HOM05D004348 ORTHO05D006191 8.7e-312 1074.7 929 60.6
CDE10G0798 Ceratophyllum demersum HOM05D004348 ORTHO05D006191 8.7e-312 1073.5 1104 53.4
CsaV3_4G034150 Cucumis sativus L. HOM05D004348 ORTHO05D006191 1.7e-311 1073.2 927 59.5
AT4G34310 Arabidopsis thaliana HOM05D004348 ORTHO05D006191 3.5e-311 1072.0 922 59.7
CARHR242470 Cardamine hirsuta HOM05D004348 ORTHO05D006191 7.9e-311 1070.8 940 58.8
ATR1159G040 Amborella trichopoda HOM05D004348 ORTHO05D006191 4.7e-308 1061.6 1079 54.5
Carub.0007s0605 Capsella rubella HOM05D004348 ORTHO05D006191 4.7e-308 1061.6 922 59.4
Sed0015301 Sechium edule HOM05D004348 ORTHO05D006191 8.9e-307 1057.4 921 60.4
Gohir.A01G118500 Gossypium hirsutum HOM05D004348 ORTHO05D006191 6.2e-300 1034.6 922 60.1
Glyma.17G244300 Glycine max HOM05D004348 ORTHO05D006191 2.0e-298 1029.6 1000 56.1
Ca_13305_v3 Cicer arietinum L. HOM05D004348 ORTHO05D006191 3.4e-298 1028.9 1183 51.0
TPR.G13698 Trifolium pratense HOM05D004348 ORTHO05D006191 9.9e-298 1027.3 984 57.5
CDE10G0919 Ceratophyllum demersum HOM05D004348 ORTHO05D006191 1.2e-290 1003.8 1090 51.5
Dinv39334 Davidia involucrata HOM05D004348 ORTHO05D006191 1.2e-287 993.8 1031 55.5
Aa31LG2G16180 Aethionema arabicum HOM05D004348 ORTHO05D006191 7.9e-287 991.1 856 60.0
Glyma.14G081100 Glycine max HOM05D004348 ORTHO05D006191 9.9e-282 974.2 924 56.4
Nitab4.5_0005301g0040 Nicotiana tabacum HOM05D004348 ORTHO05D006191 2.3e-270 936.4 908 57.0
Zm00001eb006390 Zea mays HOM05D004348 ORTHO05D006191 2.3e-270 936.4 1073 50.4
HPP92_019297 Vanilla planifolia HOM05D004348 ORTHO05D006191 4.7e-247 859.0 1075 47.7
MBI06_g27707_MAGBIO Magnolia biondii HOM05D004348 ORTHO05D006191 3.0e-246 856.3 909 53.9
SHI08301 Sapria himalayana HOM05D004348 ORTHO05D006191 2.2e-233 813.5 916 51.9
Mapoly0033s0109 Marchantia polymorpha HOM05D004348 ORTHO05D006191 5.9e-218 762.3 1090 42.6
SMO144G0009 Selaginella moellendorffii HOM05D004348 ORTHO05D006191 2.6e-213 746.9 1034 42.3
AagrBONN_evm.TU.Sc2ySwM_344.1636 Anthoceros agrestis HOM05D004348 ORTHO05D006191 7.8e-210 735.3 1065 43.3
unitig_26.g10059 Utricularia gibba HOM05D004348 ORTHO05D006191 4.9e-196 689.5 914 45.8
Pp3c17_5660 Physcomitrium patens HOM05D004348 ORTHO05D006191 1.2e-194 684.9 1070 39.9
Lsat_1_v5_gn_8_33681 Lactuca sativa HOM05D004348 ORTHO05D006191 2.4e-171 607.4 637 56.5
Os03g0185500 Oryza sativa ssp. japonica HOM05D004348 ORTHO05D006191 2.4e-166 590.9 496 59.9
Haze_17559 Corylus avellana HOM05D004348 ORTHO05D006191 1.2e-157 562.0 1174 36.5
SEGI_07910 Sequoiadendron giganteum HOM05D004348 ORTHO05D006191 7.6e-157 559.3 564 51.8
SEGI_03031 Sequoiadendron giganteum HOM05D004348 ORTHO05D006191 5.1e-145 520.0 632 44.9
Potri.002G128201 Populus trichocarpa HOM05D004348 ORTHO05D006191 5.1e-137 493.4 463 56.8
Lsat_1_v5_gn_1_21400 Lactuca sativa HOM05D004348 ORTHO05D006191 5.3e-118 430.3 323 70.0
Lsat_1_v5_gn_1_42721 Lactuca sativa HOM05D004348 ORTHO05D006191 5.3e-118 430.3 323 70.0
