Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA232G3428 Erigeron canadensis HOM05D005923 ORTHO05D007376 0.0e+00 1385.2 681 100.0
Lsat_1_v5_gn_0_14641 Lactuca sativa HOM05D005923 ORTHO05D007376 1.7e-296 1022.3 664 73.2
HanXRQChr10g0283011 Helianthus annuus HOM05D005923 ORTHO05D007376 2.2e-283 978.8 664 72.6
CSS0002064 Camellia sinensis var. sinensis HOM05D005923 ORTHO05D007376 2.2e-235 819.3 678 60.5
Cfa006234 Carpinus fangiana HOM05D005923 ORTHO05D007376 1.6e-233 813.1 685 59.3
Haze_04596 Corylus avellana HOM05D005923 ORTHO05D007376 1.7e-232 809.7 686 59.2
CiPaw.07G083600 Carya illinoinensis HOM05D005923 ORTHO05D007376 2.3e-232 809.3 678 58.7
TWI18G0568 Tripterygium wilfordii HOM05D005923 ORTHO05D007376 1.4e-229 800.0 679 58.9
TAR365G1048 Trochodendron aralioides HOM05D005923 ORTHO05D007376 1.4e-229 800.0 678 59.4
Rhsim05G0165000 Rhododendron simsii HOM05D005923 ORTHO05D007376 1.8e-229 799.7 683 58.3
Actinidia03247 Actinidia chinensis HOM05D005923 ORTHO05D007376 3.1e-229 798.9 673 59.6
Nitab4.5_0001003g0070 Nicotiana tabacum HOM05D005923 ORTHO05D007376 3.1e-229 798.9 671 58.4
Potri.010G180800 Populus trichocarpa HOM05D005923 ORTHO05D007376 1.2e-228 797.0 680 56.6
QL10p015972 Quercus lobata HOM05D005923 ORTHO05D007376 9.8e-228 793.9 685 57.5
COL.COLO4_36605 Corchorus olitorius HOM05D005923 ORTHO05D007376 6.4e-227 791.2 678 58.3
Potri.008G077000 Populus trichocarpa HOM05D005923 ORTHO05D007376 1.4e-226 790.0 682 56.0
RcHm_v2.0_Chr3g0447491 Rosa chinensis HOM05D005923 ORTHO05D007376 2.4e-226 789.3 680 57.1
MSTRG.27409 Avicennia marina HOM05D005923 ORTHO05D007376 3.5e-225 785.4 672 57.4
Sopen11g004360 Solanum pennellii HOM05D005923 ORTHO05D007376 3.5e-225 785.4 667 57.4
Duzib128G1624 Durio zibethinus HOM05D005923 ORTHO05D007376 4.6e-225 785.0 677 57.5
Atru.chr12.1669 Acer truncatum HOM05D005923 ORTHO05D007376 7.8e-225 784.3 677 58.8
Peaxi162Scf00296g01112 Petunia axillaris HOM05D005923 ORTHO05D007376 1.0e-224 783.9 671 57.5
CAN.G321.22 Capsicum annuum HOM05D005923 ORTHO05D007376 2.3e-224 782.7 674 57.1
TPR.G31231 Trifolium pratense HOM05D005923 ORTHO05D007376 1.5e-223 780.0 676 57.0
Manes.12G002100 Manihot esculenta HOM05D005923 ORTHO05D007376 1.9e-223 779.6 680 56.2
GSVIVG01003759001 Vitis vinifera HOM05D005923 ORTHO05D007376 6.2e-222 774.6 673 59.1
Dinv21358 Davidia involucrata HOM05D005923 ORTHO05D007376 1.4e-221 773.5 617 61.6
Ciclev10011172m.g Citrus clementina HOM05D005923 ORTHO05D007376 3.1e-221 772.3 677 57.2
Glyma.18G244700 Glycine max HOM05D005923 ORTHO05D007376 4.0e-221 771.9 680 56.8
Lj1g0007040 Lotus japonicus HOM05D005923 ORTHO05D007376 4.0e-221 771.9 678 56.2
Gohir.D03G071400 Gossypium hirsutum HOM05D005923 ORTHO05D007376 5.2e-221 771.5 680 58.2
Gorai.003G088600 Gossypium raimondii HOM05D005923 ORTHO05D007376 1.2e-220 770.4 679 57.4
