Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA232G3603 Erigeron canadensis HOM05D005744 ORTHO05D007503 4.2e-245 850.9 427 100.0
Lsat_1_v5_gn_4_80081 Lactuca sativa HOM05D005744 ORTHO05D007503 8.4e-209 730.3 423 83.9
HanXRQChr16g0498211 Helianthus annuus HOM05D005744 ORTHO05D007503 2.1e-207 725.7 424 83.7
CSS0041302 Camellia sinensis var. sinensis HOM05D005744 ORTHO05D007503 1.1e-179 633.6 424 72.6
GSVIVG01008538001 Vitis vinifera HOM05D005744 ORTHO05D007503 1.4e-176 623.2 426 71.4
Rhsim08G0189700 Rhododendron simsii HOM05D005744 ORTHO05D007503 2.7e-175 619.0 421 74.3
Cc08_g16880 Coffea canephora HOM05D005744 ORTHO05D007503 4.6e-175 618.2 423 71.2
RhsimUnG0231400 Rhododendron simsii HOM05D005744 ORTHO05D007503 7.9e-175 617.5 421 74.6
Oeu010732.1 Olea europaea HOM05D005744 ORTHO05D007503 1.3e-174 616.7 428 69.4
COL.COLO4_28103 Corchorus olitorius HOM05D005744 ORTHO05D007503 1.5e-173 613.2 425 72.5
Manes.14G051500 Manihot esculenta HOM05D005744 ORTHO05D007503 1.5e-173 613.2 426 69.7
DCAR_021616 Daucus carota HOM05D005744 ORTHO05D007503 3.3e-173 612.1 435 69.7
MSTRG.13706 Avicennia marina HOM05D005744 ORTHO05D007503 1.3e-172 610.1 423 69.0
Migut.E00304 Erythranthe guttata HOM05D005744 ORTHO05D007503 2.8e-172 609.0 420 70.7
Gorai.008G206000 Gossypium raimondii HOM05D005744 ORTHO05D007503 8.2e-172 607.4 425 70.4
Gohir.D12G191700 Gossypium hirsutum HOM05D005744 ORTHO05D007503 2.4e-171 605.9 424 69.8
Peaxi162Scf00074g00136 Petunia axillaris HOM05D005744 ORTHO05D007503 3.1e-171 605.5 424 70.0
Gohir.A12G189400 Gossypium hirsutum HOM05D005744 ORTHO05D007503 5.3e-171 604.7 424 69.6
Atru.chr9.1122 Acer truncatum HOM05D005744 ORTHO05D007503 7.7e-170 600.9 426 68.8
CiPaw.11G008100 Carya illinoinensis HOM05D005744 ORTHO05D007503 7.7e-170 600.9 423 69.5
Ciclev10020324m.g Citrus clementina HOM05D005744 ORTHO05D007503 7.2e-168 594.3 422 68.0
Nitab4.5_0002720g0090 Nicotiana tabacum HOM05D005744 ORTHO05D007503 1.6e-167 593.2 456 66.0
QL10p003203 Quercus lobata HOM05D005744 ORTHO05D007503 2.1e-167 592.8 423 70.9
Cfa018827 Carpinus fangiana HOM05D005744 ORTHO05D007503 4.6e-167 591.7 425 69.9
Thecc.03G128600 Theobroma cacao HOM05D005744 ORTHO05D007503 4.6e-167 591.7 425 68.7
Potri.015G095400 Populus trichocarpa HOM05D005744 ORTHO05D007503 1.0e-166 590.5 419 69.0
PGSC0003DMG400012114 Solanum tuberosum HOM05D005744 ORTHO05D007503 1.0e-166 590.5 424 68.4
Prupe.5G151700 Prunus persica HOM05D005744 ORTHO05D007503 3.9e-166 588.6 417 70.0
Solyc08g083260.3 Solanum lycopersicum HOM05D005744 ORTHO05D007503 1.1e-165 587.0 431 67.3
Sopen08g031450 Solanum pennellii HOM05D005744 ORTHO05D007503 1.5e-165 586.6 431 67.3
Sed0005313 Sechium edule HOM05D005744 ORTHO05D007503 9.7e-165 583.9 429 65.7
ClCG06G017860 Citrullus lanatus HOM05D005744 ORTHO05D007503 1.3e-164 583.6 434 65.0
