Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA232G3506 Erigeron canadensis HOM05D003980 ORTHO05D005301 2.3e-48 195.3 100 100.0
ECA232G4466 Erigeron canadensis HOM05D003980 ORTHO05D005301 3.8e-27 124.8 84 77.4
Lsat_1_v5_gn_4_84700 Lactuca sativa HOM05D003980 ORTHO05D005301 2.4e-26 122.1 85 77.6
HanXRQChr09g0273931 Helianthus annuus HOM05D003980 ORTHO05D005301 9.3e-26 120.2 85 75.3
HanXRQChr16g0498871 Helianthus annuus HOM05D003980 ORTHO05D005301 4.6e-25 117.9 85 74.1
GSVIVG01008633001 Vitis vinifera HOM05D003980 ORTHO05D005301 1.5e-23 112.8 85 70.6
SalBow7G4845 Salvia bowleyana HOM05D003980 ORTHO05D005301 2.5e-23 112.1 85 69.4
Ciclev10030650m.g Citrus clementina HOM05D003980 ORTHO05D005301 5.6e-23 110.9 85 68.2
CSS0000982 Camellia sinensis var. sinensis HOM05D003980 ORTHO05D005301 9.6e-23 110.2 82 73.2
Cc04_g05920 Coffea canephora HOM05D003980 ORTHO05D005301 1.6e-22 109.4 85 68.2
Dinv13736 Davidia involucrata HOM05D003980 ORTHO05D005301 2.8e-22 108.6 84 69.0
CiPaw.11G001400 Carya illinoinensis HOM05D003980 ORTHO05D005301 8.1e-22 107.1 85 67.1
PGR083G0225 Punica granatum HOM05D003980 ORTHO05D005301 8.1e-22 107.1 85 65.9
CSS0005251 Camellia sinensis var. sinensis HOM05D003980 ORTHO05D005301 1.1e-21 106.7 85 67.1
Cfa018720 Carpinus fangiana HOM05D003980 ORTHO05D005301 1.1e-21 106.7 85 67.1
DCAR_025658 Daucus carota HOM05D003980 ORTHO05D005301 1.1e-21 106.7 80 71.2
Dinv23210 Davidia involucrata HOM05D003980 ORTHO05D005301 1.1e-21 106.7 84 70.2
CSS0048257 Camellia sinensis var. sinensis HOM05D003980 ORTHO05D005301 1.8e-21 105.9 85 67.1
Cpa.g.sc4.108 Carica papaya HOM05D003980 ORTHO05D005301 1.8e-21 105.9 85 65.9
Rhsim08G0195900 Rhododendron simsii HOM05D003980 ORTHO05D005301 2.4e-21 105.5 85 65.9
Haze_07113 Corylus avellana HOM05D003980 ORTHO05D005301 3.1e-21 105.1 85 65.9
Migut.I00610 Erythranthe guttata HOM05D003980 ORTHO05D005301 3.1e-21 105.1 85 64.7
Eucgr.B00073 Eucalyptus grandis HOM05D003980 ORTHO05D005301 5.3e-21 104.4 85 63.5
MSTRG.11233 Avicennia marina HOM05D003980 ORTHO05D005301 6.9e-21 104.0 85 63.5
Nitab4.5_0000663g0190 Nicotiana tabacum HOM05D003980 ORTHO05D005301 6.9e-21 104.0 85 64.7
Nitab4.5_0002450g0020 Nicotiana tabacum HOM05D003980 ORTHO05D005301 6.9e-21 104.0 85 64.7
Solyc03g118350.4 Solanum lycopersicum HOM05D003980 ORTHO05D005301 6.9e-21 104.0 85 63.5
Sopen03g037250 Solanum pennellii HOM05D003980 ORTHO05D005301 6.9e-21 104.0 85 63.5
TAR371G0735 Trochodendron aralioides HOM05D003980 ORTHO05D005301 6.9e-21 104.0 85 64.7
Lalb_Chr23g0272921 Lupinus albus HOM05D003980 ORTHO05D005301 9.0e-21 103.6 86 60.5
CAN.G843.24 Capsicum annuum HOM05D003980 ORTHO05D005301 1.2e-20 103.2 85 63.5
Lalb_Chr12g0202411 Lupinus albus HOM05D003980 ORTHO05D005301 1.2e-20 103.2 85 62.4
