Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA232G4104 Erigeron canadensis HOM05D002465 ORTHO05D005308 0.0e+00 1199.1 590 100.0
HanXRQChr15g0494161 Helianthus annuus HOM05D002465 ORTHO05D005308 6.9e-278 960.3 590 82.2
Lsat_1_v5_gn_9_56800 Lactuca sativa HOM05D002465 ORTHO05D005308 3.6e-271 937.9 586 79.7
Dinv35264 Davidia involucrata HOM05D002465 ORTHO05D005308 3.1e-214 748.8 611 63.0
QL09p012529 Quercus lobata HOM05D002465 ORTHO05D005308 7.7e-213 744.2 614 63.2
Actinidia34161 Actinidia chinensis HOM05D002465 ORTHO05D005308 1.2e-210 736.9 606 62.2
Nitab4.5_0007593g0010 Nicotiana tabacum HOM05D002465 ORTHO05D005308 1.4e-206 723.4 590 64.1
Haze_00055 Corylus avellana HOM05D002465 ORTHO05D005308 2.4e-206 722.6 623 60.7
GSVIVG01028829001 Vitis vinifera HOM05D002465 ORTHO05D005308 1.3e-204 716.8 606 62.2
Cc02_g02290 Coffea canephora HOM05D002465 ORTHO05D005308 5.0e-204 714.9 618 59.9
Sopen12g022610 Solanum pennellii HOM05D002465 ORTHO05D005308 5.0e-204 714.9 595 63.2
CAN.G290.13 Capsicum annuum HOM05D002465 ORTHO05D005308 6.6e-204 714.5 596 61.2
Thecc.03G185500 Theobroma cacao HOM05D002465 ORTHO05D005308 3.6e-202 708.8 608 60.4
TWI23G1289 Tripterygium wilfordii HOM05D002465 ORTHO05D005308 6.8e-201 704.5 596 61.4
Migut.F00281 Erythranthe guttata HOM05D002465 ORTHO05D005308 1.2e-200 703.7 593 62.1
Sabra17G0123700 Salix brachista HOM05D002465 ORTHO05D005308 4.4e-200 701.8 625 59.8
Oeu036031.1 Olea europaea HOM05D002465 ORTHO05D005308 2.9e-199 699.1 594 61.6
Potri.017G148000 Populus trichocarpa HOM05D002465 ORTHO05D005308 8.3e-199 697.6 603 60.7
MD01G1209800 Malus domestica HOM05D002465 ORTHO05D005308 1.4e-198 696.8 591 61.3
Prupe.2G301900 Prunus persica HOM05D002465 ORTHO05D005308 1.8e-198 696.4 592 61.7
Sabra17G0123300 Salix brachista HOM05D002465 ORTHO05D005308 1.6e-197 693.3 626 58.8
Gorai.008G274000 Gossypium raimondii HOM05D002465 ORTHO05D005308 2.7e-197 692.6 602 60.1
EL10Ac3g05400 Beta vulgaris HOM05D002465 ORTHO05D005308 4.6e-197 691.8 595 59.0
FAN10G1194 Fragaria x ananassa HOM05D002465 ORTHO05D005308 4.6e-197 691.8 591 62.1
Nitab4.5_0008234g0010 Nicotiana tabacum HOM05D002465 ORTHO05D005308 4.6e-197 691.8 599 61.1
RcHm_v2.0_Chr1g0378531 Rosa chinensis HOM05D002465 ORTHO05D005308 1.7e-196 689.9 596 61.7
Manes.06G153300 Manihot esculenta HOM05D002465 ORTHO05D005308 3.9e-196 688.7 608 60.2
Medtr6g052330 Medicago truncatula HOM05D002465 ORTHO05D005308 5.0e-196 688.3 615 58.7
Cfa016295 Carpinus fangiana HOM05D002465 ORTHO05D005308 1.1e-195 687.2 599 59.4
DCAR_008895 Daucus carota HOM05D002465 ORTHO05D005308 1.5e-195 686.8 633 56.7
SGA_v2.0_scaffold60G21117 Striga asiatica HOM05D002465 ORTHO05D005308 1.9e-195 686.4 636 56.0