Nn3g16475 Nelumbo nucifera HOM05D005744 ORTHO05D007503 1.7e-164 583.2 422 66.8
MD14G1157700 Malus domestica HOM05D005744 ORTHO05D007503 1.1e-163 580.5 422 68.7
CANSAT80G0573 Cannabis sativa HOM05D005744 ORTHO05D007503 1.8e-163 579.7 424 67.0
Actinidia25578 Actinidia chinensis HOM05D005744 ORTHO05D007503 2.4e-163 579.3 385 75.3
Sabra15G0116400 Salix brachista HOM05D005744 ORTHO05D007503 3.1e-163 578.9 424 67.5
Psat5g140680 Pisum sativum HOM05D005744 ORTHO05D007503 5.3e-163 578.2 423 65.7
CsaV3_1G000590 Cucumis sativus L. HOM05D005744 ORTHO05D007503 1.5e-162 576.6 430 64.7
vmacro19203 Vaccinium macrocarpon HOM05D005744 ORTHO05D007503 1.5e-162 576.6 478 63.2
THA.LOC104825016 Tarenaya hassleriana HOM05D005744 ORTHO05D007503 3.4e-162 575.5 421 66.3
MELO3C026209.2 Cucumis melo HOM05D005744 ORTHO05D007503 5.9e-162 574.7 434 64.5
arahy.Tifrunner.gnm1.ann1.DQ5P63 Arachis hypogaea HOM05D005744 ORTHO05D007503 1.0e-161 573.9 424 66.5
arahy.Tifrunner.gnm1.ann1.SJIN4P Arachis hypogaea HOM05D005744 ORTHO05D007503 1.3e-161 573.5 426 66.2
BraA03t14628Z Brassica rapa HOM05D005744 ORTHO05D007503 1.7e-161 573.2 424 65.3
SalBow5G0293 Salvia bowleyana HOM05D005744 ORTHO05D007503 1.7e-161 573.2 423 68.1
CARHR232280 Cardamine hirsuta HOM05D005744 ORTHO05D007503 5.0e-161 571.6 423 65.5
Aqoxy3G01542 Aquilegia oxysepala HOM05D005744 ORTHO05D007503 1.6e-159 566.6 424 64.9
AL7G28320 Arabidopsis lyrata HOM05D005744 ORTHO05D007503 1.6e-159 566.6 421 65.3
C07p53850 Brassica napus HOM05D005744 ORTHO05D007503 2.7e-159 565.8 424 64.4
A03p55610 Brassica napus HOM05D005744 ORTHO05D007503 4.7e-159 565.1 427 64.9
Carub.0007s1619 Capsella rubella HOM05D005744 ORTHO05D007503 7.9e-159 564.3 421 64.6
BcaC06g32852 Brassica carinata HOM05D005744 ORTHO05D007503 1.4e-158 563.5 427 64.2
Actinidia33099 Actinidia chinensis HOM05D005744 ORTHO05D007503 3.0e-158 562.4 341 77.4
Sp7g22860 Schrenkiella parvula HOM05D005744 ORTHO05D007503 3.9e-158 562.0 421 63.9
EL10As4g23384 Beta vulgaris HOM05D005744 ORTHO05D007503 5.1e-158 561.6 425 65.2
Ca_24503_v3 Cicer arietinum L. HOM05D005744 ORTHO05D007503 5.1e-158 561.6 424 65.3
Lalb_Chr08g0237111 Lupinus albus HOM05D005744 ORTHO05D007503 6.7e-158 561.2 423 63.1
BolC7t45875H Brassica oleracea HOM05D005744 ORTHO05D007503 1.1e-157 560.5 427 63.9
Medtr3g074980 Medicago truncatula HOM05D005744 ORTHO05D007503 1.5e-157 560.1 425 64.7
Thhalv10025348m.g Eutrema salsugineum HOM05D005744 ORTHO05D007503 2.0e-157 559.7 415 64.1
Lj1g0015277 Lotus japonicus HOM05D005744 ORTHO05D007503 3.3e-157 558.9 424 64.2
TPR.G26152 Trifolium pratense HOM05D005744 ORTHO05D007503 1.4e-155 553.5 424 63.9
HPP92_020223 Vanilla planifolia HOM05D005744 ORTHO05D007503 1.4e-155 553.5 430 61.6
Dinv11169 Davidia involucrata HOM05D005744 ORTHO05D007503 3.1e-155 552.4 425 66.4
VMungo1309G1043 Vigna mungo HOM05D005744 ORTHO05D007503 3.1e-155 552.4 429 65.0
