Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA232G3411 Erigeron canadensis HOM05D006640 ORTHO05D008078 1.7e-92 342.8 199 100.0
HanXRQChr05g0147651 Helianthus annuus HOM05D006640 ORTHO05D008078 6.9e-73 277.7 199 78.4
HanXRQChr02g0057271 Helianthus annuus HOM05D006640 ORTHO05D008078 3.2e-70 268.9 199 77.9
GSVIVG01013394001 Vitis vinifera HOM05D006640 ORTHO05D008078 2.6e-64 249.2 199 63.8
CSS0000785 Camellia sinensis var. sinensis HOM05D006640 ORTHO05D008078 1.9e-62 243.0 199 62.3
Lsat_1_v5_gn_9_28760 Lactuca sativa HOM05D006640 ORTHO05D008078 2.7e-61 239.2 184 75.5
CiPaw.07G136100 Carya illinoinensis HOM05D006640 ORTHO05D008078 3.6e-61 238.8 199 60.8
QL02p015123 Quercus lobata HOM05D006640 ORTHO05D008078 1.8e-60 236.5 198 60.6
Lsat_1_v5_gn_0_27580 Lactuca sativa HOM05D006640 ORTHO05D008078 3.9e-60 235.3 199 70.4
Eucgr.F01788 Eucalyptus grandis HOM05D006640 ORTHO05D008078 8.8e-60 234.2 199 60.8
Haze_19181 Corylus avellana HOM05D006640 ORTHO05D008078 2.6e-59 232.6 199 57.8
Manes.13G069100 Manihot esculenta HOM05D006640 ORTHO05D008078 3.3e-59 232.3 199 59.3
Atru.chr3.582 Acer truncatum HOM05D006640 ORTHO05D008078 5.7e-59 231.5 199 58.8
Thecc.03G029100 Theobroma cacao HOM05D006640 ORTHO05D008078 1.3e-58 230.3 199 58.8
Cc10_g14910 Coffea canephora HOM05D006640 ORTHO05D008078 6.3e-58 228.0 198 60.6
MD15G1440200 Malus domestica HOM05D006640 ORTHO05D008078 1.1e-57 227.3 200 61.0
TAR625G0363 Trochodendron aralioides HOM05D006640 ORTHO05D008078 5.3e-57 224.9 199 57.8
Prupe.5G009200 Prunus persica HOM05D006640 ORTHO05D008078 9.1e-57 224.2 200 59.5
Ciclev10002549m.g Citrus clementina HOM05D006640 ORTHO05D008078 2.0e-56 223.0 199 56.8
Potri.005G253200 Populus trichocarpa HOM05D006640 ORTHO05D008078 2.0e-56 223.0 201 57.7
FAN04G1358 Fragaria x ananassa HOM05D006640 ORTHO05D008078 7.7e-56 221.1 200 58.0
Migut.E01492 Erythranthe guttata HOM05D006640 ORTHO05D008078 1.3e-55 220.3 198 56.1
CAN.G1138.9 Capsicum annuum HOM05D006640 ORTHO05D008078 1.7e-55 219.9 200 57.0
FAN18G3620 Fragaria x ananassa HOM05D006640 ORTHO05D008078 1.7e-55 219.9 200 58.0
PGR083G0938 Punica granatum HOM05D006640 ORTHO05D008078 2.2e-55 219.5 199 63.3
FvH4_5g25620 Fragaria vesca HOM05D006640 ORTHO05D008078 3.8e-55 218.8 200 57.5
MSTRG.990 Avicennia marina HOM05D006640 ORTHO05D008078 6.5e-55 218.0 198 57.1
Sopen04g036190 Solanum pennellii HOM05D006640 ORTHO05D008078 1.4e-54 216.9 200 55.0
vmacro05542 Vaccinium macrocarpon HOM05D006640 ORTHO05D008078 3.2e-54 215.7 184 59.8
Oeu011315.3 Olea europaea HOM05D006640 ORTHO05D008078 4.2e-54 215.3 207 55.6
EL10Ac3g05131 Beta vulgaris HOM05D006640 ORTHO05D008078 5.5e-54 214.9 199 54.8