Lj1C1006G4 Lonicera japonica HOM05D002465 ORTHO05D005308 7.3e-195 684.5 539 64.6
FAN06G3650 Fragaria x ananassa HOM05D002465 ORTHO05D005308 1.6e-194 683.3 593 61.4
FAN06G0430 Fragaria x ananassa HOM05D002465 ORTHO05D005308 3.6e-194 682.2 593 61.2
Aqoxy5G04085 Aquilegia oxysepala HOM05D002465 ORTHO05D005308 5.2e-193 678.3 613 59.1
FvH4_7g30390 Fragaria vesca HOM05D002465 ORTHO05D005308 6.8e-193 677.9 566 62.5
Sc13g0009230 Simmondsia chinensis HOM05D002465 ORTHO05D005308 3.4e-192 675.6 590 57.8
SalBow4G2218 Salvia bowleyana HOM05D002465 ORTHO05D005308 9.8e-192 674.1 588 59.2
Eucgr.A02722 Eucalyptus grandis HOM05D002465 ORTHO05D005308 2.2e-191 672.9 597 60.5
TAR374G1583 Trochodendron aralioides HOM05D002465 ORTHO05D005308 2.9e-191 672.5 529 65.0
Cpa.g.sc107.121 Carica papaya HOM05D002465 ORTHO05D005308 1.4e-190 670.2 612 58.5
Gohir.D12G255900 Gossypium hirsutum HOM05D002465 ORTHO05D005308 1.4e-190 670.2 589 60.6
COL.COLO4_30301 Corchorus olitorius HOM05D002465 ORTHO05D005308 4.1e-190 668.7 593 59.9
FAN10G1435 Fragaria x ananassa HOM05D002465 ORTHO05D005308 4.1e-190 668.7 583 61.2
A02p11610 Brassica napus HOM05D002465 ORTHO05D005308 6.6e-188 661.4 593 58.2
BraA02t06223Z Brassica rapa HOM05D002465 ORTHO05D005308 8.6e-188 661.0 593 58.2
BcaB05g21981 Brassica carinata HOM05D002465 ORTHO05D005308 1.1e-187 660.6 598 57.9
FAN03G3136 Fragaria x ananassa HOM05D002465 ORTHO05D005308 5.6e-187 658.3 597 59.5
Carub.0008s1296 Capsella rubella HOM05D002465 ORTHO05D005308 7.3e-187 657.9 597 57.8
Ciclev10006841m.g Citrus clementina HOM05D002465 ORTHO05D005308 2.8e-186 656.0 611 57.9
C02p19370 Brassica napus HOM05D002465 ORTHO05D005308 4.7e-186 655.2 593 57.8
Lj2g0016146 Lotus japonicus HOM05D002465 ORTHO05D005308 1.1e-185 654.1 624 57.2
Thhalv10012991m.g Eutrema salsugineum HOM05D002465 ORTHO05D005308 1.4e-185 653.7 597 58.3
BcaC03g14499 Brassica carinata HOM05D002465 ORTHO05D005308 4.0e-185 652.1 593 57.7
Rhsim03G0191700 Rhododendron simsii HOM05D002465 ORTHO05D005308 1.2e-184 650.6 513 63.9
THA.LOC104811947 Tarenaya hassleriana HOM05D002465 ORTHO05D005308 2.0e-184 649.8 580 57.6
AUR62021107 Chenopodium quinoa HOM05D002465 ORTHO05D005308 1.3e-183 647.1 564 58.7
TPR.G9187 Trifolium pratense HOM05D002465 ORTHO05D005308 6.4e-183 644.8 619 56.7
BolC2t08072H Brassica oleracea HOM05D002465 ORTHO05D005308 1.1e-182 644.0 568 59.3
Lalb_Chr19g0130571 Lupinus albus HOM05D002465 ORTHO05D005308 3.2e-182 642.5 608 55.4
PSO170G2577 Papaver somniferum HOM05D002465 ORTHO05D005308 9.2e-182 641.0 608 56.1
Nn1g01670 Nelumbo nucifera HOM05D002465 ORTHO05D005308 1.0e-180 637.5 495 65.1