Medtr7g080490 Medicago truncatula HOM05D005923 ORTHO05D007376 1.5e-220 770.0 679 57.0
SalBow1G7804 Salvia bowleyana HOM05D005923 ORTHO05D007376 4.4e-220 768.5 671 56.9
Sabra08G0057400 Salix brachista HOM05D005923 ORTHO05D007376 1.3e-219 766.9 682 55.6
Phvul.008G051900 Phaseolus vulgaris HOM05D005923 ORTHO05D007376 2.4e-218 762.7 677 55.8
FvH4_6g00140 Fragaria vesca HOM05D005923 ORTHO05D007376 1.6e-217 760.0 684 55.1
Glyma.09G248100 Glycine max HOM05D005923 ORTHO05D007376 2.7e-217 759.2 675 55.9
arahy.Tifrunner.gnm1.ann1.VQ08NH Arachis hypogaea HOM05D005923 ORTHO05D007376 3.0e-216 755.7 694 54.0
Oeu034703.2 Olea europaea HOM05D005923 ORTHO05D007376 3.0e-216 755.7 735 52.4
Lalb_Chr03g0038141 Lupinus albus HOM05D005923 ORTHO05D007376 3.9e-216 755.4 680 55.7
Sabra10G0138600 Salix brachista HOM05D005923 ORTHO05D007376 3.9e-216 755.4 736 51.6
Migut.F02096 Erythranthe guttata HOM05D005923 ORTHO05D007376 5.1e-216 755.0 668 54.9
MD12G1262500 Malus domestica HOM05D005923 ORTHO05D007376 1.1e-215 753.8 680 55.7
CsaV3_2G010290 Cucumis sativus L. HOM05D005923 ORTHO05D007376 1.9e-215 753.1 682 55.3
VMungo1383G0851 Vigna mungo HOM05D005923 ORTHO05D007376 2.5e-215 752.7 677 55.8
Actinidia06787 Actinidia chinensis HOM05D005923 ORTHO05D007376 3.3e-215 752.3 680 57.1
SGA_v2.0_scaffold62G21491 Striga asiatica HOM05D005923 ORTHO05D007376 5.6e-215 751.5 668 56.4
PGR031G2609 Punica granatum HOM05D005923 ORTHO05D007376 7.3e-215 751.1 678 56.3
Hund21927 Selenicereus undatus HOM05D005923 ORTHO05D007376 7.3e-215 751.1 671 56.2
CANSAT21G0310 Cannabis sativa HOM05D005923 ORTHO05D007376 9.5e-215 750.7 678 54.4
ClCG11G012400 Citrullus lanatus HOM05D005923 ORTHO05D007376 9.5e-215 750.7 678 55.2
Eucgr.B01459 Eucalyptus grandis HOM05D005923 ORTHO05D007376 2.8e-214 749.2 678 55.3
AUR62034530 Chenopodium quinoa HOM05D005923 ORTHO05D007376 6.2e-214 748.0 673 56.0
Sed0021637 Sechium edule HOM05D005923 ORTHO05D007376 6.2e-214 748.0 684 55.1
Cpa.g.sc99.42 Carica papaya HOM05D005923 ORTHO05D007376 8.1e-214 747.7 675 55.1
Ca_08014_v3 Cicer arietinum L. HOM05D005923 ORTHO05D007376 1.4e-213 746.9 676 55.8
AUR62014468 Chenopodium quinoa HOM05D005923 ORTHO05D007376 3.1e-213 745.7 673 55.7
DCAR_031594 Daucus carota HOM05D005923 ORTHO05D007376 8.9e-213 744.2 644 58.4
Solyc11g008570.2 Solanum lycopersicum HOM05D005923 ORTHO05D007376 1.2e-212 743.8 667 55.3
Thhalv10020144m.g Eutrema salsugineum HOM05D005923 ORTHO05D007376 1.3e-211 740.3 679 54.5
Psat3g105160 Pisum sativum HOM05D005923 ORTHO05D007376 2.2e-211 739.6 674 55.2
EL10Ac4g10017 Beta vulgaris HOM05D005923 ORTHO05D007376 2.9e-211 739.2 673 55.6
Sc16g0010600 Simmondsia chinensis HOM05D005923 ORTHO05D007376 2.4e-210 736.1 681 54.5
Sp3g02330 Schrenkiella parvula HOM05D005923 ORTHO05D007376 7.1e-210 734.6 680 54.1
