Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA232G2871 Erigeron canadensis HOM05D004219 ORTHO05D004857 0.0e+00 1549.3 756 100.0
HanXRQChr09g0277221 Helianthus annuus HOM05D004219 ORTHO05D004857 0.0e+00 1267.3 746 84.2
Dinv20389 Davidia involucrata HOM05D004219 ORTHO05D004857 0.0e+00 1123.2 776 73.6
Lj5A30T66 Lonicera japonica HOM05D004219 ORTHO05D004857 0.0e+00 1106.7 759 73.0
CSS0000587 Camellia sinensis var. sinensis HOM05D004219 ORTHO05D004857 0.0e+00 1097.0 781 72.3
CSS0038823 Camellia sinensis var. sinensis HOM05D004219 ORTHO05D004857 0.0e+00 1095.1 781 72.2
Lsat_1_v5_gn_4_92081 Lactuca sativa HOM05D004219 ORTHO05D004857 0.0e+00 1093.2 717 78.2
Cc04_g00810 Coffea canephora HOM05D004219 ORTHO05D004857 0.0e+00 1087.8 777 71.3
Actinidia21828 Actinidia chinensis HOM05D004219 ORTHO05D004857 1.0e-310 1069.7 776 70.9
GSVIVG01016680001 Vitis vinifera HOM05D004219 ORTHO05D004857 5.6e-309 1063.9 769 69.8
Rhsim08G0243800 Rhododendron simsii HOM05D004219 ORTHO05D004857 1.3e-308 1062.8 804 68.8
TAR383G0549 Trochodendron aralioides HOM05D004219 ORTHO05D004857 3.8e-305 1051.2 780 68.7
Nn6g35715 Nelumbo nucifera HOM05D004219 ORTHO05D004857 6.5e-305 1050.4 781 68.5
Peaxi162Scf00177g00619 Petunia axillaris HOM05D004219 ORTHO05D004857 8.4e-305 1050.0 781 68.1
vmacro15080 Vaccinium macrocarpon HOM05D004219 ORTHO05D004857 1.1e-304 1049.7 792 68.9
Nitab4.5_0004589g0030 Nicotiana tabacum HOM05D004219 ORTHO05D004857 2.5e-304 1048.5 776 68.2
Nitab4.5_0000357g0090 Nicotiana tabacum HOM05D004219 ORTHO05D004857 5.5e-304 1047.3 777 68.1
PGSC0003DMG400028852 Solanum tuberosum HOM05D004219 ORTHO05D004857 1.0e-302 1043.1 775 68.3
DCAR_016092 Daucus carota HOM05D004219 ORTHO05D004857 3.0e-302 1041.6 767 69.5
Sopen12g024040 Solanum pennellii HOM05D004219 ORTHO05D004857 1.9e-301 1038.9 779 67.8
CAN.G1721.2 Capsicum annuum HOM05D004219 ORTHO05D004857 8.2e-300 1033.5 776 68.2
Solyc12g049570.3 Solanum lycopersicum HOM05D004219 ORTHO05D004857 8.2e-300 1033.5 779 67.5
Oeu059024.1 Olea europaea HOM05D004219 ORTHO05D004857 7.7e-298 1026.9 777 68.2
MBI13_g01684_MAGBIO Magnolia biondii HOM05D004219 ORTHO05D004857 2.2e-297 1025.4 780 66.9
TAR624G1175 Trochodendron aralioides HOM05D004219 ORTHO05D004857 1.1e-296 1023.1 789 66.7
Ciclev10007563m.g Citrus clementina HOM05D004219 ORTHO05D004857 1.9e-296 1022.3 764 67.8
CANSAT56G2968 Cannabis sativa HOM05D004219 ORTHO05D004857 4.2e-296 1021.1 776 66.5
FvH4_6g35710 Fragaria vesca HOM05D004219 ORTHO05D004857 2.7e-295 1018.5 777 66.5
FAN14G4832 Fragaria x ananassa HOM05D004219 ORTHO05D004857 2.7e-295 1018.5 777 66.5
MD09G1173700 Malus domestica HOM05D004219 ORTHO05D004857 7.9e-295 1016.9 780 67.7
MD17G1153300 Malus domestica HOM05D004219 ORTHO05D004857 7.9e-295 1016.9 780 67.3
RcHm_v2.0_Chr2g0147711 Rosa chinensis HOM05D004219 ORTHO05D004857 1.8e-294 1015.8 777 66.7
FAN09G1853 Fragaria x ananassa HOM05D004219 ORTHO05D004857 2.3e-294 1015.4 777 66.4
Prupe.3G031800 Prunus persica HOM05D004219 ORTHO05D004857 8.8e-294 1013.4 779 66.5
