Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA232G3528 Erigeron canadensis HOM05D001960 ORTHO05D007725 3.2e-220 768.1 374 100.0
HanXRQChr09g0265611 Helianthus annuus HOM05D001960 ORTHO05D007725 1.2e-203 713.0 374 91.4
Lsat_1_v5_gn_4_179920 Lactuca sativa HOM05D001960 ORTHO05D007725 1.3e-200 703.0 374 91.2
ECA232G0063 Erigeron canadensis HOM05D001960 ORTHO05D007725 6.9e-199 697.2 374 92.5
CSS0006137 Camellia sinensis var. sinensis HOM05D001960 ORTHO05D007725 1.1e-183 646.7 374 81.6
CSS0036057 Camellia sinensis var. sinensis HOM05D001960 ORTHO05D007725 1.1e-183 646.7 374 81.6
TAR371G1229 Trochodendron aralioides HOM05D001960 ORTHO05D007725 1.8e-183 646.0 378 79.9
Atru.chr8.1915 Acer truncatum HOM05D001960 ORTHO05D007725 3.1e-183 645.2 378 80.4
THA.LOC104823928 Tarenaya hassleriana HOM05D001960 ORTHO05D007725 3.1e-183 645.2 373 81.0
Gohir.D04G050500 Gossypium hirsutum HOM05D001960 ORTHO05D007725 2.0e-182 642.5 378 79.9
QL02p080348 Quercus lobata HOM05D001960 ORTHO05D007725 2.6e-182 642.1 377 79.6
DCAR_006720 Daucus carota HOM05D001960 ORTHO05D007725 3.4e-182 641.7 377 80.1
Gorai.012G056000 Gossypium raimondii HOM05D001960 ORTHO05D007725 3.4e-182 641.7 378 79.9
MELO3C021973.2 Cucumis melo HOM05D001960 ORTHO05D007725 4.5e-182 641.3 376 79.3
CsaV3_5G037870 Cucumis sativus L. HOM05D001960 ORTHO05D007725 4.5e-182 641.3 376 79.3
Cfa007507 Carpinus fangiana HOM05D001960 ORTHO05D007725 1.7e-181 639.4 378 79.6
CANSAT64G2224 Cannabis sativa HOM05D001960 ORTHO05D007725 4.9e-181 637.9 377 80.9
Manes.17G020800 Manihot esculenta HOM05D001960 ORTHO05D007725 1.4e-180 636.3 379 80.7
Thhalv10004119m.g Eutrema salsugineum HOM05D001960 ORTHO05D007725 1.9e-180 636.0 374 77.8
Gohir.A05G364200 Gossypium hirsutum HOM05D001960 ORTHO05D007725 1.9e-180 636.0 378 79.6
Sabra17G0069200 Salix brachista HOM05D001960 ORTHO05D007725 3.2e-180 635.2 378 79.1
BcaC06g30901 Brassica carinata HOM05D001960 ORTHO05D007725 4.2e-180 634.8 375 78.1
CiPaw.03G030400 Carya illinoinensis HOM05D001960 ORTHO05D007725 5.5e-180 634.4 376 80.1
Thecc.04G074100 Theobroma cacao HOM05D001960 ORTHO05D007725 5.5e-180 634.4 376 79.8
Cc01_g00810 Coffea canephora HOM05D001960 ORTHO05D007725 7.1e-180 634.0 374 78.9
Aa31LG2G4510 Aethionema arabicum HOM05D001960 ORTHO05D007725 9.3e-180 633.6 379 77.6
Psat7g177520 Pisum sativum HOM05D001960 ORTHO05D007725 9.3e-180 633.6 377 79.6
BcaC06g33634 Brassica carinata HOM05D001960 ORTHO05D007725 1.6e-179 632.9 374 77.5
Migut.K01335 Erythranthe guttata HOM05D001960 ORTHO05D007725 1.6e-179 632.9 376 79.5
