Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA232G4503 Erigeron canadensis HOM05D004430 ORTHO05D005088 0.0e+00 2607.8 1382 100.0
HanXRQChr17g0548691 Helianthus annuus HOM05D004430 ORTHO05D005088 0.0e+00 1167.9 1426 54.1
Lsat_1_v5_gn_4_75700 Lactuca sativa HOM05D004430 ORTHO05D005088 1.5e-296 1023.5 1446 49.9
Lj9C446G12 Lonicera japonica HOM05D004430 ORTHO05D005088 3.6e-245 852.8 1573 43.0
Dinv20629 Davidia involucrata HOM05D004430 ORTHO05D005088 1.4e-236 824.3 1627 39.6
Dinv38562 Davidia involucrata HOM05D004430 ORTHO05D005088 2.4e-228 797.0 1681 39.0
CSS0010843 Camellia sinensis var. sinensis HOM05D004430 ORTHO05D005088 4.3e-222 776.2 1590 39.9
HanXRQChr11g0348291 Helianthus annuus HOM05D004430 ORTHO05D005088 1.1e-220 771.5 707 62.0
GSVIVG01007703001 Vitis vinifera HOM05D004430 ORTHO05D005088 3.0e-215 753.4 1531 38.9
Atru.chr9.2519 Acer truncatum HOM05D004430 ORTHO05D005088 1.5e-211 741.1 1682 36.7
Solyc03g112660.3 Solanum lycopersicum HOM05D004430 ORTHO05D005088 9.9e-211 738.4 1565 39.2
COL.COLO4_30100 Corchorus olitorius HOM05D004430 ORTHO05D005088 2.7e-208 730.3 1618 38.4
Nitab4.5_0003229g0080 Nicotiana tabacum HOM05D004430 ORTHO05D005088 2.3e-207 727.2 1606 38.3
Thecc.03G018800 Theobroma cacao HOM05D004430 ORTHO05D005088 3.9e-207 726.5 1605 38.3
Potri.015G079800 Populus trichocarpa HOM05D004430 ORTHO05D005088 7.6e-203 712.2 1562 38.0
Gohir.D02G117900 Gossypium hirsutum HOM05D004430 ORTHO05D005088 1.3e-202 711.4 1612 37.7
Gorai.005G135600 Gossypium raimondii HOM05D004430 ORTHO05D005088 3.8e-202 709.9 1612 37.7
Gohir.A03G089900 Gossypium hirsutum HOM05D004430 ORTHO05D005088 1.1e-201 708.4 1614 36.4
Sopen03g031740 Solanum pennellii HOM05D004430 ORTHO05D005088 1.1e-201 708.4 1606 37.4
MD06G1170800 Malus domestica HOM05D004430 ORTHO05D005088 7.1e-201 705.7 1623 37.8
Sabra15G0104100 Salix brachista HOM05D004430 ORTHO05D005088 1.6e-200 704.5 1516 37.9
Nitab4.5_0001207g0060 Nicotiana tabacum HOM05D004430 ORTHO05D005088 1.8e-199 701.0 1640 37.0
RcHm_v2.0_Chr7g0193171 Rosa chinensis HOM05D004430 ORTHO05D005088 5.7e-198 696.0 1594 37.4
Lj4g0003819 Lotus japonicus HOM05D004430 ORTHO05D005088 6.3e-197 692.6 1623 36.5
Potri.012G088500 Populus trichocarpa HOM05D004430 ORTHO05D005088 1.1e-193 681.8 1559 36.9
Peaxi162Scf00089g00174 Petunia axillaris HOM05D004430 ORTHO05D005088 1.9e-193 681.0 1613 36.5
vmacro19413 Vaccinium macrocarpon HOM05D004430 ORTHO05D005088 2.3e-191 674.1 1595 36.9
Duzib068G0887 Durio zibethinus HOM05D004430 ORTHO05D005088 5.1e-191 672.9 1571 37.2
Sabra12G0063700 Salix brachista HOM05D004430 ORTHO05D005088 3.7e-189 666.8 1621 35.8
Rhsim08G0174600 Rhododendron simsii HOM05D004430 ORTHO05D005088 8.2e-189 665.6 1583 37.9
Duzib205G1695 Durio zibethinus HOM05D004430 ORTHO05D005088 1.4e-188 664.8 1623 35.6