Duzib168G0770 Durio zibethinus HOM05D004219 ORTHO05D004857 1.7e-292 1009.2 765 68.2
CiPaw.01G212300 Carya illinoinensis HOM05D004219 ORTHO05D004857 2.2e-292 1008.8 774 66.0
FAN02G2730 Fragaria x ananassa HOM05D004219 ORTHO05D004857 6.3e-292 1007.3 777 65.9
Cfa003467 Carpinus fangiana HOM05D004219 ORTHO05D004857 3.1e-291 1005.0 771 65.4
Thecc.09G069400 Theobroma cacao HOM05D004219 ORTHO05D004857 4.5e-290 1001.1 765 68.0
GSVIVG01015005001 Vitis vinifera HOM05D004219 ORTHO05D004857 5.9e-290 1000.7 763 67.0
Potri.006G135500 Populus trichocarpa HOM05D004219 ORTHO05D004857 1.0e-289 1000.0 764 66.9
CiPaw.02G131700 Carya illinoinensis HOM05D004219 ORTHO05D004857 1.3e-289 999.6 772 65.3
QL05p001749 Quercus lobata HOM05D004219 ORTHO05D004857 1.7e-289 999.2 775 66.5
QL05p001473 Quercus lobata HOM05D004219 ORTHO05D004857 2.9e-289 998.4 775 66.5
Manes.03G045300 Manihot esculenta HOM05D004219 ORTHO05D004857 3.8e-289 998.0 766 66.4
Cpa.g.sc82.51 Carica papaya HOM05D004219 ORTHO05D004857 8.5e-289 996.9 763 66.6
Aqoxy7G00940 Aquilegia oxysepala HOM05D004219 ORTHO05D004857 2.5e-288 995.3 783 65.1
Migut.I01126 Erythranthe guttata HOM05D004219 ORTHO05D004857 2.5e-288 995.3 779 66.4
Manes.16G089900 Manihot esculenta HOM05D004219 ORTHO05D004857 2.3e-286 988.8 767 66.1
Gorai.001G018000 Gossypium raimondii HOM05D004219 ORTHO05D004857 5.1e-286 987.6 765 66.7
Gohir.A07G017500 Gossypium hirsutum HOM05D004219 ORTHO05D004857 6.7e-286 987.3 766 66.7
TWI34G1001 Tripterygium wilfordii HOM05D004219 ORTHO05D004857 2.0e-285 985.7 766 65.8
TWI63G0110 Tripterygium wilfordii HOM05D004219 ORTHO05D004857 7.4e-285 983.8 768 65.8
Duzib187G1712 Durio zibethinus HOM05D004219 ORTHO05D004857 1.7e-284 982.6 766 66.7
Sabra18G0057200 Salix brachista HOM05D004219 ORTHO05D004857 1.7e-284 982.6 769 66.1
Duzib150G0120 Durio zibethinus HOM05D004219 ORTHO05D004857 2.2e-284 982.2 773 67.1
Gorai.009G038600 Gossypium raimondii HOM05D004219 ORTHO05D004857 2.2e-284 982.2 764 67.3
Potri.018G064500 Populus trichocarpa HOM05D004219 ORTHO05D004857 5.3e-283 977.6 769 66.3
Glyma.16G013100 Glycine max HOM05D004219 ORTHO05D004857 7.0e-283 977.2 779 63.8
Gohir.D05G038100 Gossypium hirsutum HOM05D004219 ORTHO05D004857 7.0e-283 977.2 764 67.1
QL11p003182 Quercus lobata HOM05D004219 ORTHO05D004857 2.0e-282 975.7 774 66.0
Glyma.07G045100 Glycine max HOM05D004219 ORTHO05D004857 4.5e-282 974.5 776 63.8
Gohir.A05G036600 Gossypium hirsutum HOM05D004219 ORTHO05D004857 1.7e-281 972.6 763 66.6
Gorai.010G095800 Gossypium raimondii HOM05D004219 ORTHO05D004857 1.1e-280 969.9 765 66.5
Hund05707 Selenicereus undatus HOM05D004219 ORTHO05D004857 4.7e-279 964.5 776 63.5
Gohir.A06G084100 Gossypium hirsutum HOM05D004219 ORTHO05D004857 1.8e-278 962.6 764 66.4
PSO135G0149 Papaver somniferum HOM05D004219 ORTHO05D004857 3.0e-278 961.8 763 63.6
Phvul.010G123900 Phaseolus vulgaris HOM05D004219 ORTHO05D004857 1.5e-277 959.5 779 63.0
Lj3g0000905 Lotus japonicus HOM05D004219 ORTHO05D004857 5.7e-277 957.6 779 62.6
Eucgr.C00764 Eucalyptus grandis HOM05D004219 ORTHO05D004857 1.8e-275 952.6 766 64.0