CARHR077340 Cardamine hirsuta HOM05D005923 ORTHO05D007376 9.2e-210 734.2 680 54.6
AT3G03305 Arabidopsis thaliana HOM05D005923 ORTHO05D007376 1.2e-209 733.8 679 54.1
AL3G12930 Arabidopsis lyrata HOM05D005923 ORTHO05D007376 4.6e-209 731.9 679 54.2
Carub.0003s0247 Capsella rubella HOM05D005923 ORTHO05D007376 4.6e-209 731.9 678 54.0
Cc09_g04040 Coffea canephora HOM05D005923 ORTHO05D007376 3.9e-208 728.8 644 55.9
THA.LOC104827232 Tarenaya hassleriana HOM05D005923 ORTHO05D007376 3.9e-208 728.8 680 53.7
PSO675G7036 Papaver somniferum HOM05D005923 ORTHO05D007376 8.6e-208 727.6 678 54.9
PSO732G0688 Papaver somniferum HOM05D005923 ORTHO05D007376 2.5e-207 726.1 678 54.4
Prupe.6G364500 Prunus persica HOM05D005923 ORTHO05D007376 9.6e-207 724.2 641 57.1
PGSC0003DMG400016251 Solanum tuberosum HOM05D005923 ORTHO05D007376 2.8e-206 722.6 628 55.6
Aa31LG5G13800 Aethionema arabicum HOM05D005923 ORTHO05D000304 1.4e-205 720.3 661 53.7
arahy.Tifrunner.gnm1.ann1.51VLQD Arachis hypogaea HOM05D005923 ORTHO05D007376 2.4e-205 719.5 679 52.7
Ah.04g159240 Amaranthus hybridus HOM05D005923 ORTHO05D007376 3.4e-204 715.7 671 54.7
SalBow1G1244 Salvia bowleyana HOM05D005923 ORTHO05D007376 9.9e-204 714.1 636 56.0
C05p63470 Brassica napus HOM05D005923 ORTHO05D007376 6.4e-203 711.4 678 53.1
A05p43880 Brassica napus HOM05D005923 ORTHO05D007376 1.1e-202 710.7 676 52.8
Aqoxy2G04094 Aquilegia oxysepala HOM05D005923 ORTHO05D007376 4.2e-202 708.8 675 54.5
BraA05t23125Z Brassica rapa HOM05D005923 ORTHO05D007376 9.3e-202 707.6 676 52.4
BolC5t35012H Brassica oleracea HOM05D005923 ORTHO05D007376 3.5e-201 705.7 678 52.5
MBI08_g20603_MAGBIO Magnolia biondii HOM05D005923 ORTHO05D007376 5.1e-200 701.8 686 53.5
Thecc.05G188500 Theobroma cacao HOM05D005923 ORTHO05D007376 4.6e-193 678.7 552 59.1
Os01g0894000 Oryza sativa ssp. japonica HOM05D005923 ORTHO05D007376 6.9e-189 664.8 694 48.3
Zm00001eb144980 Zea mays HOM05D005923 ORTHO05D007376 2.7e-185 652.9 688 47.5
ATR0824G241 Amborella trichopoda HOM05D005923 ORTHO05D007376 6.2e-182 641.7 688 48.0
HPP92_013562 Vanilla planifolia HOM05D005923 ORTHO05D007376 5.7e-175 618.6 679 46.5
Lj8A198T52 Lonicera japonica HOM05D005923 ORTHO05D007376 1.2e-172 610.9 653 51.8
unitig_46.g18570 Utricularia gibba HOM05D005923 ORTHO05D007376 2.5e-170 603.2 681 46.0
Gohir.A02G106500 Gossypium hirsutum HOM05D005923 ORTHO05D007376 1.8e-168 597.0 549 55.6
Nitab4.5_0009631g0020 Nicotiana tabacum HOM05D005923 ORTHO05D007376 7.4e-167 591.7 661 48.7
BcaC05g30305 Brassica carinata HOM05D000399 ORTHO05D000304 2.0e-164 583.6 653 47.6
Os07g0274100 Oryza sativa ssp. japonica HOM05D005923 ORTHO05D007376 1.4e-160 570.9 690 43.2
Ah.06g195310 Amaranthus hybridus HOM05D005923 ORTHO05D007376 9.4e-154 548.1 545 51.6
CDE09G0389 Ceratophyllum demersum HOM05D005923 ORTHO05D007376 4.1e-141 506.1 446 57.4