Prupe.5G170400 Prunus persica HOM05D004430 ORTHO05D005088 9.0e-188 662.1 1700 35.2
Glyma.17G087600 Glycine max HOM05D004430 ORTHO05D005088 1.9e-185 654.4 1612 36.2
MD14G1176500 Malus domestica HOM05D004430 ORTHO05D005088 7.2e-185 652.5 1628 36.2
QL10p008934 Quercus lobata HOM05D004430 ORTHO05D005088 2.7e-184 650.6 1613 36.7
Duzib084G1065 Durio zibethinus HOM05D004430 ORTHO05D005088 4.6e-184 649.8 1624 35.5
FvH4_5g05640 Fragaria vesca HOM05D004430 ORTHO05D005088 1.0e-183 648.7 1592 37.2
TWI14G0761 Tripterygium wilfordii HOM05D004430 ORTHO05D005088 1.4e-183 648.3 1574 36.3
FAN04G2171 Fragaria x ananassa HOM05D004430 ORTHO05D005088 1.8e-183 647.9 1576 36.8
TWI39G0976 Tripterygium wilfordii HOM05D004430 ORTHO05D005088 1.5e-182 644.8 1596 36.0
Lalb_Chr07g0182821 Lupinus albus HOM05D004430 ORTHO05D005088 1.3e-181 641.7 1634 36.2
FAN13G0016 Fragaria x ananassa HOM05D004430 ORTHO05D005088 1.7e-181 641.3 1595 37.1
Lalb_Chr12g0201701 Lupinus albus HOM05D004430 ORTHO05D005088 2.8e-181 640.6 1638 36.3
CAN.G1166.22 Capsicum annuum HOM05D004430 ORTHO05D005088 8.5e-178 629.0 1620 35.6
Manes.06G107200 Manihot esculenta HOM05D004430 ORTHO05D005088 2.5e-177 627.5 1665 35.6
AUR62028764 Chenopodium quinoa HOM05D004430 ORTHO05D005088 7.2e-177 625.9 1618 35.2
Migut.D01964 Erythranthe guttata HOM05D004430 ORTHO05D005088 2.1e-176 624.4 1608 35.5
arahy.Tifrunner.gnm1.ann1.FBBL0Z Arachis hypogaea HOM05D004430 ORTHO05D005088 3.9e-175 620.2 1651 34.3
TPR.G28716 Trifolium pratense HOM05D004430 ORTHO05D005088 7.4e-174 615.9 1584 35.9
FAN18G2048 Fragaria x ananassa HOM05D004430 ORTHO05D005088 1.3e-173 615.1 1590 36.7
Manes.06G107300 Manihot esculenta HOM05D004430 ORTHO05D005088 1.4e-172 611.7 1651 34.9
FAN08G1542 Fragaria x ananassa HOM05D004430 ORTHO05D005088 2.4e-172 610.9 1599 36.0
Lalb_Chr13g0297721 Lupinus albus HOM05D004430 ORTHO05D005088 2.4e-172 610.9 1586 35.5
Oeu036008.4 Olea europaea HOM05D004430 ORTHO05D005088 1.6e-171 608.2 1520 36.1
Oeu024704.1 Olea europaea HOM05D004430 ORTHO05D005088 1.3e-170 605.1 1628 35.0
CsaV3_1G001360 Cucumis sativus L. HOM05D004430 ORTHO05D005088 2.9e-170 604.0 1564 35.2
TAR374G1038 Trochodendron aralioides HOM05D004430 ORTHO05D005088 8.5e-170 602.4 1658 33.7
Ca_16155_v3 Cicer arietinum L. HOM05D004430 ORTHO05D005088 1.1e-169 602.1 1549 35.7
FAN18G1146 Fragaria x ananassa HOM05D004430 ORTHO05D005088 1.1e-169 602.1 1591 36.6
Cc04_g12380 Coffea canephora HOM05D004430 ORTHO05D005088 3.2e-169 600.5 1285 37.6
ClCG06G017130 Citrullus lanatus HOM05D004430 ORTHO05D005088 5.5e-169 599.7 1581 34.5
AUR62008183 Chenopodium quinoa HOM05D004430 ORTHO05D005088 2.3e-167 594.3 1585 34.3
MELO3C026283.2 Cucumis melo HOM05D004430 ORTHO05D005088 3.0e-167 594.0 1568 34.4