Hund21079 Selenicereus undatus HOM05D006640 ORTHO05D008078 1.2e-53 213.8 199 53.8
Solyc04g082560.4 Solanum lycopersicum HOM05D001842 ORTHO05D001849 1.2e-53 213.8 200 54.0
Solyc08g069130.1 Solanum lycopersicum HOM05D006640 ORTHO05D008078 1.2e-53 213.8 200 54.0
SalBow1G3286 Salvia bowleyana HOM05D006640 ORTHO05D008078 2.1e-53 213.0 198 55.6
Gorai.006G062900 Gossypium raimondii HOM05D006640 ORTHO05D008078 2.7e-53 212.6 205 53.7
SalBow7G4342 Salvia bowleyana HOM05D006640 ORTHO05D008078 1.0e-52 210.7 198 55.6
RcHm_v2.0_Chr7g0215911 Rosa chinensis HOM05D006640 ORTHO05D008078 1.4e-52 210.3 200 56.0
Peaxi162Scf00680g00119 Petunia axillaris HOM05D006640 ORTHO05D008078 2.3e-52 209.5 200 56.0
Lalb_Chr01g0007731 Lupinus albus HOM05D006640 ORTHO05D008078 3.9e-52 208.8 197 53.3
SGA_v2.0_scaffold184G39969 Striga asiatica HOM05D006640 ORTHO05D008078 5.2e-52 208.4 200 56.5
Gohir.A09G046800 Gossypium hirsutum HOM05D006640 ORTHO05D008078 8.8e-52 207.6 205 52.2
Rhsim08G0078300 Rhododendron simsii HOM05D006640 ORTHO05D008078 8.8e-52 207.6 184 66.8
Lj6g0027905 Lotus japonicus HOM05D006640 ORTHO05D008078 4.4e-51 205.3 197 53.8
DCAR_013930 Daucus carota HOM05D006640 ORTHO05D008078 5.7e-51 204.9 206 54.9
CANSAT54G1336 Cannabis sativa HOM05D006640 ORTHO05D008078 1.3e-50 203.8 196 50.5
PSO541G3394 Papaver somniferum HOM05D006640 ORTHO05D008078 2.2e-50 203.0 200 55.0
Cfa020797 Carpinus fangiana HOM05D006640 ORTHO05D008078 2.8e-50 202.6 184 56.5
ClCG02G003390 Citrullus lanatus HOM05D006640 ORTHO05D008078 2.8e-50 202.6 199 54.8
PSO675G3428 Papaver somniferum HOM05D006640 ORTHO05D008078 3.7e-50 202.2 200 55.0
AUR62005948 Chenopodium quinoa HOM05D006640 ORTHO05D008078 4.8e-50 201.8 192 58.9
Cfa010319 Carpinus fangiana HOM05D006640 ORTHO05D008078 6.3e-50 201.4 184 55.4
Duzib205G0266 Durio zibethinus HOM05D006640 ORTHO05D008078 8.2e-50 201.1 185 55.1
Glyma.08G337400 Glycine max HOM05D001876 ORTHO05D002002 1.1e-49 200.7 197 53.8
MELO3C013247.2 Cucumis melo HOM05D006640 ORTHO05D008078 1.4e-49 200.3 199 54.8
CSS0028139 Camellia sinensis var. sinensis HOM05D006640 ORTHO05D008078 1.8e-49 199.9 199 54.3
COL.COLO4_22727 Corchorus olitorius HOM05D006640 ORTHO05D008078 1.8e-49 199.9 185 54.1
CsaV3_7G001930 Cucumis sativus L. HOM05D006640 ORTHO05D008078 1.8e-49 199.9 199 54.3
FAN08G2005 Fragaria x ananassa HOM05D006640 ORTHO05D008078 3.1e-49 199.1 195 54.4
Psat7g226480 Pisum sativum HOM05D006640 ORTHO05D008078 3.1e-49 199.1 200 53.0
Dinv27390 Davidia involucrata HOM05D006640 ORTHO05D008078 4.1e-49 198.7 170 60.0
Aa31LG9G12490 Aethionema arabicum HOM05D006640 ORTHO05D008078 7.0e-49 198.0 196 50.0
Ca_19713_v3 Cicer arietinum L. HOM05D006640 ORTHO05D008078 7.0e-49 198.0 238 47.5
