Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA232G3088 Erigeron canadensis HOM05D004681 ORTHO05D005541 5.7e-173 610.9 327 100.0
HanXRQChr09g0266261 Helianthus annuus HOM05D004681 ORTHO05D005541 1.2e-127 460.3 320 76.6
Lsat_1_v5_gn_4_183080 Lactuca sativa HOM05D004681 ORTHO05D005541 3.7e-116 422.2 319 71.5
HanXRQChr10g0297571 Helianthus annuus HOM05D004681 ORTHO05D005541 5.0e-113 411.8 362 65.2
Actinidia06358 Actinidia chinensis HOM05D004681 ORTHO05D005541 9.5e-112 407.5 327 63.9
Actinidia22469 Actinidia chinensis HOM05D004681 ORTHO05D005541 2.8e-111 406.0 322 63.7
Dinv25404 Davidia involucrata HOM05D004681 ORTHO05D005541 8.0e-111 404.4 320 64.7
GSVIVG01010902001 Vitis vinifera HOM05D004681 ORTHO05D005541 4.0e-110 402.1 316 63.0
Sopen07g005070 Solanum pennellii HOM05D004681 ORTHO05D005541 6.8e-110 401.4 321 63.2
Solyc07g009320.3 Solanum lycopersicum HOM05D004681 ORTHO05D005541 3.4e-109 399.1 321 62.9
Cc06_g22600 Coffea canephora HOM05D004681 ORTHO05D005541 7.5e-109 397.9 325 63.7
PGSC0003DMG400008514 Solanum tuberosum HOM05D004681 ORTHO05D005541 7.5e-109 397.9 321 65.1
Eucgr.C00132 Eucalyptus grandis HOM05D004681 ORTHO05D005541 4.9e-108 395.2 324 61.7
Nitab4.5_0010281g0010 Nicotiana tabacum HOM05D004681 ORTHO05D005541 4.9e-108 395.2 321 65.1
MSTRG.10452 Avicennia marina HOM05D004681 ORTHO05D005541 5.4e-107 391.7 329 62.0
Peaxi162Scf00324g00718 Petunia axillaris HOM05D004681 ORTHO05D005541 1.2e-106 390.6 321 61.4
Atru.chr7.819 Acer truncatum HOM05D004681 ORTHO05D005541 1.0e-105 387.5 317 61.5
QL12p032381 Quercus lobata HOM05D004681 ORTHO05D005541 3.0e-105 386.0 318 59.4
Cfa013431 Carpinus fangiana HOM05D004681 ORTHO05D005541 1.1e-104 384.0 326 60.4
CAN.G1668.9 Capsicum annuum HOM05D004681 ORTHO05D005541 1.9e-104 383.3 321 61.4
SalBow7G3904 Salvia bowleyana HOM05D004681 ORTHO05D005541 2.5e-104 382.9 326 62.3
Oeu000976.1 Olea europaea HOM05D004681 ORTHO05D005541 1.6e-103 380.2 323 61.6
CiPaw.07G195100 Carya illinoinensis HOM05D004681 ORTHO05D005541 4.7e-103 378.6 317 59.9
Dinv26443 Davidia involucrata HOM05D004681 ORTHO05D005541 4.7e-103 378.6 294 63.9
Prupe.1G079200 Prunus persica HOM05D004681 ORTHO05D005541 6.8e-102 374.8 319 57.4
Gohir.D08G028500 Gossypium hirsutum HOM05D004681 ORTHO05D005541 8.9e-102 374.4 317 59.9
SGA_v2.0_scaffold41G15864 Striga asiatica HOM05D004681 ORTHO05D005541 8.9e-102 374.4 324 61.1
CSS0025965 Camellia sinensis var. sinensis HOM05D004681 ORTHO05D005541 4.4e-101 372.1 320 64.1
CiPaw.08G033800 Carya illinoinensis HOM05D004681 ORTHO05D005541 4.4e-101 372.1 315 60.6
Gohir.A08G017900 Gossypium hirsutum HOM05D004681 ORTHO05D005541 4.4e-101 372.1 317 59.9