Sed0016557 Sechium edule HOM05D004430 ORTHO05D005088 5.2e-167 593.2 1564 34.5
VMungo1215G2998 Vigna mungo HOM05D004430 ORTHO05D005088 2.2e-165 587.8 1668 33.5
SalBow6G6763 Salvia bowleyana HOM05D004430 ORTHO05D005088 4.8e-165 586.6 1631 34.8
Ca_16154_v3 Cicer arietinum L. HOM05D004430 ORTHO05D005088 6.3e-165 586.3 1623 36.0
SalBow6G6905 Salvia bowleyana HOM05D004430 ORTHO05D005088 1.6e-163 581.6 1631 34.7
CANSAT80G0620 Cannabis sativa HOM05D004430 ORTHO05D005088 1.3e-162 578.6 1614 35.4
Sed0007760 Sechium edule HOM05D004430 ORTHO05D005088 8.5e-162 575.9 1556 34.6
Eucgr.B00248 Eucalyptus grandis HOM05D004430 ORTHO05D005088 1.4e-159 568.5 1595 34.9
MSTRG.4361 Avicennia marina HOM05D004430 ORTHO05D005088 1.2e-158 565.5 1605 35.1
THA.LOC104809247 Tarenaya hassleriana HOM05D004430 ORTHO05D005088 1.5e-158 565.1 1551 34.7
Medtr3g077440 Medicago truncatula HOM05D004430 ORTHO05D005088 1.3e-157 562.0 1591 34.4
PGR083G1025 Punica granatum HOM05D004430 ORTHO05D005088 8.3e-157 559.3 1569 34.3
Sc04g0001690 Simmondsia chinensis HOM05D004430 ORTHO05D005088 1.1e-153 548.9 1521 35.3
Glyma.05G039400 Glycine max HOM05D004430 ORTHO05D005088 1.9e-153 548.1 1606 33.3
EL10Ac5g10708 Beta vulgaris HOM05D004430 ORTHO05D005088 1.7e-149 535.0 1606 33.7
Hund02762 Selenicereus undatus HOM05D004430 ORTHO05D005088 3.7e-149 533.9 1558 34.2
THA.LOC104809778 Tarenaya hassleriana HOM05D004430 ORTHO05D005088 3.7e-149 533.9 1535 34.9
SGA_v2.0_scaffold7G04148 Striga asiatica HOM05D004430 ORTHO05D005088 9.5e-145 519.2 1556 34.6
Ah.11g051460 Amaranthus hybridus HOM05D004430 ORTHO05D005088 5.2e-143 513.5 1492 33.2
Phvul.003G202300 Phaseolus vulgaris HOM05D004430 ORTHO05D005088 2.6e-142 511.1 1668 31.4
Nn3g16781 Nelumbo nucifera HOM05D004430 ORTHO05D005088 1.6e-139 501.9 1682 31.9
Psat5g115040 Pisum sativum HOM05D004430 ORTHO05D005088 6.2e-136 490.0 1510 33.1
MBI19_g24062_MAGBIO Magnolia biondii HOM05D004430 ORTHO05D005088 5.2e-135 486.9 1741 31.6
CARHR232060 Cardamine hirsuta HOM05D004430 ORTHO05D005088 3.4e-134 484.2 1502 32.0
AT4G24680 Arabidopsis thaliana HOM05D004430 ORTHO05D005088 4.1e-132 477.2 1487 31.4
Medtr3g077450 Medicago truncatula HOM05D004430 ORTHO05D005088 1.0e-130 472.6 1559 34.1
CiPaw.11G023400 Carya illinoinensis HOM05D004430 ORTHO05D005088 9.5e-129 466.1 1517 31.6
TPR.G28721 Trifolium pratense HOM05D004430 ORTHO05D005088 3.1e-127 461.1 1584 32.1
Aqoxy3G01105 Aquilegia oxysepala HOM05D004430 ORTHO05D005088 1.5e-126 458.8 1466 31.8
AL7G28520 Arabidopsis lyrata HOM05D004430 ORTHO05D005088 1.3e-125 455.7 1471 30.7
Ciclev10018497m.g Citrus clementina HOM05D004430 ORTHO05D005088 4.9e-125 453.8 1437 31.2
Aa31LG4G9770 Aethionema arabicum HOM05D004430 ORTHO05D005088 1.1e-124 452.6 1499 30.5