Actinidia06068 Actinidia chinensis HOM05D001960 ORTHO05D007725 2.1e-179 632.5 378 79.4
Lj7A401T79 Lonicera japonica HOM05D001960 ORTHO05D007725 2.1e-179 632.5 413 74.8
Potri.017G077000 Populus trichocarpa HOM05D001960 ORTHO05D007725 2.7e-179 632.1 378 78.8
AT3G28700 Arabidopsis thaliana HOM05D001960 ORTHO05D007725 3.5e-179 631.7 374 77.3
Carub.0005s0723 Capsella rubella HOM05D001960 ORTHO05D007725 3.5e-179 631.7 374 77.3
Nn3g17123 Nelumbo nucifera HOM05D001960 ORTHO05D007725 3.5e-179 631.7 378 77.8
AL5G18340 Arabidopsis lyrata HOM05D001960 ORTHO05D007725 7.9e-179 630.6 374 77.8
TPR.G17186 Trifolium pratense HOM05D001960 ORTHO05D007725 7.9e-179 630.6 378 79.1
Sp2g17340 Schrenkiella parvula HOM05D001960 ORTHO05D007725 1.0e-178 630.2 374 76.7
C07p37650 Brassica napus HOM05D001960 ORTHO05D004348 1.3e-178 629.8 373 77.2
BolC7t44281H Brassica oleracea HOM05D001960 ORTHO05D007725 1.3e-178 629.8 373 77.2
CARHR286600 Cardamine hirsuta HOM05D001960 ORTHO05D007725 1.8e-178 629.4 374 77.0
Hma1.2p1_1232F.1_g268880 Hydrangea macrophylla HOM05D001960 ORTHO05D007725 1.8e-178 629.4 377 80.1
Ciclev10011611m.g Citrus clementina HOM05D001960 ORTHO05D007725 3.0e-178 628.6 378 78.3
MSTRG.15488 Avicennia marina HOM05D001960 ORTHO05D007725 5.1e-178 627.9 378 79.6
Nitab4.5_0002265g0270 Nicotiana tabacum HOM05D001960 ORTHO05D007725 6.7e-178 627.5 378 79.1
A06p40400 Brassica napus HOM05D001960 ORTHO05D004348 8.7e-178 627.1 373 77.5
BraA06t26958Z Brassica rapa HOM05D001960 ORTHO05D004348 8.7e-178 627.1 373 77.5
Glyma.11G099200 Glycine max HOM05D001960 ORTHO05D007725 1.1e-177 626.7 378 79.4
TWI34G1416 Tripterygium wilfordii HOM05D001960 ORTHO05D007725 1.1e-177 626.7 378 77.8
GSVIVG01032604001 Vitis vinifera HOM05D001960 ORTHO05D007725 1.5e-177 626.3 378 78.8
arahy.Tifrunner.gnm1.ann1.57V2RC Arachis hypogaea HOM05D001960 ORTHO05D007725 1.9e-177 625.9 378 78.3
arahy.Tifrunner.gnm1.ann1.9ZMQ3R Arachis hypogaea HOM05D001960 ORTHO05D007725 2.5e-177 625.5 378 78.3
Lj3g0011182 Lotus japonicus HOM05D001960 ORTHO05D007725 2.5e-177 625.5 379 78.6
Oeu060916.1 Olea europaea HOM05D001960 ORTHO05D007725 2.5e-177 625.5 378 79.1
Nitab4.5_0000564g0320 Nicotiana tabacum HOM05D001960 ORTHO05D007725 3.3e-177 625.2 378 78.8
PGSC0003DMG400001411 Solanum tuberosum HOM05D001960 ORTHO05D007725 4.3e-177 624.8 378 78.6
FvH4_6g49351 Fragaria vesca HOM05D001960 ORTHO05D007725 5.7e-177 624.4 378 78.3
Phvul.011G027550 Phaseolus vulgaris HOM05D001960 ORTHO05D007725 7.4e-177 624.0 378 78.6
SGA_v2.0_scaffold30G12523 Striga asiatica HOM05D001960 ORTHO05D007725 7.4e-177 624.0 378 78.3