AL8G27230 Arabidopsis lyrata HOM05D002465 ORTHO05D005308 1.3e-180 637.1 595 58.2
Glyma.09G129600 Glycine max HOM05D002465 ORTHO05D005308 1.3e-180 637.1 619 54.9
Hund04793 Selenicereus undatus HOM05D002465 ORTHO05D005308 1.3e-180 637.1 590 56.1
AUR62031432 Chenopodium quinoa HOM05D002465 ORTHO05D005308 3.0e-180 636.0 597 56.6
PGR042G3288 Punica granatum HOM05D002465 ORTHO05D005308 7.3e-179 631.3 593 56.2
CiPaw.05G261600 Carya illinoinensis HOM05D002465 ORTHO05D005308 1.2e-178 630.6 500 66.4
Sp6g14950 Schrenkiella parvula HOM05D002465 ORTHO05D005308 1.2e-178 630.6 596 56.9
Duzib205G0901 Durio zibethinus HOM05D002465 ORTHO05D005308 2.1e-178 629.8 602 56.6
vmacro06621 Vaccinium macrocarpon HOM05D002465 ORTHO05D005308 1.8e-177 626.7 470 68.7
CsaV3_3G017530 Cucumis sativus L. HOM05D002465 ORTHO05D005308 5.2e-177 625.2 611 56.0
Sed0022656 Sechium edule HOM05D002465 ORTHO05D005308 5.2e-177 625.2 613 56.1
ClCG05G008450 Citrullus lanatus HOM05D002465 ORTHO05D005308 4.9e-175 618.6 615 55.6
Psat0s1684g0080 Pisum sativum HOM05D002465 ORTHO05D005308 5.4e-174 615.1 587 56.6
Gohir.A12G253600 Gossypium hirsutum HOM05D002465 ORTHO05D005308 7.1e-174 614.8 603 55.1
AT5G52800 Arabidopsis thaliana HOM05D002465 ORTHO05D005308 1.0e-172 610.9 601 55.1
Hma1.2p1_0274F.1_g110040 Hydrangea macrophylla HOM05D002465 ORTHO05D005308 1.3e-172 610.5 553 58.8
Aa31LG3G9040 Aethionema arabicum HOM05D002465 ORTHO05D005308 1.7e-172 610.1 659 49.9
unitig_52.g17726 Utricularia gibba HOM05D002465 ORTHO05D005308 1.1e-171 607.4 560 56.8
Ah.07g206490 Amaranthus hybridus HOM05D002465 ORTHO05D005308 2.0e-168 596.7 588 53.9
MBI04_g26956_MAGBIO Magnolia biondii HOM05D002465 ORTHO05D005308 1.4e-166 590.5 514 59.9
FAN01G1269 Fragaria x ananassa HOM05D002465 ORTHO05D005308 3.3e-163 579.3 619 53.5
Os07g0467900 Oryza sativa ssp. japonica HOM05D002465 ORTHO05D005308 2.4e-161 573.2 606 52.0
ATR0661G279 Amborella trichopoda HOM05D002465 ORTHO05D005308 1.0e-156 557.8 578 51.4
DCAR_029292 Daucus carota HOM05D002465 ORTHO05D005308 2.3e-156 556.6 468 57.1
Atru.BG.183.p Acer truncatum HOM05D002465 ORTHO05D005308 3.0e-156 556.2 490 61.2
DCAR_018565 Daucus carota HOM05D002465 ORTHO05D005308 7.4e-155 551.6 482 55.8
Phvul.004G106200 Phaseolus vulgaris HOM05D002465 ORTHO05D005308 1.4e-153 547.4 503 56.9
MELO3C006956.2 Cucumis melo HOM05D002465 ORTHO05D005308 1.5e-152 543.9 608 51.6
arahy.Tifrunner.gnm1.ann1.77GMEU Arachis hypogaea HOM05D002465 ORTHO05D005308 2.6e-152 543.1 606 52.8
Peaxi162Scf00023g00823 Petunia axillaris HOM05D002465 ORTHO05D005308 1.3e-151 540.8 429 64.6
SHI09096 Sapria himalayana HOM05D002465 ORTHO05D005308 1.6e-149 533.9 459 59.3
HPP92_015081 Vanilla planifolia HOM05D002465 ORTHO05D005308 9.6e-147 524.6 488 57.8