PGSC0003DMG402018164 Solanum tuberosum HOM05D004430 ORTHO05D005088 1.1e-124 452.6 1343 33.7
Sp7g22670 Schrenkiella parvula HOM05D004430 ORTHO05D005088 2.4e-124 451.4 1501 30.9
A03p55450 Brassica napus HOM05D004430 ORTHO05D005088 3.2e-124 451.1 1494 30.6
BraA03t14619Z Brassica rapa HOM05D004430 ORTHO05D005088 7.1e-124 449.9 1496 30.5
Psat5g115080 Pisum sativum HOM05D004430 ORTHO05D005088 2.5e-121 441.4 1528 31.5
Carub.0007s1638 Capsella rubella HOM05D004430 ORTHO05D005088 4.3e-121 440.7 1494 30.9
Actinidia19338 Actinidia chinensis HOM05D004430 ORTHO05D005088 1.2e-120 439.1 1173 34.5
PSO017G2086 Papaver somniferum HOM05D004430 ORTHO05D005088 2.1e-120 438.3 1663 30.1
C07p53740 Brassica napus HOM05D004430 ORTHO05D005088 1.1e-119 436.0 1478 30.4
Thhalv10024213m.g Eutrema salsugineum HOM05D004430 ORTHO05D005088 1.4e-119 435.6 1559 29.8
BolC7t45865H Brassica oleracea HOM05D004430 ORTHO05D005088 2.0e-118 431.8 1480 30.3
PSO478G3312 Papaver somniferum HOM05D004430 ORTHO05D005088 9.9e-118 429.5 1448 31.6
Thhalv10024214m.g Eutrema salsugineum HOM05D004430 ORTHO05D005088 2.7e-115 421.4 1537 29.9
A01p16020 Brassica napus HOM05D004430 ORTHO05D005088 9.6e-113 412.9 1502 30.0
C01p20010 Brassica napus HOM05D004430 ORTHO05D005088 2.9e-109 401.4 1469 29.5
BolC1t01928H Brassica oleracea HOM05D004430 ORTHO05D005088 6.4e-109 400.2 1488 29.8
BraA01t01536Z Brassica rapa HOM05D004430 ORTHO05D005088 2.4e-108 398.3 1495 29.3
BcaC06g32869 Brassica carinata HOM05D004430 ORTHO05D005088 5.4e-108 397.1 1488 29.1
BcaC09g50842 Brassica carinata HOM05D004430 ORTHO05D005088 4.8e-104 384.0 1440 29.7
CiPaw.12G028500 Carya illinoinensis HOM05D004430 ORTHO05D005088 5.3e-103 380.6 1354 31.4
unitig_37.g12744 Utricularia gibba HOM05D004430 ORTHO05D005088 9.3e-100 369.8 1448 31.4
BcaB03g12441 Brassica carinata HOM05D004430 ORTHO05D005088 1.3e-96 359.4 1430 27.6
arahy.Tifrunner.gnm1.ann1.I95HTR Arachis hypogaea HOM05D004430 ORTHO05D005088 1.6e-96 359.0 770 35.2
ATR0757G157 Amborella trichopoda HOM05D004430 ORTHO05D005088 2.2e-93 348.6 1617 29.3
Hma1.2p1_0046F.1_g026730 Hydrangea macrophylla HOM05D004430 ORTHO05D005088 6.7e-90 337.0 1146 32.2
Actinidia19112 Actinidia chinensis HOM05D004430 ORTHO05D005088 1.1e-84 319.7 343 54.8
TAR622G0490 Trochodendron aralioides HOM05D004430 ORTHO05D005088 2.5e-73 282.0 946 31.8
Zm00001eb136860 Zea mays HOM05D004430 ORTHO05D005088 3.4e-70 271.6 1538 26.6
MBI10_g44386_MAGBIO Magnolia biondii HOM05D004430 ORTHO05D005088 2.1e-67 262.3 1477 28.4
Zm00001eb028710 Zea mays HOM05D004430 ORTHO05D005088 8.5e-61 240.4 1506 27.3
CDE06G0437 Ceratophyllum demersum HOM05D004430 ORTHO05D005088 5.5e-60 237.7 1451 26.6
MBI10_g44384_MAGBIO Magnolia biondii HOM05D004430 ORTHO05D005088 1.2e-59 236.5 201 65.7