Lsat_1_v5_gn_9_17721 Lactuca sativa HOM05D004348 ORTHO05D006191 5.3e-118 430.3 323 70.0
CBR_g45541 Chara braunii HOM05D004348 ORTHO05D006191 1.4e-105 389.0 1335 27.6
Lsat_1_v5_gn_3_76560 Lactuca sativa HOM05D004348 ORTHO05D006191 1.8e-89 335.5 233 74.2
Lsat_1_v5_gn_4_501 Lactuca sativa HOM05D004348 ORTHO05D006191 1.8e-89 335.5 233 74.2
Lsat_1_v5_gn_2_12981 Lactuca sativa HOM05D004348 ORTHO05D006191 5.4e-86 323.9 306 60.1
MSTRG.22273 Avicennia marina HOM05D004348 ORTHO05D006191 2.3e-81 308.5 311 54.3
unitig_26.g10060 Utricularia gibba HOM05D004348 ORTHO05D006191 6.8e-81 307.0 180 79.4
MSTRG.22274 Avicennia marina HOM05D004348 ORTHO05D006191 9.9e-80 303.1 169 80.5
CiPaw.16G046800 Carya illinoinensis HOM05D004348 ORTHO05D006191 4.3e-67 261.2 155 78.1
SHI08298 Sapria himalayana HOM05D004348 ORTHO05D006191 6.9e-65 253.8 151 77.5
MD08G1105800 Malus domestica HOM05D004348 ORTHO05D006191 1.0e-60 240.0 133 80.5
HPP92_028299 Vanilla planifolia HOM05D004348 ORTHO05D006191 1.5e-56 226.1 132 75.8
Lsat_1_v5_gn_9_98160 Lactuca sativa HOM05D004348 ORTHO05D005602 1.8e-52 212.6 175 66.9
Lsat_1_v5_gn_1_20621 Lactuca sativa HOM05D004348 ORTHO05D006191 1.1e-49 203.4 105 86.7
Haze_18739 Corylus avellana HOM05D004348 ORTHO05D006191 7.9e-45 187.2 175 55.4
Cre16.g686501 Chlamydomonas reinhardtii HOM05D004348 ORTHO05D006191 6.5e-39 167.5 253 37.9
PRCOL_00001182 Prasinoderma coloniale HOM05D004348 ORTHO05D006191 4.2e-38 164.9 409 29.6
SEGI_30856 Sequoiadendron giganteum HOM05D004348 ORTHO05D006191 4.6e-37 161.4 209 47.8
HPP92_019296 Vanilla planifolia HOM05D004348 ORTHO05D006191 2.4e-33 149.1 86 77.9
Lsat_1_v5_gn_9_67901 Lactuca sativa HOM05D004348 ORTHO05D006191 5.0e-31 141.4 98 75.5
TPR.G40548 Trifolium pratense HOM05D004348 ORTHO05D006191 6.1e-29 134.4 77 80.5
Lsat_1_v5_gn_5_11760 Lactuca sativa HOM05D004348 ORTHO05D006191 9.1e-25 120.6 76 77.6
Aa31LG2G16170 Aethionema arabicum HOM05D004348 ORTHO05D006191 1.4e-20 106.7 241 35.7
SEGI_03645 Sequoiadendron giganteum HOM05D004348 ORTHO05D006191 2.6e-19 102.4 157 43.9
Mapoly0064s0093 Marchantia polymorpha HOM05D004348 ORTHO05D000239 2.8e-18 99.0 241 29.5
Mapoly0031s0035 Marchantia polymorpha HOM05D004348 ORTHO05D000239 1.4e-17 96.7 249 27.7
Mapoly2546s0001 Marchantia polymorpha HOM05D004348 ORTHO05D000239 4.1e-17 95.1 223 30.0
Mapoly0017s0011 Marchantia polymorpha HOM05D004348 ORTHO05D006191 9.1e-17 94.0 190 39.5
Mapoly0637s0001 Marchantia polymorpha HOM05D004348 ORTHO05D000239 2.6e-16 92.4 255 27.8
Mapoly1060s0002 Marchantia polymorpha HOM05D004348 ORTHO05D000239 2.6e-16 92.4 253 29.2
Mapoly0893s0001 Marchantia polymorpha HOM05D004348 ORTHO05D000239 4.5e-16 91.7 253 29.2
Atru.chr1.1667 Acer truncatum HOM05D004348 ORTHO05D006191 5.9e-16 91.3 101 53.5
Mapoly0200s0002 Marchantia polymorpha HOM05D004348 ORTHO05D000239 5.9e-16 91.3 223 29.6
Mapoly0107s0021 Marchantia polymorpha HOM05D004348 ORTHO05D000239 2.9e-15 89.0 252 28.2
Mapoly0200s0001 Marchantia polymorpha HOM05D004348 ORTHO05D000239 2.9e-15 89.0 233 27.9