PSO782G2798 Papaver somniferum HOM05D005744 ORTHO05D007503 5.3e-155 551.6 418 64.1
Duzib205G1133 Durio zibethinus HOM05D005744 ORTHO05D007503 7.0e-155 551.2 422 64.9
PGR044G2189 Punica granatum HOM05D005744 ORTHO05D007503 7.0e-155 551.2 387 69.8
Haze_07221 Corylus avellana HOM05D005744 ORTHO05D007503 1.5e-154 550.1 488 59.8
PSO339G3552 Papaver somniferum HOM05D005744 ORTHO05D007503 3.4e-154 548.9 417 64.0
Phvul.009G166600 Phaseolus vulgaris HOM05D005744 ORTHO05D007503 3.4e-154 548.9 433 64.0
Lj9A478G92 Lonicera japonica HOM05D005744 ORTHO05D007503 4.5e-154 548.5 391 70.8
PSO801G0019 Papaver somniferum HOM05D005744 ORTHO05D007503 1.0e-153 547.4 420 64.3
TPR.G12158 Trifolium pratense HOM05D005744 ORTHO05D007503 8.5e-153 544.3 425 64.7
Glyma.06G170500 Glycine max HOM05D005744 ORTHO05D007503 4.2e-152 542.0 423 63.1
Ah.02g114920 Amaranthus hybridus HOM05D005744 ORTHO05D007503 7.2e-152 541.2 451 63.2
CAN.G567.98 Capsicum annuum HOM05D005744 ORTHO05D007503 1.2e-151 540.4 447 63.1
RcHm_v2.0_Chr7g0190291 Rosa chinensis HOM05D005744 ORTHO05D007503 3.6e-151 538.9 417 62.8
FAN18G3767 Fragaria x ananassa HOM05D005744 ORTHO05D007503 6.7e-150 534.6 419 64.7
FvH4_5g08230 Fragaria vesca HOM05D005744 ORTHO05D007503 1.7e-148 530.0 419 64.4
AUR62029618 Chenopodium quinoa HOM05D005744 ORTHO05D007503 4.8e-148 528.5 391 66.2
AUR62025939 Chenopodium quinoa HOM05D005744 ORTHO05D007503 6.3e-148 528.1 393 65.6
MBI07_g31012_MAGBIO Magnolia biondii HOM05D005744 ORTHO05D007503 1.4e-147 526.9 426 63.8
FAN08G2910 Fragaria x ananassa HOM05D005744 ORTHO05D007503 9.1e-147 524.2 417 63.5
CDE05G2332 Ceratophyllum demersum HOM05D005744 ORTHO05D007503 2.6e-146 522.7 421 61.0
Eucgr.K02730 Eucalyptus grandis HOM05D005744 ORTHO05D007503 4.5e-146 521.9 442 60.6
SGA_v2.0_scaffold22G09828 Striga asiatica HOM05D005744 ORTHO05D007503 4.5e-146 521.9 417 63.1
FAN13G0489 Fragaria x ananassa HOM05D005744 ORTHO05D007503 2.5e-144 516.2 457 57.8
ATR0561G060 Amborella trichopoda HOM05D005744 ORTHO05D007503 1.2e-143 513.8 418 60.5
Os01g0101300 Oryza sativa ssp. japonica HOM05D005744 ORTHO05D007503 3.1e-139 499.2 423 60.0
TAR629G2476 Trochodendron aralioides HOM05D005744 ORTHO05D007503 4.2e-136 488.8 334 69.8
AT4G24880 Arabidopsis thaliana HOM05D005744 ORTHO05D007503 2.7e-130 469.5 337 66.5
TAR633G0019 Trochodendron aralioides HOM05D005744 ORTHO05D007503 3.5e-130 469.2 302 71.2
RcHm_v2.0_Chr4g0409241 Rosa chinensis HOM05D005744 ORTHO05D007503 1.0e-129 467.6 420 57.6
Sc04g0000680 Simmondsia chinensis HOM05D005744 ORTHO05D007503 1.7e-129 466.8 300 70.3
Glyma.04G195500 Glycine max HOM05D005744 ORTHO05D007503 1.5e-128 463.8 318 67.9
Aa31LG7G10960 Aethionema arabicum HOM05D005744 ORTHO05D007503 6.8e-126 454.9 301 71.8
Zm00001eb354570 Zea mays HOM05D005744 ORTHO05D007503 1.2e-125 454.1 418 57.9
Cpa.g.sc2981.2 Carica papaya HOM05D005744 ORTHO05D007503 1.5e-125 453.8 311 71.1