arahy.Tifrunner.gnm1.ann1.25XALN Arachis hypogaea HOM05D005923 ORTHO05D007376 6.4e-118 429.1 466 49.4
MELO3C008611.2 Cucumis melo HOM05D005923 ORTHO05D007376 7.8e-116 422.2 333 63.1
MBI12_g21502_MAGBIO Magnolia biondii HOM05D005923 ORTHO05D007376 1.9e-114 417.5 686 35.9
SMO228G0200 Selaginella moellendorffii HOM05D005923 ORTHO05D007376 1.4e-109 401.4 652 37.3
AagrBONN_evm.TU.Sc2ySwM_344.5471 Anthoceros agrestis HOM05D005923 ORTHO05D007376 6.2e-105 386.0 593 38.4
vmacro19542 Vaccinium macrocarpon HOM05D005923 ORTHO05D007376 1.2e-103 381.7 365 51.0
HPP92_028167 Vanilla planifolia HOM05D005923 ORTHO05D007376 1.3e-102 378.3 673 33.9
Atru.chr12.1657 Acer truncatum HOM05D005923 ORTHO05D007376 1.7e-102 377.9 424 47.9
Mapoly0048s0028 Marchantia polymorpha HOM05D005923 ORTHO05D007376 4.9e-102 376.3 752 33.9
ATR0564G177 Amborella trichopoda HOM05D005923 ORTHO05D007376 2.4e-101 374.0 643 36.5
Pp3c8_13610 Physcomitrium patens HOM05D005923 ORTHO05D007376 8.6e-99 365.5 730 34.1
Nn013s41460 Nelumbo nucifera HOM05D005923 ORTHO05D007376 1.4e-85 321.6 334 49.1
Pp3c23_21040 Physcomitrium patens HOM05D005923 ORTHO05D007376 4.6e-84 316.6 725 30.8
MD04G1248100 Malus domestica HOM05D005923 ORTHO05D007376 2.1e-76 291.2 332 48.2
Actinidia06786 Actinidia chinensis HOM05D005923 ORTHO05D007376 1.3e-67 261.9 279 50.2
Zm00001eb398210 Zea mays HOM05D005923 ORTHO05D007376 1.3e-62 245.4 549 30.4
Atru.chr12.1696 Acer truncatum HOM05D005923 ORTHO05D007376 2.6e-55 221.1 188 56.4
CDE06G0114 Ceratophyllum demersum HOM05D005923 ORTHO05D007376 2.3e-51 208.0 312 35.6
MD04G1248200 Malus domestica HOM05D005923 ORTHO05D007376 9.7e-42 176.0 161 50.3
Atru.chr12.1663 Acer truncatum HOM05D005923 ORTHO05D007376 1.4e-40 172.2 115 70.4
Nn1g09626 Nelumbo nucifera HOM05D005923 ORTHO05D007376 1.2e-39 169.1 115 70.4
Atru.chr12.1695 Acer truncatum HOM05D005923 ORTHO05D007376 3.8e-38 164.1 170 51.8
Pp3c20_18430 Physcomitrium patens HOM05D005923 ORTHO05D007376 5.5e-37 160.2 469 28.4
Atru.chr12.1656 Acer truncatum HOM05D005923 ORTHO05D007376 2.2e-30 138.3 125 58.4
Os03g0260100 Oryza sativa ssp. japonica HOM05D005923 ORTHO05D007376 1.7e-22 112.1 116 41.4
CDE02G4030 Ceratophyllum demersum HOM05D005923 ORTHO05D000203 1.2e-18 99.4 103 42.7
AL3G13260 Arabidopsis lyrata HOM05D005923 ORTHO05D007376 1.3e-17 95.9 74 56.8
Nitab4.5_0001853g0070 Nicotiana tabacum HOM05D005923 ORTHO05D007376 3.7e-17 94.4 79 53.2
Nitab4.5_0001853g0060 Nicotiana tabacum HOM05D005923 ORTHO05D007376 1.8e-16 92.0 79 50.6
Cre11.g478456 Chlamydomonas reinhardtii HOM05D005923 ORTHO05D007376 3.5e-07 61.2 204 27.0
Ciclev10013254m.g Citrus clementina HOM05D005923 ORTHO05D007376 1.0e-06 59.7 99 38.4
Atru.chr12.1658 Acer truncatum HOM05D005923 ORTHO05D007376 8.6e-06 56.6 33 75.8


User provided reference genes

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