Sopen02g032390 Solanum pennellii HOM05D001960 ORTHO05D007725 1.3e-176 623.2 378 78.3
Haze_14586 Corylus avellana HOM05D001960 ORTHO05D007725 1.6e-176 622.9 414 72.5
ClCG09G018410 Citrullus lanatus HOM05D001960 ORTHO05D007725 2.2e-176 622.5 403 73.4
FAN05G4054 Fragaria x ananassa HOM05D001960 ORTHO05D007725 2.2e-176 622.5 378 78.0
PGR083G0481 Punica granatum HOM05D001960 ORTHO05D007725 3.7e-176 621.7 381 78.0
RcHm_v2.0_Chr2g0169211 Rosa chinensis HOM05D001960 ORTHO05D007725 4.8e-176 621.3 376 77.9
CAN.G206.108 Capsicum annuum HOM05D001960 ORTHO05D007725 6.3e-176 620.9 378 78.6
Solyc02g087640.3 Solanum lycopersicum HOM05D001960 ORTHO05D007725 6.3e-176 620.9 378 78.0
SalBow1G8169 Salvia bowleyana HOM05D001960 ORTHO05D007725 5.3e-175 617.8 377 77.2
Eucgr.J02136 Eucalyptus grandis HOM05D001960 ORTHO05D007725 1.2e-174 616.7 378 76.2
RhsimUnG0055000 Rhododendron simsii HOM05D001960 ORTHO05D007725 1.2e-174 616.7 379 78.4
Prupe.3G272300 Prunus persica HOM05D001960 ORTHO05D007725 1.5e-174 616.3 375 78.9
MD09G1045900 Malus domestica HOM05D001960 ORTHO05D007725 2.6e-174 615.5 373 78.6
MD17G1046800 Malus domestica HOM05D001960 ORTHO05D007725 3.4e-174 615.1 373 78.0
Medtr4g075200 Medicago truncatula HOM05D001960 ORTHO05D007725 3.4e-174 615.1 378 77.0
Sed0013706 Sechium edule HOM05D001960 ORTHO05D007725 3.4e-174 615.1 377 76.9
VMungo1127G2029 Vigna mungo HOM05D001960 ORTHO05D007725 5.9e-174 614.4 378 76.5
PSO832G0234 Papaver somniferum HOM05D001960 ORTHO05D007725 7.6e-174 614.0 374 77.3
Aqoxy3G03264 Aquilegia oxysepala HOM05D001960 ORTHO05D007725 1.3e-173 613.2 376 76.6
Ca_19010_v3 Cicer arietinum L. HOM05D001960 ORTHO05D007725 1.3e-173 613.2 374 78.1
FAN14G4702 Fragaria x ananassa HOM05D001960 ORTHO05D007725 8.5e-173 610.5 369 78.0
Lalb_Chr19g0139461 Lupinus albus HOM05D001960 ORTHO05D007725 1.4e-172 609.8 380 75.8
Ca_20945_v3 Cicer arietinum L. HOM05D001960 ORTHO05D007725 3.2e-172 608.6 378 77.5
Sed0024340 Sechium edule HOM05D001960 ORTHO05D007725 3.2e-172 608.6 376 75.0
FAN02G2179 Fragaria x ananassa HOM05D001960 ORTHO05D007725 4.2e-172 608.2 408 72.3
Os01g0588800 Oryza sativa ssp. japonica HOM05D001960 ORTHO05D007725 1.2e-171 606.7 376 75.8
MBI15_g37231_MAGBIO Magnolia biondii HOM05D001960 ORTHO05D007725 1.4e-170 603.2 360 79.4
Oeu033340.1 Olea europaea HOM05D001960 ORTHO05D007725 6.7e-170 600.9 359 79.1
AUR62031644 Chenopodium quinoa HOM05D001960 ORTHO05D007725 1.1e-169 600.1 379 73.9
Hund13245 Selenicereus undatus HOM05D001960 ORTHO05D007725 4.3e-169 598.2 380 75.5
Sc10g0003830 Simmondsia chinensis HOM05D001960 ORTHO05D007725 2.2e-168 595.9 373 75.1