TWI63G0533 Tripterygium wilfordii HOM05D004681 ORTHO05D005541 1.3e-100 370.5 323 59.8
Rhsim13G0200500 Rhododendron simsii HOM05D004681 ORTHO05D005541 3.7e-100 369.0 368 54.6
ClCG06G013520 Citrullus lanatus HOM05D004681 ORTHO05D005541 4.9e-100 368.6 320 58.1
Duzib170G0205 Durio zibethinus HOM05D004681 ORTHO05D005541 4.9e-100 368.6 317 58.7
PGR044G2653 Punica granatum HOM05D004681 ORTHO05D005541 6.4e-100 368.2 325 60.9
CANSAT11G1051 Cannabis sativa HOM05D004681 ORTHO05D005541 3.2e-99 365.9 328 60.7
Ciclev10008916m.g Citrus clementina HOM05D004681 ORTHO05D005541 3.2e-99 365.9 321 59.5
Gorai.004G025600 Gossypium raimondii HOM05D004681 ORTHO05D005541 3.2e-99 365.9 328 57.9
Thecc.09G181200 Theobroma cacao HOM05D004681 ORTHO05D005541 3.2e-99 365.9 327 58.4
Duzib168G0714 Durio zibethinus HOM05D004681 ORTHO05D005541 4.1e-99 365.5 320 58.4
Nitab4.5_0000074g0040 Nicotiana tabacum HOM05D004681 ORTHO05D005541 7.1e-99 364.8 293 65.2
SalBow7G0268 Salvia bowleyana HOM05D004681 ORTHO05D005541 3.5e-98 362.5 346 57.5
RcHm_v2.0_Chr4g0400191 Rosa chinensis HOM05D004681 ORTHO05D005541 6.0e-98 361.7 319 58.9
Sc14g0001370 Simmondsia chinensis HOM05D004681 ORTHO05D005541 6.0e-98 361.7 321 56.7
MELO3C017439.2 Cucumis melo HOM05D004681 ORTHO05D005541 6.6e-97 358.2 323 61.3
MD13G1245600 Malus domestica HOM05D004681 ORTHO05D005541 8.6e-97 357.8 319 56.4
Cpa.g.sc95.29 Carica papaya HOM05D004681 ORTHO05D005541 1.1e-96 357.5 315 55.9
AUR62033246 Chenopodium quinoa HOM05D004681 ORTHO05D005541 7.3e-96 354.8 323 55.7
Migut.L01897 Erythranthe guttata HOM05D004681 ORTHO05D005541 9.6e-96 354.4 330 63.6
Manes.14G161401 Manihot esculenta HOM05D004681 ORTHO05D005541 9.6e-96 354.4 324 59.0
Aqoxy7G02735 Aquilegia oxysepala HOM05D004681 ORTHO05D005541 1.6e-95 353.6 333 55.6
EL10Ac8g18317 Beta vulgaris HOM05D004681 ORTHO05D005541 1.1e-94 350.9 326 55.5
Manes.04G060300 Manihot esculenta HOM05D004681 ORTHO05D005541 1.4e-94 350.5 324 58.3
Ah.09g230170 Amaranthus hybridus HOM05D004681 ORTHO05D005541 5.2e-94 348.6 329 55.0
FAN17G0253 Fragaria x ananassa HOM05D004681 ORTHO05D005541 5.2e-94 348.6 321 57.9
FvH4_4g07590 Fragaria vesca HOM05D004681 ORTHO05D005541 6.8e-94 348.2 322 55.6
PSO079G0045 Papaver somniferum HOM05D004681 ORTHO05D005541 1.2e-93 347.4 326 57.4
CSS0001946 Camellia sinensis var. sinensis HOM05D004681 ORTHO05D005541 1.5e-93 347.1 235 69.4
FAN22G1928 Fragaria x ananassa HOM05D004681 ORTHO05D005541 1.5e-93 347.1 322 55.0
Lj7A127G13 Lonicera japonica HOM05D004681 ORTHO05D005541 1.5e-93 347.1 272 64.0
FAN12G2798 Fragaria x ananassa HOM05D004681 ORTHO05D005541 9.9e-93 344.4 322 55.0
PSO423G0181 Papaver somniferum HOM05D004681 ORTHO05D005541 4.9e-92 342.0 321 55.8