Haze_07543 Corylus avellana HOM05D004430 ORTHO05D005088 1.8e-55 222.6 1455 26.3
HPP92_006251 Vanilla planifolia HOM05D004430 ORTHO05D005088 4.1e-55 221.5 1254 27.5
unitig_46.g18473 Utricularia gibba HOM05D004430 ORTHO05D007989 1.7e-53 216.1 1457 26.8
Cpa.g.sc153.6 Carica papaya HOM05D004430 ORTHO05D005088 8.8e-50 203.8 191 63.4
Actinidia33085 Actinidia chinensis HOM05D004430 ORTHO05D005088 2.0e-49 202.6 692 32.4
SHI17143 Sapria himalayana HOM05D004430 ORTHO05D005088 2.2e-48 199.1 765 30.1
HPP92_024337 Vanilla planifolia HOM05D004430 ORTHO05D005088 6.3e-48 197.6 1248 27.5
Actinidia19110 Actinidia chinensis HOM05D005107 ORTHO05D006200 8.0e-43 180.6 426 36.4
CDE02G0036 Ceratophyllum demersum HOM05D004430 ORTHO05D005088 2.8e-40 172.2 203 50.7
HPP92_006241 Vanilla planifolia HOM05D004430 ORTHO05D005088 1.8e-39 169.5 215 59.1
SEGI_40513 Sequoiadendron giganteum HOM05D004430 ORTHO05D005088 2.2e-32 146.0 1486 24.1
SMO174G0145 Selaginella moellendorffii HOM05D004430 ORTHO05D005088 1.4e-31 143.3 820 29.4
HPP92_024330 Vanilla planifolia HOM05D004430 ORTHO05D005088 1.0e-29 137.1 1244 25.6
TAR622G0342 Trochodendron aralioides HOM05D004430 ORTHO05D005088 3.6e-27 128.6 82 76.8
Actinidia19111 Actinidia chinensis HOM05D004430 ORTHO05D005088 1.4e-26 126.7 497 31.6
Mapoly0057s0099 Marchantia polymorpha HOM05D004430 ORTHO05D005088 1.5e-25 123.2 263 47.9
Actinidia33086 Actinidia chinensis HOM05D004430 ORTHO05D005088 1.1e-20 107.1 352 29.8
Pp3c26_2830 Physcomitrium patens HOM05D004430 ORTHO05D005088 1.9e-20 106.3 482 35.9
Psat2g086200 Pisum sativum HOM05D004430 ORTHO05D005088 1.1e-18 100.5 229 36.2
Pp3c26_2670 Physcomitrium patens HOM05D004430 ORTHO05D005088 2.0e-17 96.3 235 40.9
Pp3c4_23740 Physcomitrium patens HOM05D004430 ORTHO05D005088 2.6e-17 95.9 1422 23.9
Pp3c4_22960 Physcomitrium patens HOM05D004430 ORTHO05D005088 2.9e-16 92.4 970 26.1
Psat2g098600 Pisum sativum HOM05D003093 ORTHO05D005088 6.4e-16 91.3 149 41.6
Psat2g086240 Pisum sativum HOM05D004430 ORTHO05D005088 4.1e-15 88.6 404 26.5
AagrBONN_evm.TU.Sc2ySwM_344.4397 Anthoceros agrestis HOM05D004430 ORTHO05D005088 3.0e-13 82.4 1193 25.6
Lsat_1_v5_gn_0_32021 Lactuca sativa HOM05D000147 ORTHO05D013131 3.0e-13 82.4 76 59.2
Actinidia19337 Actinidia chinensis HOM05D004430 ORTHO05D005088 5.6e-12 78.2 167 37.7
CBR_g19277 Chara braunii HOM05D004430 ORTHO05D005088 1.8e-10 73.2 608 28.5
TAR622G0951 Trochodendron aralioides HOM05D004430 ORTHO05D005088 1.5e-09 70.1 161 34.8
TAR629G1829 Trochodendron aralioides HOM05D003072 ORTHO05D008464 3.7e-08 65.5 126 40.5
BcaC06g32868 Brassica carinata HOM05D003157 ORTHO05D004447 1.9e-07 63.2 54 66.7
C07p53750 Brassica napus HOM05D003157 ORTHO05D004447 1.9e-07 63.2 54 66.7


User provided reference genes

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