Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA232G4552 Erigeron canadensis HOM05D000406 ORTHO05D186553 5.4e-50 200.7 100 100.0
HanXRQChr06g0172001 Helianthus annuus HOM05D000083 ORTHO05D003582 4.3e-07 58.2 35 68.6
Lsat_1_v5_gn_3_33541 Lactuca sativa HOM05D000083 ORTHO05D003582 4.3e-07 58.2 35 68.6
Nitab4.5_0000008g0570 Nicotiana tabacum HOM05D000406 ORTHO05D002714 5.7e-07 57.8 44 63.6
CAN.G284.11 Capsicum annuum HOM05D000406 ORTHO05D002714 7.4e-07 57.4 44 65.9
Sc01g0006750 Simmondsia chinensis HOM05D000406 ORTHO05D002714 7.4e-07 57.4 44 63.6
Solyc09g011920.3 Solanum lycopersicum HOM05D000406 ORTHO05D002714 7.4e-07 57.4 44 65.9
Sopen09g006730 Solanum pennellii HOM05D000406 ORTHO05D002714 7.4e-07 57.4 44 65.9
ECA248G2858 Erigeron canadensis HOM05D000406 ORTHO05D002714 9.6e-07 57.0 44 65.9
HanXRQChr01g0007021 Helianthus annuus HOM05D000406 ORTHO05D002714 9.6e-07 57.0 44 65.9
PGSC0003DMG400020356 Solanum tuberosum HOM05D000406 ORTHO05D002714 9.6e-07 57.0 44 63.6
ECA246G2960 Erigeron canadensis HOM05D000083 ORTHO05D003582 1.3e-06 56.6 35 65.7
Sabra16G0106600 Salix brachista HOM05D000406 ORTHO05D002714 1.3e-06 56.6 44 65.9
Cpa.g.sc56.102 Carica papaya HOM05D000406 ORTHO05D002714 1.6e-06 56.2 44 65.9
Nitab4.5_0008198g0010 Nicotiana tabacum HOM05D000406 ORTHO05D002714 1.6e-06 56.2 44 61.4
Potri.016G110100 Populus trichocarpa HOM05D000406 ORTHO05D002714 1.6e-06 56.2 44 63.6
EL10Ac5g11562 Beta vulgaris HOM05D000406 ORTHO05D002714 2.1e-06 55.8 44 61.4
Haze_24236 Corylus avellana HOM05D000406 ORTHO05D002714 2.1e-06 55.8 44 63.6
Lalb_Chr03g0042931 Lupinus albus HOM05D000406 ORTHO05D002714 2.1e-06 55.8 44 63.6
QL07p036228 Quercus lobata HOM05D000406 ORTHO05D002714 2.1e-06 55.8 46 67.4
CANSAT35G1915 Cannabis sativa HOM05D000406 ORTHO05D002714 2.8e-06 55.5 46 67.4
Manes.09G101300 Manihot esculenta HOM05D000406 ORTHO05D002714 2.8e-06 55.5 46 67.4
Nn2g13584 Nelumbo nucifera HOM05D000406 ORTHO05D002714 2.8e-06 55.5 44 63.6
Prupe.6G063200 Prunus persica HOM05D000406 ORTHO05D002714 2.8e-06 55.5 44 63.6
Hund18868 Selenicereus undatus HOM05D000406 ORTHO05D002714 2.8e-06 55.5 47 59.6
unitig_0.g1462 Utricularia gibba HOM05D000406 ORTHO05D002714 2.8e-06 55.5 44 63.6
ClCG04G007310 Citrullus lanatus HOM05D000406 ORTHO05D002714 3.7e-06 55.1 44 63.6
Dinv14477 Davidia involucrata HOM05D000406 ORTHO05D002714 3.7e-06 55.1 44 63.6
Potri.006G095500 Populus trichocarpa HOM05D000406 ORTHO05D002714 3.7e-06 55.1 44 63.6