AUR62038879 Chenopodium quinoa HOM05D001960 ORTHO05D007725 3.1e-167 592.0 392 71.7
Ah.12g065370 Amaranthus hybridus HOM05D001960 ORTHO05D007725 7.7e-166 587.4 393 71.8
EL10Ac2g03435 Beta vulgaris HOM05D001960 ORTHO05D007725 7.7e-166 587.4 379 74.4
ATR1120G150 Amborella trichopoda HOM05D001960 ORTHO05D007725 1.3e-165 586.6 381 73.8
Dinv33716 Davidia involucrata HOM05D001960 ORTHO05D007725 2.1e-163 579.3 340 80.6
HPP92_022934 Vanilla planifolia HOM05D001960 ORTHO05D007725 1.8e-159 566.2 386 69.4
HPP92_022922 Vanilla planifolia HOM05D001960 ORTHO05D007725 4.2e-156 555.1 378 70.4
Peaxi162Scf00129g00533 Petunia axillaris HOM05D001960 ORTHO05D007725 2.1e-155 552.7 378 71.2
Zm00001eb357440 Zea mays HOM05D001960 ORTHO05D007725 1.0e-154 550.4 376 69.7
C09p03940 Brassica napus HOM05D001960 ORTHO05D007725 4.8e-152 541.6 373 67.8
BcaC04g23865 Brassica carinata HOM05D001960 ORTHO05D004348 7.7e-150 534.3 353 71.1
vmacro05739 Vaccinium macrocarpon HOM05D001960 ORTHO05D007725 2.5e-148 529.3 379 70.7
CDE05G2812 Ceratophyllum demersum HOM05D001960 ORTHO05D007725 9.4e-148 527.3 380 68.9
SEGI_03019 Sequoiadendron giganteum HOM05D001960 ORTHO05D007725 4.7e-147 525.0 376 65.7
COL.COLO4_25201 Corchorus olitorius HOM05D001960 ORTHO05D007725 1.4e-146 523.5 378 69.3
BolC9t53325H Brassica oleracea HOM05D001960 ORTHO05D007725 1.8e-146 523.1 362 68.0
PSO591G0496 Papaver somniferum HOM05D001960 ORTHO05D007725 8.8e-146 520.8 377 67.9
unitig_747.g21836 Utricularia gibba HOM05D001960 ORTHO05D007725 1.2e-142 510.4 378 65.6
Mapoly0027s0012 Marchantia polymorpha HOM05D001960 ORTHO05D007725 4.5e-142 508.4 379 66.0
Pp3c8_16780 Physcomitrium patens HOM05D001960 ORTHO05D007725 1.3e-141 506.9 392 61.7
Dinv34989 Davidia involucrata HOM05D001960 ORTHO05D007725 1.2e-137 493.8 326 73.9
AagrBONN_evm.TU.Sc2ySwM_368.2217 Anthoceros agrestis HOM05D001960 ORTHO05D007725 2.2e-128 463.0 405 56.8
Hma1.2p1_1232F.1_g268890 Hydrangea macrophylla HOM05D001960 ORTHO05D007725 5.6e-124 448.4 255 82.7
C04p40510 Brassica napus HOM05D001960 ORTHO05D007725 1.2e-121 440.7 293 70.6
BolC4t25631H Brassica oleracea HOM05D001960 ORTHO05D007725 1.2e-121 440.7 293 70.6
SMO200G0063 Selaginella moellendorffii HOM05D001960 ORTHO05D007725 8.9e-114 414.5 391 55.2
C05p44890 Brassica napus HOM05D001960 ORTHO05D007725 3.5e-110 402.5 290 66.2
Ca_19017_v3 Cicer arietinum L. HOM05D000077 ORTHO05D002511 9.5e-108 394.4 344 59.9
C08p31240 Brassica napus HOM05D001960 ORTHO05D007725 3.1e-106 389.4 281 66.2
BolC8t50105H Brassica oleracea HOM05D001960 ORTHO05D007725 2.6e-105 386.3 266 69.9