Mapoly0064s0096 Marchantia polymorpha HOM05D004348 ORTHO05D000239 3.8e-15 88.6 149 34.2
Mapoly0067s0036 Marchantia polymorpha HOM05D011080 ORTHO05D000239 1.5e-14 86.7 228 27.2
Mapoly0062s0120 Marchantia polymorpha HOM05D004348 ORTHO05D000239 1.9e-14 86.3 252 28.6
SGA_v2.0_scaffold6G03459 Striga asiatica HOM05D004348 ORTHO05D006191 2.5e-14 85.9 47 78.7
Mapoly0049s0015 Marchantia polymorpha HOM05D004348 ORTHO05D000239 3.2e-14 85.5 253 28.1
Mapoly0016s0164 Marchantia polymorpha HOM05D004348 ORTHO05D000239 4.2e-14 85.1 152 33.6
Mapoly0147s0041 Marchantia polymorpha HOM05D000242 ORTHO05D000700 8.0e-13 80.9 296 27.0
Mapoly0007s0015 Marchantia polymorpha HOM05D000005 ORTHO05D000239 3.0e-12 79.0 155 34.8
Sp7g06010 Schrenkiella parvula HOM05D004348 ORTHO05D006191 1.5e-11 76.6 68 55.9
Mapoly0067s0038 Marchantia polymorpha HOM05D000005 ORTHO05D000239 3.3e-11 75.5 154 34.4
Mapoly0041s0095 Marchantia polymorpha HOM05D011080 ORTHO05D000239 7.4e-11 74.3 180 26.1
Cfa023648 Carpinus fangiana HOM05D012225 ORTHO05D125365 3.7e-10 72.0 214 25.7
Lsat_1_v5_gn_9_17240 Lactuca sativa HOM05D004348 ORTHO05D006191 6.3e-10 71.2 64 57.8
Mapoly0053s0005 Marchantia polymorpha HOM05D011080 ORTHO05D000239 8.2e-10 70.9 181 30.9
Mapoly0080s0029 Marchantia polymorpha HOM05D011080 ORTHO05D000239 1.1e-09 70.5 281 24.9
Mapoly0147s0044 Marchantia polymorpha HOM05D000242 ORTHO05D000700 1.8e-09 69.7 221 27.6
Pp3c9_17530 Physcomitrium patens HOM05D031884 ORTHO05D311885 2.4e-09 69.3 228 25.4
Cfa026732 Carpinus fangiana HOM05D012225 ORTHO05D124966 4.1e-09 68.6 255 26.7
Mapoly0010s0128 Marchantia polymorpha HOM05D000005 ORTHO05D000239 7.0e-09 67.8 166 28.9
Mapoly0120s0019 Marchantia polymorpha HOM05D004348 ORTHO05D000239 7.0e-09 67.8 238 25.6
Pp3c24_4860 Physcomitrium patens HOM05D004348 ORTHO05D000239 2.0e-08 66.2 106 35.8
Mapoly0108s0045 Marchantia polymorpha HOM05D020945 ORTHO05D000713 4.5e-08 65.1 179 29.6
SGA_v2.0_scaffold162G37946 Striga asiatica HOM05D004348 ORTHO05D006191 1.0e-07 63.9 39 66.7
GSVIVG01009550001 Vitis vinifera HOM05D004348 ORTHO05D006191 1.0e-07 63.9 55 60.0
Cfa022816 Carpinus fangiana HOM05D012225 ORTHO05D124422 3.8e-07 62.0 168 29.8
Mapoly0147s0004 Marchantia polymorpha HOM05D000242 ORTHO05D000700 3.8e-07 62.0 164 29.9
Mapoly0346s0002 Marchantia polymorpha HOM05D020945 ORTHO05D254421 5.0e-07 61.6 148 29.1
Mapoly0397s0001 Marchantia polymorpha HOM05D020945 ORTHO05D253181 5.0e-07 61.6 151 28.5
Cfa025012 Carpinus fangiana HOM05D012225 ORTHO05D124848 6.5e-07 61.2 147 25.9
Mapoly2448s0001 Marchantia polymorpha HOM05D020945 ORTHO05D251686 1.9e-06 59.7 164 29.3
Mapoly0052s0114 Marchantia polymorpha HOM05D029023 ORTHO05D030122 2.5e-06 59.3 256 24.6
Mapoly0108s0037 Marchantia polymorpha HOM05D029023 ORTHO05D030122 5.5e-06 58.2 256 24.6
Mapoly0555s0001 Marchantia polymorpha HOM05D029023 ORTHO05D030122 5.5e-06 58.2 256 24.6


User provided reference genes

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