CsaV3_1G031790 Cucumis sativus L. HOM05D004681 ORTHO05D005541 6.4e-92 341.7 323 57.0
RcHm_v2.0_Chr7g0191541 Rosa chinensis HOM05D004681 ORTHO05D005541 1.4e-91 340.5 318 54.4
Hund09046 Selenicereus undatus HOM05D004681 ORTHO05D005541 1.9e-91 340.1 322 55.6
MBI13_g31546_MAGBIO Magnolia biondii HOM05D004681 ORTHO05D005541 2.7e-90 336.3 328 56.1
SGA_v2.0_scaffold21G09637 Striga asiatica HOM05D004681 ORTHO05D005541 3.9e-89 332.4 326 55.2
unitig_578.g16069 Utricularia gibba HOM05D004681 ORTHO05D005541 5.6e-88 328.6 318 53.5
VMungo1215G0406 Vigna mungo HOM05D004681 ORTHO05D005541 1.1e-86 324.3 316 52.5
Potri.006G077100 Populus trichocarpa HOM05D004681 ORTHO05D005541 2.4e-86 323.2 323 56.0
Sp3g32480 Schrenkiella parvula HOM05D004681 ORTHO05D005541 2.4e-86 323.2 312 51.9
Glyma.13G099400 Glycine max HOM05D004681 ORTHO05D005541 1.5e-85 320.5 324 54.3
Potri.018G145508 Populus trichocarpa HOM05D004681 ORTHO05D005541 1.5e-85 320.5 292 56.5
BcaB03g16704 Brassica carinata HOM05D004681 ORTHO05D005541 3.4e-85 319.3 312 52.6
BcaB07g31622 Brassica carinata HOM05D004681 ORTHO05D005541 3.4e-85 319.3 312 51.9
AL3G52840 Arabidopsis lyrata HOM05D004681 ORTHO05D005541 5.8e-85 318.5 315 51.4
Phvul.003G142900 Phaseolus vulgaris HOM05D004681 ORTHO05D005541 5.8e-85 318.5 316 52.2
Glyma.17G060700 Glycine max HOM05D004681 ORTHO05D005541 1.3e-84 317.4 314 55.1
Sed0004411 Sechium edule HOM05D004681 ORTHO05D005541 1.7e-84 317.0 263 58.9
BcaC04g22869 Brassica carinata HOM05D004681 ORTHO05D005541 2.2e-84 316.6 312 51.0
THA.LOC104819968 Tarenaya hassleriana HOM05D004681 ORTHO05D005541 4.9e-84 315.5 323 54.5
A09p12190 Brassica napus HOM05D004681 ORTHO05D005541 6.4e-84 315.1 312 50.6
HanXRQChr04g0105751 Helianthus annuus HOM05D004681 ORTHO05D005541 6.4e-84 315.1 185 79.5
AT2G19080 Arabidopsis thaliana HOM05D004681 ORTHO05D005541 8.4e-84 314.7 312 52.9
BraA09t36865Z Brassica rapa HOM05D004681 ORTHO05D005541 1.1e-83 314.3 312 50.3
Thhalv10022785m.g Eutrema salsugineum HOM05D004681 ORTHO05D005541 1.1e-83 314.3 312 51.9
Aa31LG8G16140 Aethionema arabicum HOM05D004681 ORTHO05D005541 1.4e-83 313.9 312 53.2
Lalb_Chr15g0084091 Lupinus albus HOM05D004681 ORTHO05D005541 1.9e-83 313.5 331 53.8
BolC9t54347H Brassica oleracea HOM05D004681 ORTHO05D005541 3.2e-83 312.8 313 51.1
Glyma.15G164000 Glycine max HOM05D004681 ORTHO05D005541 4.2e-83 312.4 316 49.1
CARHR109600 Cardamine hirsuta HOM05D004681 ORTHO05D005541 5.4e-83 312.0 321 50.2
arahy.Tifrunner.gnm1.ann1.L4KBSE Arachis hypogaea HOM05D004681 ORTHO05D005541 2.7e-82 309.7 322 53.1
C09p14440 Brassica napus HOM05D004681 ORTHO05D005541 2.7e-82 309.7 312 49.7
Glyma.09G057900 Glycine max HOM05D004681 ORTHO05D005541 4.6e-82 308.9 323 49.2