PSO724G0293 Papaver somniferum HOM05D004219 ORTHO05D004857 1.8e-275 952.6 771 63.3
Sc15g0000780 Simmondsia chinensis HOM05D004219 ORTHO05D004857 7.7e-274 947.2 769 63.2
Gohir.D06G082300 Gossypium hirsutum HOM05D004219 ORTHO05D004857 7.2e-272 940.6 760 65.4
TPR.G18148 Trifolium pratense HOM05D004219 ORTHO05D004857 7.2e-272 940.6 785 62.4
Psat4g165840 Pisum sativum HOM05D004219 ORTHO05D004857 2.7e-271 938.7 784 62.0
Medtr2g044550 Medicago truncatula HOM05D004219 ORTHO05D004857 6.1e-271 937.6 771 62.5
Glyma.09G074300 Glycine max HOM05D004219 ORTHO05D004857 2.3e-270 935.6 770 62.3
VMungo0331G1133 Vigna mungo HOM05D004219 ORTHO05D004857 2.3e-270 935.6 777 61.4
Lj6g0016067 Lotus japonicus HOM05D004219 ORTHO05D004857 4.4e-269 931.4 771 62.4
THA.LOC104799604 Tarenaya hassleriana HOM05D004219 ORTHO05D004857 9.7e-269 930.2 764 62.4
Lalb_Chr08g0232811 Lupinus albus HOM05D004219 ORTHO05D004857 1.3e-268 929.9 765 61.8
Ca_23428_v3 Cicer arietinum L. HOM05D004219 ORTHO05D004857 1.7e-268 929.5 788 61.9
Medtr8g022980 Medicago truncatula HOM05D004219 ORTHO05D004857 4.8e-268 927.9 772 62.8
Lalb_Chr23g0276141 Lupinus albus HOM05D004219 ORTHO05D004857 3.1e-267 925.2 767 61.3
Phvul.009G223200 Phaseolus vulgaris HOM05D004219 ORTHO05D004857 4.1e-267 924.9 769 62.3
VMungo1309G2772 Vigna mungo HOM05D004219 ORTHO05D004857 9.1e-267 923.7 769 61.8
Gohir.D07G017300 Gossypium hirsutum HOM05D004219 ORTHO05D004857 1.2e-266 923.3 765 63.1
Glyma.U031325 Glycine max HOM05D004219 ORTHO05D004857 1.6e-266 922.9 770 61.7
Lalb_Chr04g0253891 Lupinus albus HOM05D004219 ORTHO05D004857 4.5e-266 921.4 780 61.2
ATR0099G075 Amborella trichopoda HOM05D004219 ORTHO05D004857 1.7e-265 919.5 807 60.2
CDE04G3533 Ceratophyllum demersum HOM05D004219 ORTHO05D004857 2.9e-265 918.7 777 61.3
CsaV3_3G030980 Cucumis sativus L. HOM05D004219 ORTHO05D004857 3.8e-265 918.3 772 60.9
AUR62025624 Chenopodium quinoa HOM05D004219 ORTHO05D004857 6.5e-265 917.5 806 58.7
TPR.G26875 Trifolium pratense HOM05D004219 ORTHO05D004857 8.5e-265 917.1 772 62.3
Sed0013084 Sechium edule HOM05D004219 ORTHO05D004857 3.2e-264 915.2 779 60.3
Carub.0005s0906 Capsella rubella HOM05D004219 ORTHO05D004857 4.2e-264 914.8 765 62.6
Sp5g18450 Schrenkiella parvula HOM05D004219 ORTHO05D004857 5.5e-264 914.4 764 61.9
MELO3C022696.2 Cucumis melo HOM05D004219 ORTHO05D004857 2.1e-263 912.5 773 60.9
Lalb_Chr17g0343311 Lupinus albus HOM05D004219 ORTHO05D004857 2.1e-263 912.5 777 60.5
AL5G21340 Arabidopsis lyrata HOM05D004219 ORTHO05D004857 3.6e-263 911.8 766 62.3
CARHR153440 Cardamine hirsuta HOM05D004219 ORTHO05D004857 3.6e-263 911.8 764 61.5
Sed0013718 Sechium edule HOM05D004219 ORTHO05D004857 3.6e-263 911.8 778 59.8
Sed0001277 Sechium edule HOM05D004219 ORTHO05D004857 8.0e-263 910.6 779 60.2
BcaC01g02109 Brassica carinata HOM05D004219 ORTHO05D004857 1.0e-262 910.2 767 61.8
AT3G43240 Arabidopsis thaliana HOM05D004219 ORTHO05D004857 2.3e-262 909.1 766 62.0
Thhalv10002415m.g Eutrema salsugineum HOM05D004219 ORTHO05D004857 4.0e-262 908.3 765 61.7