Atru.chr6.1901 Acer truncatum HOM05D003980 ORTHO05D005301 1.5e-20 102.8 85 63.5
PGSC0003DMG401014249 Solanum tuberosum HOM05D003980 ORTHO05D005301 1.5e-20 102.8 85 63.5
PGSC0003DMG402014249 Solanum tuberosum HOM05D003980 ORTHO05D005301 1.5e-20 102.8 85 63.5
vmacro19166 Vaccinium macrocarpon HOM05D003980 ORTHO05D005301 1.5e-20 102.8 85 63.5
FAN04G0599 Fragaria x ananassa HOM05D003980 ORTHO05D005301 2.0e-20 102.4 85 63.5
MBI19_g26308_MAGBIO Magnolia biondii HOM05D003980 ORTHO05D005301 4.5e-20 101.3 85 63.5
RcHm_v2.0_Chr7g0188941 Rosa chinensis HOM05D003980 ORTHO05D005301 4.5e-20 101.3 85 63.5
arahy.Tifrunner.gnm1.ann1.JJXJ29 Arachis hypogaea HOM05D003980 ORTHO05D005301 5.8e-20 100.9 85 61.2
arahy.Tifrunner.gnm1.ann1.US1BEE Arachis hypogaea HOM05D003980 ORTHO05D005301 5.8e-20 100.9 85 61.2
MD06G1132400 Malus domestica HOM05D003980 ORTHO05D005301 5.8e-20 100.9 80 67.5
Medtr8g100000 Medicago truncatula HOM05D003980 ORTHO05D005301 5.8e-20 100.9 85 61.2
Manes.06G125700 Manihot esculenta HOM05D003980 ORTHO05D005301 7.6e-20 100.5 85 61.2
Peaxi162Scf00314g00535 Petunia axillaris HOM05D003980 ORTHO05D005301 7.6e-20 100.5 85 62.4
Hund10056 Selenicereus undatus HOM05D003980 ORTHO05D005301 7.6e-20 100.5 85 63.5
FvH4_5g09220 Fragaria vesca HOM05D003980 ORTHO05D005301 9.9e-20 100.1 85 62.4
FAN08G3345 Fragaria x ananassa HOM05D003980 ORTHO05D005301 9.9e-20 100.1 85 62.4
FAN13G1995 Fragaria x ananassa HOM05D003980 ORTHO05D005301 9.9e-20 100.1 85 62.4
FAN18G3345 Fragaria x ananassa HOM05D003980 ORTHO05D005301 9.9e-20 100.1 85 62.4
TPR.G12812 Trifolium pratense HOM05D003980 ORTHO05D005301 9.9e-20 100.1 85 62.4
Gohir.A09G248100 Gossypium hirsutum HOM05D003980 ORTHO05D005301 1.3e-19 99.8 85 62.4
Gohir.D09G248900 Gossypium hirsutum HOM05D003980 ORTHO05D005301 1.3e-19 99.8 85 62.4
Gorai.006G273300 Gossypium raimondii HOM05D003980 ORTHO05D005301 1.3e-19 99.8 85 62.4
COL.COLO4_37237 Corchorus olitorius HOM05D003980 ORTHO05D005301 1.7e-19 99.4 85 62.4
Prupe.5G143400 Prunus persica HOM05D003980 ORTHO05D005301 1.7e-19 99.4 80 66.2
TWI39G0366 Tripterygium wilfordii HOM05D003980 ORTHO05D005301 1.7e-19 99.4 85 62.4
CsaV3_1G000110 Cucumis sativus L. HOM05D003980 ORTHO05D005301 2.2e-19 99.0 85 62.4
MELO3C026163.2 Cucumis melo HOM05D003980 ORTHO05D005301 3.8e-19 98.2 85 61.2
Glyma.08G008600 Glycine max HOM05D003980 ORTHO05D005301 3.8e-19 98.2 80 63.8
Nn4g22168 Nelumbo nucifera HOM05D003980 ORTHO05D005301 3.8e-19 98.2 85 61.2
Thecc.03G138500 Theobroma cacao HOM05D003980 ORTHO05D005301 3.8e-19 98.2 85 62.4
QL10p000901 Quercus lobata HOM05D003980 ORTHO05D005301 4.9e-19 97.8 77 67.5
unitig_22.g6271 Utricularia gibba HOM05D003980 ORTHO05D005301 4.9e-19 97.8 85 60.0
Potri.015G105000 Populus trichocarpa HOM05D003980 ORTHO05D005301 1.1e-18 96.7 85 56.5