arahy.Tifrunner.gnm1.ann1.TJ5MNL Arachis hypogaea HOM05D002465 ORTHO05D005308 2.1e-141 506.9 448 58.7
Medtr6g052340 Medicago truncatula HOM05D002465 ORTHO05D005308 1.9e-139 500.4 420 59.3
Pp3c1_12340 Physcomitrium patens HOM05D002465 ORTHO05D005308 6.5e-135 485.3 581 44.8
Mapoly0051s0060 Marchantia polymorpha HOM05D002465 ORTHO05D005308 1.1e-134 484.6 537 46.0
CSS0029570 Camellia sinensis var. sinensis HOM05D002465 ORTHO05D005308 2.5e-126 456.8 349 66.2
AagrBONN_evm.TU.Sc2ySwM_228.3313 Anthoceros agrestis HOM05D002465 ORTHO05D005308 7.9e-125 451.8 639 39.6
MSTRG.8702 Avicennia marina HOM05D002465 ORTHO05D005308 4.4e-123 446.0 333 68.2
RcHm_v2.0_Chr3g0497461 Rosa chinensis HOM05D002465 ORTHO05D005308 2.6e-115 420.2 367 60.8
Ca_26606_v3 Cicer arietinum L. HOM05D002465 ORTHO05D005308 1.9e-110 404.1 594 43.8
Sabra17G0121400 Salix brachista HOM05D002465 ORTHO05D005308 2.0e-107 394.0 282 71.3
SMO103G0001 Selaginella moellendorffii HOM05D002465 ORTHO05D005308 1.6e-104 384.4 403 49.9
CBR_g36403 Chara braunii HOM05D002465 ORTHO05D005308 4.4e-99 366.3 476 42.4
CANSAT21G2443 Cannabis sativa HOM05D002465 ORTHO05D005308 7.8e-88 328.9 320 55.6
VMungo0464G1215 Vigna mungo HOM05D002465 ORTHO05D005308 1.6e-80 304.7 287 55.4
DCAR_005086 Daucus carota HOM05D002465 ORTHO05D005308 6.2e-69 266.2 332 42.8
MSTRG.8701 Avicennia marina HOM05D002465 ORTHO05D005308 1.5e-67 261.5 239 55.6
MCO12G313 Micromonas commoda HOM05D002465 ORTHO05D005308 2.6e-67 260.8 407 36.6
SEGI_25618 Sequoiadendron giganteum HOM05D002465 ORTHO05D005308 2.9e-66 257.3 220 56.4
DCAR_030059 Daucus carota HOM05D002465 ORTHO05D005308 1.2e-64 251.9 181 64.1
FAN05G2518 Fragaria x ananassa HOM05D002465 ORTHO05D005308 4.7e-61 240.0 159 74.2
FAN09G4610 Fragaria x ananassa HOM05D002465 ORTHO05D005308 4.7e-61 240.0 159 74.2
FAN10G2552 Fragaria x ananassa HOM05D002465 ORTHO05D005308 4.7e-61 240.0 159 74.2
FAN25G3664 Fragaria x ananassa HOM05D002465 ORTHO05D005308 4.7e-61 240.0 159 74.2
DCAR_029376 Daucus carota HOM05D002465 ORTHO05D005308 2.4e-57 227.6 154 65.6
Oeu058603.1 Olea europaea HOM05D002465 ORTHO05D005308 1.7e-55 221.5 185 62.7
Zm00001eb320240 Zea mays HOM05D002465 ORTHO05D005308 1.2e-53 215.3 273 45.4
CSS0047166 Camellia sinensis var. sinensis HOM05D002465 ORTHO05D005308 1.3e-50 205.3 220 51.8
MD01G1209700 Malus domestica HOM05D002465 ORTHO05D005308 2.9e-50 204.1 226 53.1
PRCOL_00005773 Prasinoderma coloniale HOM05D002465 ORTHO05D005308 1.7e-42 178.3 530 29.1
HPP92_028543 Vanilla planifolia HOM05D002465 ORTHO05D005308 6.0e-40 169.9 159 54.1
Actinidia08585 Actinidia chinensis HOM05D002465 ORTHO05D005308 1.3e-37 162.2 98 74.5