Aqoxy6G01598 Aquilegia oxysepala HOM05D006640 ORTHO05D008078 1.6e-48 196.8 196 52.6
Medtr4g032370 Medicago truncatula HOM05D006640 ORTHO05D008078 1.6e-48 196.8 198 53.0
Thhalv10003275m.g Eutrema salsugineum HOM05D006640 ORTHO05D008078 4.5e-48 195.3 197 49.7
CSS0036253 Camellia sinensis var. sinensis HOM05D006640 ORTHO05D008078 7.7e-48 194.5 184 57.6
TPR.G34155 Trifolium pratense HOM05D006640 ORTHO05D008078 7.7e-48 194.5 200 52.5
Medtr1g103240 Medicago truncatula HOM05D006640 ORTHO05D008078 1.7e-47 193.4 199 50.3
Glyma.08G337600 Glycine max HOM05D003402 ORTHO05D003939 2.2e-47 193.0 184 54.9
CARHR179670 Cardamine hirsuta HOM05D006640 ORTHO05D008078 5.0e-47 191.8 197 50.8
SalBow6G0872 Salvia bowleyana HOM05D006640 ORTHO05D008078 5.0e-47 191.8 190 52.6
COL.COLO4_07395 Corchorus olitorius HOM05D006640 ORTHO05D008078 1.9e-46 189.9 201 50.7
Os10g0566900 Oryza sativa ssp. japonica HOM05D006640 ORTHO05D008078 1.9e-46 189.9 199 51.8
Carub.0008s0481 Capsella rubella HOM05D006640 ORTHO05D008078 4.2e-46 188.7 197 49.7
THA.LOC104820569 Tarenaya hassleriana HOM05D006640 ORTHO05D008078 4.2e-46 188.7 197 50.3
ATR0807G089 Amborella trichopoda HOM05D006640 ORTHO05D008078 5.5e-46 188.3 197 51.3
AT5G43822 Arabidopsis thaliana HOM05D006640 ORTHO05D008078 9.4e-46 187.6 197 48.7
AL8G16350 Arabidopsis lyrata HOM05D006640 ORTHO05D008078 2.1e-45 186.4 197 47.2
CDE02G0900 Ceratophyllum demersum HOM05D006640 ORTHO05D008078 2.3e-44 183.0 197 46.2
BcaC06g34624 Brassica carinata HOM05D006640 ORTHO05D008078 3.3e-43 179.1 197 47.7
BcaC06g31675 Brassica carinata HOM05D006640 ORTHO05D008078 5.7e-43 178.3 197 48.2
BraA06t27635Z Brassica rapa HOM05D006640 ORTHO05D008078 9.7e-43 177.6 197 46.7
AUR62028117 Chenopodium quinoa HOM05D006640 ORTHO05D008078 1.3e-42 177.2 174 62.1
Hma1.2p1_0612F.1_g188900 Hydrangea macrophylla HOM05D006640 ORTHO05D008078 2.2e-42 176.4 155 56.1
FAN13G1910 Fragaria x ananassa HOM05D006640 ORTHO05D008078 2.8e-42 176.0 232 44.8
MBI06_g19633_MAGBIO Magnolia biondii HOM05D006640 ORTHO05D008078 4.8e-42 175.3 181 51.9
Cpa.g.sc26.165 Carica papaya HOM05D006640 ORTHO05D008078 1.6e-40 170.2 184 48.9
Phvul.008G111000 Phaseolus vulgaris HOM05D006640 ORTHO05D008078 2.7e-40 169.5 184 48.9
MD08G1245100 Malus domestica HOM05D006640 ORTHO05D008078 3.8e-39 165.6 163 54.0
unitig_46.g18025 Utricularia gibba HOM05D006640 ORTHO05D008078 6.1e-37 158.3 204 42.2
Sp2g08620 Schrenkiella parvula HOM05D006218 ORTHO05D007338 5.2e-36 155.2 194 43.3
Nn5g31001 Nelumbo nucifera HOM05D006640 ORTHO05D008078 1.2e-35 154.1 146 57.5
Ah.13g071040 Amaranthus hybridus HOM05D006277 ORTHO05D008078 3.4e-35 152.5 174 46.0
HPP92_007449 Vanilla planifolia HOM05D006640 ORTHO05D008078 7.0e-33 144.8 185 44.9