Sabra15G0125200 Salix brachista HOM05D003980 ORTHO05D005301 1.1e-18 96.7 85 57.6
ClCG06G018320 Citrullus lanatus HOM05D003980 ORTHO05D005301 1.4e-18 96.3 81 63.0
Glyma.05G201200 Glycine max HOM05D003980 ORTHO05D005301 1.4e-18 96.3 85 58.8
CANSAT56G3290 Cannabis sativa HOM05D003980 ORTHO05D005301 2.4e-18 95.5 85 61.2
Aqoxy5G03175 Aquilegia oxysepala HOM05D003980 ORTHO05D005301 3.2e-18 95.1 85 60.0
arahy.Tifrunner.gnm1.ann1.1NY8SK Arachis hypogaea HOM05D003980 ORTHO05D005301 3.2e-18 95.1 86 58.1
Lj9A485G82 Lonicera japonica HOM05D003980 ORTHO05D005301 3.2e-18 95.1 85 62.4
Lj4g0027174 Lotus japonicus HOM05D003980 ORTHO05D005301 3.2e-18 95.1 86 57.0
Lj5A88T63 Lonicera japonica HOM05D003980 ORTHO05D005301 4.2e-18 94.7 85 62.4
Ah.02g114660 Amaranthus hybridus HOM05D003980 ORTHO05D005301 5.4e-18 94.4 85 58.8
Duzib084G0479 Durio zibethinus HOM05D003980 ORTHO05D005301 5.4e-18 94.4 85 60.0
Lalb_Chr13g0297021 Lupinus albus HOM05D003980 ORTHO05D005301 5.4e-18 94.4 87 58.6
Sc04g0000260 Simmondsia chinensis HOM05D003980 ORTHO05D005301 5.4e-18 94.4 84 59.5
Ca_17584_v3 Cicer arietinum L. HOM05D003980 ORTHO05D005301 7.1e-18 94.0 85 56.5
MD14G1148800 Malus domestica HOM05D003980 ORTHO05D005301 7.1e-18 94.0 80 62.5
Psat7g039040 Pisum sativum HOM05D003980 ORTHO05D005301 7.1e-18 94.0 85 57.6
Sed0025035 Sechium edule HOM05D003980 ORTHO05D005301 7.1e-18 94.0 85 58.8
VMungo1309G0598 Vigna mungo HOM05D003980 ORTHO05D005301 7.1e-18 94.0 85 56.5
Lj1g0007025 Lotus japonicus HOM05D003980 ORTHO05D005301 9.3e-18 93.6 85 58.8
Phvul.002G282600 Phaseolus vulgaris HOM05D003980 ORTHO05D005301 1.2e-17 93.2 85 57.6
EL10Ac5g11306 Beta vulgaris HOM05D003980 ORTHO05D005301 3.5e-17 91.7 85 56.5
AUR62034771 Chenopodium quinoa HOM05D003980 ORTHO05D005301 3.5e-17 91.7 80 60.0
Phvul.009G164700 Phaseolus vulgaris HOM05D003980 ORTHO05D005301 4.6e-17 91.3 85 56.5
DCAR_021407 Daucus carota HOM05D003980 ORTHO05D005301 6.0e-17 90.9 85 56.5
Nn3g16303 Nelumbo nucifera HOM05D003980 ORTHO05D005301 6.0e-17 90.9 85 57.6
TPR.G21586 Trifolium pratense HOM05D003980 ORTHO05D005301 7.9e-17 90.5 85 56.5
AUR62009517 Chenopodium quinoa HOM05D003980 ORTHO05D005301 1.0e-16 90.1 80 58.8
TWI14G0519 Tripterygium wilfordii HOM05D003980 ORTHO05D005301 1.0e-16 90.1 85 60.0
Sabra12G0078100 Salix brachista HOM05D003980 ORTHO05D005301 1.3e-16 89.7 85 54.1
Potri.012G105800 Populus trichocarpa HOM05D003980 ORTHO05D005301 1.8e-16 89.4 85 54.1
Hund02497 Selenicereus undatus HOM05D003980 ORTHO05D005301 1.8e-16 89.4 85 55.3
VMungo0251G0815 Vigna mungo HOM05D003980 ORTHO05D005301 1.8e-16 89.4 85 56.5
Psat5g054480 Pisum sativum HOM05D003980 ORTHO05D005301 3.9e-16 88.2 85 52.9
CARHR189830 Cardamine hirsuta HOM05D003980 ORTHO05D005301 1.9e-15 85.9 89 55.1