Actinidia08586 Actinidia chinensis HOM05D002465 ORTHO05D008860 6.2e-37 159.8 242 42.6
Psat0s1616g0040 Pisum sativum HOM05D002465 ORTHO05D005308 2.4e-33 147.9 114 70.2
FAN03G1432 Fragaria x ananassa HOM05D002465 ORTHO05D005308 6.0e-32 143.3 157 51.6
FAN09G0727 Fragaria x ananassa HOM05D002465 ORTHO05D005308 6.0e-32 143.3 157 51.6
FAN09G3189 Fragaria x ananassa HOM05D002465 ORTHO05D005308 6.0e-32 143.3 157 51.6
FAN14G0324 Fragaria x ananassa HOM05D002465 ORTHO05D005308 6.0e-32 143.3 157 51.6
FAN16G1547 Fragaria x ananassa HOM05D002465 ORTHO05D005308 6.0e-32 143.3 157 51.6
FAN21G0521 Fragaria x ananassa HOM05D002465 ORTHO05D005308 6.0e-32 143.3 157 51.6
FAN22G1212 Fragaria x ananassa HOM05D002465 ORTHO05D005308 6.0e-32 143.3 157 51.6
FAN25G1827 Fragaria x ananassa HOM05D002465 ORTHO05D005308 6.0e-32 143.3 157 51.6
FAN25G2717 Fragaria x ananassa HOM05D002465 ORTHO05D005308 6.0e-32 143.3 157 51.6
FAN27G0148 Fragaria x ananassa HOM05D002465 ORTHO05D005308 6.0e-32 143.3 157 51.6
FAN27G0541 Fragaria x ananassa HOM05D002465 ORTHO05D005308 6.0e-32 143.3 157 51.6
FAN27G0848 Fragaria x ananassa HOM05D002465 ORTHO05D005308 6.0e-32 143.3 157 51.6
FAN28G0992 Fragaria x ananassa HOM05D002465 ORTHO05D005308 6.0e-32 143.3 157 51.6
SEGI_28877 Sequoiadendron giganteum HOM05D002465 ORTHO05D005308 6.7e-31 139.8 138 45.7
vmacro06620 Vaccinium macrocarpon HOM05D002465 ORTHO05D005308 2.5e-30 137.9 140 47.9
Cre17.g705150 Chlamydomonas reinhardtii HOM05D002465 ORTHO05D005308 6.2e-29 133.3 363 26.7
DCAR_030105 Daucus carota HOM05D002465 ORTHO05D005308 2.6e-27 127.9 218 33.9
RcHm_v2.0_Chr1g0361031 Rosa chinensis HOM05D002465 ORTHO05D005308 2.5e-25 121.3 76 71.1
CBR_g81559 Chara braunii HOM05D002465 ORTHO05D005308 7.1e-25 119.8 172 37.8
CBR_g19350 Chara braunii HOM05D000019 ORTHO05D000048 1.5e-19 102.1 190 31.6
Rhsim10G0052100 Rhododendron simsii HOM05D002465 ORTHO05D036401 9.4e-17 92.8 92 64.1
FAN23G0684 Fragaria x ananassa HOM05D002465 ORTHO05D000592 7.9e-16 89.7 157 37.6
Sabra18G0007300 Salix brachista HOM05D002718 ORTHO05D003269 3.0e-15 87.8 70 74.3
Sabra17G0121500 Salix brachista HOM05D002465 ORTHO05D005308 8.8e-15 86.3 131 42.0
Nitab4.5_0007593g0030 Nicotiana tabacum HOM05D002465 ORTHO05D005308 5.7e-14 83.6 45 80.0
PSO063G0346 Papaver somniferum HOM05D002465 ORTHO05D005308 4.1e-12 77.4 116 37.9
Cre12.g553253 Chlamydomonas reinhardtii HOM05D002465 ORTHO05D145954 1.5e-11 75.5 91 38.5
MBI04_g15062_MAGBIO Magnolia biondii HOM05D002465 ORTHO05D005308 3.3e-06 57.8 159 34.0
CBR_g47978 Chara braunii HOM05D002465 ORTHO05D005308 7.4e-06 56.6 100 30.0


User provided reference genes

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