Sabra06G0058400 Salix brachista HOM05D004681 ORTHO05D005541 4.6e-82 308.9 347 51.3
Carub.0003s3332 Capsella rubella HOM05D004681 ORTHO05D005541 6.0e-82 308.5 315 50.8
arahy.Tifrunner.gnm1.ann1.K04ERL Arachis hypogaea HOM05D004681 ORTHO05D005541 1.3e-81 307.4 322 53.1
BcaC06g36518 Brassica carinata HOM05D004681 ORTHO05D005541 3.9e-81 305.8 312 52.6
HPP92_004723 Vanilla planifolia HOM05D004681 ORTHO05D005541 8.7e-81 304.7 325 51.1
Lj6g0005497 Lotus japonicus HOM05D004681 ORTHO05D005541 1.1e-80 304.3 316 53.8
COL.COLO4_29315 Corchorus olitorius HOM05D004681 ORTHO05D005541 1.6e-79 300.4 318 52.8
arahy.Tifrunner.gnm1.ann1.KM341F Arachis hypogaea HOM05D004681 ORTHO05D005541 2.1e-79 300.1 328 51.5
ATR0626G278 Amborella trichopoda HOM05D004681 ORTHO05D005541 1.1e-78 297.7 321 54.2
arahy.Tifrunner.gnm1.ann1.LX7F61 Arachis hypogaea HOM05D004681 ORTHO05D005541 1.1e-78 297.7 328 54.0
Medtr2g036910 Medicago truncatula HOM05D004681 ORTHO05D005541 1.1e-78 297.7 331 52.0
Nn2g12745 Nelumbo nucifera HOM05D004681 ORTHO05D005541 2.6e-77 293.1 320 53.1
VMungo1309G2393 Vigna mungo HOM05D004681 ORTHO05D005541 2.6e-77 293.1 318 50.3
Phvul.009G237800 Phaseolus vulgaris HOM05D004681 ORTHO05D005541 9.9e-77 291.2 321 50.8
Medtr4g127630 Medicago truncatula HOM05D004681 ORTHO05D005541 2.2e-76 290.0 317 50.5
A07p01650 Brassica napus HOM05D004681 ORTHO05D005541 3.8e-76 289.3 323 49.8
BraA07t27967Z Brassica rapa HOM05D004681 ORTHO05D005541 3.8e-76 289.3 323 49.8
Os06g0168000 Oryza sativa ssp. japonica HOM05D004681 ORTHO05D005541 4.9e-76 288.9 322 52.5
Ca_02042_v3 Cicer arietinum L. HOM05D004681 ORTHO05D005541 2.4e-75 286.6 330 50.6
C07p03410 Brassica napus HOM05D004681 ORTHO05D005541 4.2e-75 285.8 312 50.3
BolC7t40740H Brassica oleracea HOM05D004681 ORTHO05D005541 4.2e-75 285.8 312 50.3
Psat0s736g0040 Pisum sativum HOM05D004681 ORTHO05D005541 4.2e-75 285.8 317 48.6
Lalb_Chr12g0199511 Lupinus albus HOM05D004681 ORTHO05D005541 5.4e-75 285.4 323 48.6
TPR.G5388 Trifolium pratense HOM05D004681 ORTHO05D005541 1.2e-74 284.3 320 51.2
Ca_21245_v3 Cicer arietinum L. HOM05D004410 ORTHO05D006134 5.1e-73 278.9 318 49.4
Lj4g0016729 Lotus japonicus HOM05D004681 ORTHO05D005541 1.5e-72 277.3 316 48.7
AUR62021331 Chenopodium quinoa HOM05D004681 ORTHO05D005541 3.3e-72 276.2 322 47.5
TPR.G9028 Trifolium pratense HOM05D004681 ORTHO05D005541 8.1e-71 271.6 329 49.2
DCAR_019823 Daucus carota HOM05D004410 ORTHO05D006134 1.8e-65 253.8 323 45.8
TAR636G1425 Trochodendron aralioides HOM05D004681 ORTHO05D005541 8.2e-63 245.0 228 59.2
Psat1g145840 Pisum sativum HOM05D004681 ORTHO05D005541 2.4e-62 243.4 201 57.2
CDE06G1906 Ceratophyllum demersum HOM05D004681 ORTHO05D005541 6.9e-62 241.9 328 45.1