Sabra06G0073300 Salix brachista HOM05D000406 ORTHO05D002714 3.7e-06 55.1 44 63.6
Sed0000533 Sechium edule HOM05D000406 ORTHO05D002714 3.7e-06 55.1 44 63.6
SGA_v2.0_scaffold240G44117 Striga asiatica HOM05D000591 ORTHO05D000579 3.7e-06 55.1 44 63.6
Actinidia13790 Actinidia chinensis HOM05D000406 ORTHO05D002714 4.8e-06 54.7 44 61.4
arahy.Tifrunner.gnm1.ann1.9C6MVE Arachis hypogaea HOM05D000406 ORTHO05D002714 4.8e-06 54.7 44 61.4
arahy.Tifrunner.gnm1.ann1.VNL4SU Arachis hypogaea HOM05D000406 ORTHO05D002714 4.8e-06 54.7 44 61.4
CSS0047113 Camellia sinensis var. sinensis HOM05D000406 ORTHO05D002714 4.8e-06 54.7 44 61.4
CANSAT35G0214 Cannabis sativa HOM05D000406 ORTHO05D002714 4.8e-06 54.7 46 65.2
Cfa017264 Carpinus fangiana HOM05D000406 ORTHO05D002714 4.8e-06 54.7 44 61.4
CiPaw.14G062500 Carya illinoinensis HOM05D000406 ORTHO05D002714 4.8e-06 54.7 46 69.6
Ca_09167_v3 Cicer arietinum L. HOM05D000406 ORTHO05D002714 4.8e-06 54.7 44 59.1
Haze_20937 Corylus avellana HOM05D000406 ORTHO05D002714 4.8e-06 54.7 44 61.4
HanXRQChr17g0540841 Helianthus annuus HOM05D000083 ORTHO05D003582 4.8e-06 54.7 35 65.7
Lsat_1_v5_gn_5_155321 Lactuca sativa HOM05D000406 ORTHO05D002714 4.8e-06 54.7 44 65.9
MD03G1078200 Malus domestica HOM05D000406 ORTHO05D002714 4.8e-06 54.7 46 65.2
Peaxi162Scf00141g00122 Petunia axillaris HOM05D000406 ORTHO05D002714 4.8e-06 54.7 44 61.4
PGR102G0636 Punica granatum HOM05D000406 ORTHO05D002714 4.8e-06 54.7 44 65.9
Sed0014556 Sechium edule HOM05D000406 ORTHO05D002714 4.8e-06 54.7 44 61.4
SGA_v2.0_scaffold106G30528 Striga asiatica HOM05D000591 ORTHO05D002714 4.8e-06 54.7 44 61.4
SGA_v2.0_scaffold453G51860 Striga asiatica HOM05D000406 ORTHO05D002714 4.8e-06 54.7 44 61.4
TWI77G0892 Tripterygium wilfordii HOM05D000406 ORTHO05D002714 4.8e-06 54.7 44 61.4
vmacro20229 Vaccinium macrocarpon HOM05D000406 ORTHO05D002714 4.8e-06 54.7 44 61.4
ATR0618G194 Amborella trichopoda HOM05D000406 ORTHO05D002714 6.2e-06 54.3 44 63.6
Aqoxy2G02378 Aquilegia oxysepala HOM05D000406 ORTHO05D002714 6.2e-06 54.3 44 63.6
Dinv35518 Davidia involucrata HOM05D000406 ORTHO05D002714 6.2e-06 54.3 46 67.4
Eucgr.K03000 Eucalyptus grandis HOM05D000406 ORTHO05D002714 6.2e-06 54.3 44 63.6
FvH4_3g37720 Fragaria vesca HOM05D000406 ORTHO05D002714 6.2e-06 54.3 44 63.6
FAN11G1282 Fragaria x ananassa HOM05D000406 ORTHO05D002714 6.2e-06 54.3 44 63.6
FAN16G1720 Fragaria x ananassa HOM05D000406 ORTHO05D002714 6.2e-06 54.3 44 63.6
FAN25G2210 Fragaria x ananassa HOM05D000406 ORTHO05D002714 6.2e-06 54.3 44 63.6