DCAR_031844 Daucus carota HOM05D003980 ORTHO05D005301 1.9e-15 85.9 85 54.1
Medtr3g498735 Medicago truncatula HOM05D003980 ORTHO05D005301 1.9e-15 85.9 85 54.1
Thhalv10003616m.g Eutrema salsugineum HOM05D003980 ORTHO05D005301 2.5e-15 85.5 88 55.7
BcaNung01844 Brassica carinata HOM05D003980 ORTHO05D005301 5.6e-15 84.3 88 56.8
C07p43870 Brassica napus HOM05D003980 ORTHO05D005301 5.6e-15 84.3 88 56.8
BolC7t44915H Brassica oleracea HOM05D003980 ORTHO05D005301 5.6e-15 84.3 88 56.8
Glyma.04G200300 Glycine max HOM05D003980 ORTHO05D005301 5.6e-15 84.3 85 56.5
AL6G34990 Arabidopsis lyrata HOM05D003980 ORTHO05D005301 7.4e-15 84.0 88 56.8
A06p34620 Brassica napus HOM05D003980 ORTHO05D005301 7.4e-15 84.0 88 56.8
BraA06t26390Z Brassica rapa HOM05D003980 ORTHO05D005301 7.4e-15 84.0 88 56.8
Carub.0006s2147 Capsella rubella HOM05D003980 ORTHO05D005301 7.4e-15 84.0 88 54.5
Aa31LG11G3070 Aethionema arabicum HOM05D003980 ORTHO05D005301 1.3e-14 83.2 88 56.8
AT5G23720 Arabidopsis thaliana HOM05D003980 ORTHO05D005301 1.6e-14 82.8 88 54.5
Duzib205G0834 Durio zibethinus HOM05D003980 ORTHO05D005301 1.6e-14 82.8 86 54.7
Sp2g23510 Schrenkiella parvula HOM05D003980 ORTHO05D005301 2.1e-14 82.4 88 53.4
THA.LOC104821537 Tarenaya hassleriana HOM05D003980 ORTHO05D005301 2.8e-14 82.0 88 55.7
Ca_10885_v3 Cicer arietinum L. HOM05D003980 ORTHO05D005301 3.7e-14 81.6 85 50.6
Ca_16085_v3 Cicer arietinum L. HOM05D003980 ORTHO05D005301 6.2e-14 80.9 85 49.4
CDE01G0794 Ceratophyllum demersum HOM05D003980 ORTHO05D005301 8.1e-14 80.5 77 53.2
Psat5g054520 Pisum sativum HOM05D003980 ORTHO05D005301 2.4e-13 79.0 83 48.2
CDE05G3070 Ceratophyllum demersum HOM05D003980 ORTHO05D005301 3.1e-13 78.6 79 51.9
Zm00001eb340730 Zea mays HOM05D003980 ORTHO05D005301 5.3e-13 77.8 82 51.2
Os01g0347000 Oryza sativa ssp. japonica HOM05D003980 ORTHO05D005301 6.9e-13 77.4 86 48.8
PSO832G3889 Papaver somniferum HOM05D003980 ORTHO05D005301 1.5e-12 76.3 79 55.7
ATR0693G246 Amborella trichopoda HOM05D003980 ORTHO05D005301 3.4e-12 75.1 85 51.8
PSO591G0475 Papaver somniferum HOM05D003980 ORTHO05D005301 3.4e-12 75.1 79 54.4
CDE12G0830 Ceratophyllum demersum HOM05D003980 ORTHO05D005301 2.9e-11 72.0 68 54.4
SEGI_36335 Sequoiadendron giganteum HOM05D003980 ORTHO05D005301 5.5e-10 67.8 83 45.8
Os01g0311500 Oryza sativa ssp. japonica HOM05D003980 ORTHO05D005301 1.6e-09 66.2 89 46.1
HPP92_006911 Vanilla planifolia HOM05D003980 ORTHO05D005301 1.0e-08 63.5 70 54.3
Zm00001eb130450 Zea mays HOM05D003980 ORTHO05D005301 1.0e-08 63.5 63 54.0
Mapoly0024s0055 Marchantia polymorpha HOM05D003980 ORTHO05D005301 5.7e-07 57.8 79 43.0
SHI14124 Sapria himalayana HOM05D003980 ORTHO05D005301 2.1e-06 55.8 57 52.6


User provided reference genes

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