vmacro23062 Vaccinium macrocarpon HOM05D004681 ORTHO05D005541 9.7e-56 221.5 277 47.3
SHI02877 Sapria himalayana HOM05D004681 ORTHO05D005541 8.2e-55 218.4 471 32.9
Mapoly0001s0301 Marchantia polymorpha HOM05D004681 ORTHO05D005541 4.1e-54 216.1 328 39.0
Potri.018G147625 Populus trichocarpa HOM05D004681 ORTHO05D005541 1.0e-52 211.5 333 41.4
Zm00001eb375500 Zea mays HOM05D004681 ORTHO05D005541 9.4e-51 204.9 182 53.3
Haze_21984 Corylus avellana HOM05D004681 ORTHO05D005541 2.1e-50 203.8 213 49.8
Pp3c12_12510 Physcomitrium patens HOM05D004681 ORTHO05D005541 4.6e-50 202.6 324 38.9
Pp3c4_10660 Physcomitrium patens HOM05D004681 ORTHO05D005541 1.4e-49 201.1 316 38.0
CAN.G609.4 Capsicum annuum HOM05D004681 ORTHO05D005541 1.3e-47 194.5 141 63.8
RcHm_v2.0_Chr7g0191431 Rosa chinensis HOM05D004681 ORTHO05D005541 1.1e-46 191.4 296 40.5
AagrBONN_evm.TU.Sc2ySwM_228.4196 Anthoceros agrestis HOM05D004681 ORTHO05D005541 7.4e-40 168.7 319 33.9
SGA_v2.0_scaffold41G15854 Striga asiatica HOM05D004681 ORTHO05D005541 2.8e-39 166.8 251 44.2
SMO358G0154 Selaginella moellendorffii HOM05D004681 ORTHO05D005541 4.8e-39 166.0 325 37.2
Ca_02046_v3 Cicer arietinum L. HOM05D004681 ORTHO05D005541 3.6e-34 149.8 228 46.1
CAN.G497.61 Capsicum annuum HOM05D004681 ORTHO05D005541 1.3e-31 141.4 109 58.7
Potri.001G065336 Populus trichocarpa HOM05D004681 ORTHO05D005541 2.8e-31 140.2 111 61.3
CAN.G266.1 Capsicum annuum HOM05D004681 ORTHO05D005541 3.0e-25 120.2 157 42.0
HanXRQChr04g0105741 Helianthus annuus HOM05D004681 ORTHO05D005541 4.0e-25 119.8 112 71.4
Potri.018G145080 Populus trichocarpa HOM05D004681 ORTHO05D005541 9.1e-22 108.6 173 48.0
CBR_g39348 Chara braunii HOM05D000019 ORTHO05D000002 5.0e-20 102.8 185 31.4
SMO367G0296 Selaginella moellendorffii HOM05D004681 ORTHO05D005541 1.1e-19 101.7 241 34.0
Potri.001G064609 Populus trichocarpa HOM05D004681 ORTHO05D005541 1.5e-19 101.3 77 59.7
Haze_21988 Corylus avellana HOM05D004681 ORTHO05D005541 3.2e-19 100.1 129 48.1
Haze_21985 Corylus avellana HOM05D004681 ORTHO05D005541 4.9e-15 86.3 113 54.9
QL05p087685 Quercus lobata HOM05D004681 ORTHO05D005541 6.3e-15 85.9 207 30.4
Potri.001G065000 Populus trichocarpa HOM05D004681 ORTHO05D005541 2.4e-14 84.0 102 50.0
vmacro04071 Vaccinium macrocarpon HOM05D004681 ORTHO05D005541 2.5e-11 73.9 108 51.9
AUR62034598 Chenopodium quinoa HOM05D022644 ORTHO05D003557 8.0e-10 68.9 52 57.7
Cre03.g177900 Chlamydomonas reinhardtii HOM05D004681 ORTHO05D005541 3.0e-09 67.0 229 24.0
SMO367G1182 Selaginella moellendorffii HOM05D004681 ORTHO05D005541 1.4e-06 58.2 173 27.7


User provided reference genes

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