Lj1g0023262 Lotus japonicus HOM05D000406 ORTHO05D002714 6.2e-06 54.3 44 61.4
PSO063G5075 Papaver somniferum HOM05D000406 ORTHO05D002714 6.2e-06 54.3 44 61.4
RhsimUnG0107500 Rhododendron simsii HOM05D000406 ORTHO05D002714 6.2e-06 54.3 44 61.4
SGA_v2.0_scaffold104G30147 Striga asiatica HOM05D000406 ORTHO05D002714 6.2e-06 54.3 44 63.6
THA.LOC104799409 Tarenaya hassleriana HOM05D000406 ORTHO05D002714 6.2e-06 54.3 46 65.2
TAR636G1530 Trochodendron aralioides HOM05D000406 ORTHO05D002714 6.2e-06 54.3 46 67.4
arahy.Tifrunner.gnm1.ann1.BSZ7N6 Arachis hypogaea HOM05D000406 ORTHO05D002714 8.2e-06 53.9 44 59.1
arahy.Tifrunner.gnm1.ann1.T6IIJA Arachis hypogaea HOM05D000406 ORTHO05D002714 8.2e-06 53.9 49 59.2
BcaB01g00218 Brassica carinata HOM05D000406 ORTHO05D002714 8.2e-06 53.9 44 59.1
A09p47100 Brassica napus HOM05D000406 ORTHO05D002714 8.2e-06 53.9 44 59.1
C08p29360 Brassica napus HOM05D000406 ORTHO05D002714 8.2e-06 53.9 44 59.1
BolC8t50537H Brassica oleracea HOM05D000406 ORTHO05D002714 8.2e-06 53.9 44 59.1
BraA09t40172Z Brassica rapa HOM05D000406 ORTHO05D002714 8.2e-06 53.9 44 59.1
Cfa011631 Carpinus fangiana HOM05D000406 ORTHO05D002714 8.2e-06 53.9 44 61.4
Ciclev10012294m.g Citrus clementina HOM05D000406 ORTHO05D002714 8.2e-06 53.9 42 61.9
Thhalv10014206m.g Eutrema salsugineum HOM05D000406 ORTHO05D002714 8.2e-06 53.9 44 61.4
Glyma.01G110400 Glycine max HOM05D000406 ORTHO05D002714 8.2e-06 53.9 44 61.4
Glyma.03G076100 Glycine max HOM05D000406 ORTHO05D002714 8.2e-06 53.9 44 61.4
Glyma.18G195400 Glycine max HOM05D000406 ORTHO05D002714 8.2e-06 53.9 44 61.4
Lsat_1_v5_gn_9_31481 Lactuca sativa HOM05D000406 ORTHO05D002714 8.2e-06 53.9 42 66.7
Lj2A82T21 Lonicera japonica HOM05D000406 ORTHO05D002714 8.2e-06 53.9 44 61.4
Manes.08G086800 Manihot esculenta HOM05D000406 ORTHO05D002714 8.2e-06 53.9 44 61.4
Oeu040803.2 Olea europaea HOM05D000406 ORTHO05D002714 8.2e-06 53.9 44 61.4
Phvul.010G007800 Phaseolus vulgaris HOM05D000406 ORTHO05D002714 8.2e-06 53.9 44 61.4
PGR004G1674 Punica granatum HOM05D000406 ORTHO05D002714 8.2e-06 53.9 44 61.4
RcHm_v2.0_Chr5g0067991 Rosa chinensis HOM05D000406 ORTHO05D002714 8.2e-06 53.9 46 69.6
Sed0013400 Sechium edule HOM05D000406 ORTHO05D002714 8.2e-06 53.9 45 62.2
TWI75G1820 Tripterygium wilfordii HOM05D000406 ORTHO05D002714 8.2e-06 53.9 44 61.4
VMungo0331G1696 Vigna mungo HOM05D000406 ORTHO05D002714 8.2e-06 53.9 44 61.4


User provided reference genes

Program Settings