unitig_27.g25288 Utricularia gibba HOM05D005744 ORTHO05D007503 4.4e-125 452.2 426 54.2
SalBow5G5674 Salvia bowleyana HOM05D005744 ORTHO05D007503 6.3e-124 448.4 423 57.0
PSO478G2520 Papaver somniferum HOM05D005744 ORTHO05D007503 8.3e-124 448.0 330 65.8
Mapoly0024s0037 Marchantia polymorpha HOM05D005744 ORTHO05D007503 4.4e-117 425.6 422 50.9
FvH4_4g11820 Fragaria vesca HOM05D005744 ORTHO05D007503 1.3e-116 424.1 420 53.3
FAN07G2643 Fragaria x ananassa HOM05D005744 ORTHO05D007503 2.4e-115 419.9 326 62.6
Pp3c8_11540 Physcomitrium patens HOM05D005744 ORTHO05D007503 5.2e-110 402.1 427 47.5
SMO364G0648 Selaginella moellendorffii HOM05D005744 ORTHO05D007503 2.6e-109 399.8 405 48.9
Nitab4.5_0000479g0030 Nicotiana tabacum HOM05D005744 ORTHO05D007503 1.1e-102 377.9 278 68.3
FAN12G3536 Fragaria x ananassa HOM05D005744 ORTHO05D007503 3.0e-97 359.8 319 57.1
SEGI_05259 Sequoiadendron giganteum HOM05D005744 ORTHO05D007503 4.4e-93 345.9 316 53.8
FAN12G3591 Fragaria x ananassa HOM05D005744 ORTHO05D007503 1.0e-89 334.7 301 56.1
Eucgr.L02977 Eucalyptus grandis HOM05D005744 ORTHO05D007503 1.3e-71 274.6 282 56.7
SEGI_21905 Sequoiadendron giganteum HOM05D005744 ORTHO05D007503 1.6e-71 274.2 183 64.5
MCO07G390 Micromonas commoda HOM05D005744 ORTHO05D007503 5.3e-70 269.2 340 42.1
SHI06365 Sapria himalayana HOM05D005744 ORTHO05D007503 2.8e-63 246.9 382 39.5
AagrBONN_evm.TU.Sc2ySwM_344.2997 Anthoceros agrestis HOM05D005744 ORTHO05D007503 5.8e-61 239.2 220 49.5
HanXRQChr10g0289761 Helianthus annuus HOM05D005744 ORTHO05D007503 5.1e-57 226.1 212 58.5
Lsat_1_v5_gn_8_77640 Lactuca sativa HOM05D005744 ORTHO05D007503 1.3e-55 221.5 128 82.8
Cre16.g666000 Chlamydomonas reinhardtii HOM05D005744 ORTHO05D007503 3.1e-54 216.9 459 31.2
PRCOL_00001155 Prasinoderma coloniale HOM05D005744 ORTHO05D007503 5.5e-51 206.1 420 35.5
RcHm_v2.0_Chr4g0407951 Rosa chinensis HOM05D005744 ORTHO05D007503 2.5e-43 180.6 250 42.0
COL.COLO4_31215 Corchorus olitorius HOM05D005744 ORTHO05D007503 5.1e-41 172.9 128 64.1
GSVIVG01008540001 Vitis vinifera HOM05D005744 ORTHO05D007503 1.5e-37 161.4 118 66.1
QL10p003231 Quercus lobata HOM05D005744 ORTHO05D007503 1.6e-34 151.4 117 60.7
Aa31LG7G10970 Aethionema arabicum HOM05D005744 ORTHO05D007503 4.0e-25 120.2 122 51.6
Lsat_1_v5_gn_8_150141 Lactuca sativa HOM05D005744 ORTHO05D048266 1.5e-24 118.2 107 55.1
CDE12G0192 Ceratophyllum demersum HOM05D005744 ORTHO05D007503 3.7e-23 113.6 146 48.6
RcHm_v2.0_Chr4g0407901 Rosa chinensis HOM05D005744 ORTHO05D007503 1.3e-20 105.1 256 34.0
TAR629G1577 Trochodendron aralioides HOM05D005744 ORTHO05D007503 2.3e-12 77.8 59 57.6
SEGI_17145 Sequoiadendron giganteum HOM05D005744 ORTHO05D007503 5.2e-09 66.6 65 58.5
HanXRQChr10g0289791 Helianthus annuus HOM05D005744 ORTHO05D048266 1.5e-08 65.1 48 64.6


User provided reference genes

Program Settings