BcaC02g09250 Brassica carinata HOM05D001960 ORTHO05D007725 6.4e-104 381.7 260 69.6
C08p24890 Brassica napus HOM05D001960 ORTHO05D007725 2.4e-103 379.8 290 64.8
MCO09G443 Micromonas commoda HOM05D001960 ORTHO05D007725 1.8e-90 337.0 383 46.0
HPP92_022944 Vanilla planifolia HOM05D001960 ORTHO05D007725 6.6e-85 318.5 208 72.6
CBR_g40650 Chara braunii HOM05D001960 ORTHO05D007725 1.4e-66 257.7 312 44.2
SHI22231 Sapria himalayana HOM05D001960 ORTHO05D007725 2.4e-66 256.9 249 54.6
Cre02.g096400 Chlamydomonas reinhardtii HOM05D001960 ORTHO05D007725 9.3e-63 245.0 571 32.0
Migut.K01334 Erythranthe guttata HOM05D001960 ORTHO05D007725 2.9e-48 196.8 116 80.2
Dinv34987 Davidia involucrata HOM05D001960 ORTHO05D007725 4.2e-47 193.0 110 81.8
Cfa026330 Carpinus fangiana HOM05D001960 ORTHO05D007725 3.0e-45 186.8 458 31.9
Actinidia23575 Actinidia chinensis HOM05D001960 ORTHO05D007725 4.1e-34 149.8 112 65.2
AUR62031616 Chenopodium quinoa HOM05D000372 ORTHO05D002769 5.2e-29 132.9 82 70.7
A05p31150 Brassica napus HOM05D001960 ORTHO05D033473 1.9e-23 114.4 69 78.3
CDE05G0334 Ceratophyllum demersum HOM05D000115 ORTHO05D000645 1.2e-20 105.1 60 75.0
C07p16020 Brassica napus HOM05D001960 ORTHO05D014930 1.6e-17 94.7 92 50.0
A05p31140 Brassica napus HOM05D001960 ORTHO05D042754 1.0e-16 92.0 91 50.5
C04p14730 Brassica napus HOM05D001960 ORTHO05D014930 1.0e-16 92.0 67 59.7
BcaC02g11495 Brassica carinata HOM05D001960 ORTHO05D014930 1.3e-16 91.7 66 60.6
A01p26160 Brassica napus HOM05D001960 ORTHO05D014930 1.3e-16 91.7 67 59.7
BolC3t20150H Brassica oleracea HOM05D001960 ORTHO05D014930 1.3e-16 91.7 67 59.7
BraA02t06070Z Brassica rapa HOM05D001960 ORTHO05D014930 1.3e-16 91.7 67 59.7
C07p16060 Brassica napus HOM05D001960 ORTHO05D021151 3.8e-16 90.1 65 60.0
BolC5t33816H Brassica oleracea HOM05D001960 ORTHO05D014930 8.6e-16 89.0 67 56.7
BcaC05g28941 Brassica carinata HOM05D001960 ORTHO05D014930 1.1e-15 88.6 66 57.6
BraA05t21956Z Brassica rapa HOM05D001960 ORTHO05D042754 1.1e-15 88.6 63 61.9
HPP92_003669 Vanilla planifolia HOM05D001960 ORTHO05D007725 1.2e-14 85.1 69 63.8
Hma1.2p1_1232F.1_g268870 Hydrangea macrophylla HOM05D001960 ORTHO05D014729 5.7e-12 76.3 38 89.5
Medtr5g075800 Medicago truncatula HOM05D001960 ORTHO05D258834 2.2e-11 74.3 85 51.8
HPP92_017638 Vanilla planifolia HOM05D003031 ORTHO05D003371 2.7e-09 67.4 39 76.9
Dinv06509 Davidia involucrata HOM05D001960 ORTHO05D014729 2.5e-07 60.8 30 90.0
Dinv25076 Davidia involucrata HOM05D001960 ORTHO05D033473 3.3e-07 60.5 41 68.3


User provided reference genes

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