Sabra05G0196400 Salix brachista HOM05D006640 ORTHO05D008078 9.1e-33 144.4 186 47.3
SHI14582 Sapria himalayana HOM05D006640 ORTHO05D008078 1.1e-30 137.5 162 46.9
VMungo0540G0999 Vigna mungo HOM05D006640 ORTHO05D008078 7.2e-30 134.8 142 50.7
Phvul.006G070300 Phaseolus vulgaris HOM05D006640 ORTHO05D008078 2.1e-29 133.3 137 49.6
Sc24g0000300 Simmondsia chinensis HOM05D006640 ORTHO05D008078 1.4e-28 130.6 101 62.4
Sed0007887 Sechium edule HOM05D006640 ORTHO05D008078 4.0e-28 129.0 146 47.3
Mapoly0033s0101 Marchantia polymorpha HOM05D006640 ORTHO05D008078 4.4e-27 125.6 192 37.5
Nitab4.5_0001208g0130 Nicotiana tabacum HOM05D006640 ORTHO05D008078 2.8e-26 122.9 102 63.7
Aqoxy2G03352 Aquilegia oxysepala HOM05D006640 ORTHO05D008078 1.4e-25 120.6 155 45.2
Zm00001eb327920 Zea mays HOM05D006640 ORTHO05D008078 1.4e-25 120.6 155 42.6
Pp3c20_21140 Physcomitrium patens HOM05D000227 ORTHO05D008078 4.5e-24 115.5 187 36.9
Lj4C809G7 Lonicera japonica HOM05D006640 ORTHO05D008078 1.3e-23 114.0 145 46.2
Nitab4.5_0010095g0020 Nicotiana tabacum HOM05D006640 ORTHO05D008078 2.9e-23 112.8 87 65.5
Actinidia35855 Actinidia chinensis HOM05D002342 ORTHO05D002407 8.6e-23 111.3 80 68.8
Nitab4.5_0000383g0410 Nicotiana tabacum HOM05D006640 ORTHO05D008078 1.6e-21 107.1 87 64.4
CSS0011114 Camellia sinensis var. sinensis HOM05D006640 ORTHO05D008078 8.0e-21 104.8 151 41.1
Gohir.D09G047201 Gossypium hirsutum HOM05D006640 ORTHO05D008078 8.9e-20 101.3 110 48.2
Duzib205G1379 Durio zibethinus HOM05D006640 ORTHO05D008078 1.7e-18 97.1 90 54.4
RcHm_v2.0_Chr3g0481381 Rosa chinensis HOM05D006640 ORTHO05D008078 1.7e-18 97.1 101 46.5
RcHm_v2.0_Chr3g0481391 Rosa chinensis HOM05D006640 ORTHO05D008078 1.1e-17 94.4 80 58.8
CBR_g30123 Chara braunii HOM05D006640 ORTHO05D008078 9.2e-17 91.3 190 30.5
Cfa015562 Carpinus fangiana HOM05D006640 ORTHO05D008078 7.8e-16 88.2 184 28.3
AagrBONN_evm.TU.Sc2ySwM_362.2824 Anthoceros agrestis HOM05D006640 ORTHO05D008078 1.3e-15 87.4 154 32.5
Peaxi162Scf00139g00094 Petunia axillaris HOM05D006640 ORTHO05D008078 9.5e-14 81.3 164 34.1
Aqoxy2G03351 Aquilegia oxysepala HOM05D006640 ORTHO05D008078 5.8e-11 72.0 59 59.3
Atru.chr3.42 Acer truncatum HOM05D006640 ORTHO05D008078 2.4e-09 66.6 55 56.4
MD08G1245200 Malus domestica HOM05D006640 ORTHO05D008078 5.4e-09 65.5 38 81.6
vmacro03672 Vaccinium macrocarpon HOM05D002991 ORTHO05D003480 2.7e-08 63.2 44 65.9
CDE04G0756 Ceratophyllum demersum HOM05D006640 ORTHO05D008078 1.3e-07 60.8 96 38.5
Phvul.006G060400 Phaseolus vulgaris HOM05D006640 ORTHO05D008078 1.3e-07 60.8 45 62.2


User provided reference genes

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