PGR142G3683 Punica granatum HOM05D004219 ORTHO05D004857 2.0e-261 906.0 766 61.4
A06p22640 Brassica napus HOM05D004219 ORTHO05D004857 3.4e-261 905.2 768 61.3
HPP92_019289 Vanilla planifolia HOM05D004219 ORTHO05D004857 8.3e-260 900.6 779 59.8
ClCG09G001310 Citrullus lanatus HOM05D004219 ORTHO05D004857 1.8e-259 899.4 779 59.8
CsaV3_7G034010 Cucumis sativus L. HOM05D004219 ORTHO05D004857 2.4e-259 899.0 783 60.0
Haze_16129 Corylus avellana HOM05D004219 ORTHO05D004857 4.1e-259 898.3 825 57.6
BcaB01g01229 Brassica carinata HOM05D004219 ORTHO05D004857 1.2e-258 896.7 767 60.8
BolC3t19092H Brassica oleracea HOM05D004219 ORTHO05D004857 1.0e-257 893.6 771 61.2
EL10Ac7g16483 Beta vulgaris HOM05D004219 ORTHO05D004857 1.9e-256 889.4 770 60.3
Aqoxy7G04168 Aquilegia oxysepala HOM05D004219 ORTHO05D004857 1.6e-255 886.3 770 60.0
Cfa002934 Carpinus fangiana HOM05D004219 ORTHO05D004857 4.7e-255 884.8 737 63.6
Zm00001eb313820 Zea mays HOM05D004219 ORTHO05D004857 8.9e-254 880.6 763 59.8
TAR626G0374 Trochodendron aralioides HOM05D004219 ORTHO05D004857 1.7e-252 876.3 762 60.5
Hma1.2p1_0229F.1_g097030 Hydrangea macrophylla HOM05D004219 ORTHO05D004857 4.9e-252 874.8 714 64.6
ClCG07G014320 Citrullus lanatus HOM05D004219 ORTHO05D004857 5.0e-249 864.8 754 60.2
Zm00001eb099960 Zea mays HOM05D004219 ORTHO05D004857 6.6e-249 864.4 763 58.5
Aa31LG4G12950 Aethionema arabicum HOM05D004219 ORTHO05D004857 9.5e-248 860.5 781 58.5
unitig_26.g8917 Utricularia gibba HOM05D004219 ORTHO05D004857 2.6e-245 852.4 778 58.1
PGR044G2279 Punica granatum HOM05D004219 ORTHO05D004857 6.4e-244 847.8 770 57.5
SGA_v2.0_scaffold71G23915 Striga asiatica HOM05D004219 ORTHO05D004857 1.7e-241 839.7 773 59.5
Os08g0451400 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 2.3e-241 839.3 764 56.8
Ca_02284_v3 Cicer arietinum L. HOM05D004219 ORTHO05D004857 4.7e-239 831.6 777 58.2
Ah.08g217310 Amaranthus hybridus HOM05D004219 ORTHO05D004857 1.1e-238 830.5 771 56.4
COL.COLO4_21198 Corchorus olitorius HOM05D004219 ORTHO05D004857 1.2e-234 817.0 766 58.1
Haze_26074 Corylus avellana HOM05D004219 ORTHO05D004857 3.9e-233 812.0 872 53.3
MELO3C024313.2 Cucumis melo HOM05D004219 ORTHO05D004857 4.3e-232 808.5 758 56.9
arahy.Tifrunner.gnm1.ann1.BBC6WZ Arachis hypogaea HOM05D004219 ORTHO05D004857 1.6e-226 790.0 771 56.8
arahy.Tifrunner.gnm1.ann1.82J223 Arachis hypogaea HOM05D004219 ORTHO05D004857 4.3e-224 781.9 770 56.0
Eucgr.I02158 Eucalyptus grandis HOM05D004219 ORTHO05D004857 9.6e-224 780.8 751 56.5
Sabra06G0106200 Salix brachista HOM05D004219 ORTHO05D004857 7.3e-208 728.0 697 58.1
Psat1g137920 Pisum sativum HOM05D004219 ORTHO05D004857 3.5e-202 709.1 677 56.4
AUR62001416 Chenopodium quinoa HOM05D004219 ORTHO05D004857 1.2e-197 694.1 737 51.4
Actinidia24435 Actinidia chinensis HOM05D004219 ORTHO05D004857 1.9e-187 660.2 766 49.5
Mapoly0094s0004 Marchantia polymorpha HOM05D004219 ORTHO05D004857 9.3e-187 657.9 759 47.3
Zm00001eb040700 Zea mays HOM05D004219 ORTHO05D004857 1.1e-171 607.8 747 44.8
Pp3c15_1350 Physcomitrium patens HOM05D004219 ORTHO05D004857 9.7e-168 594.7 763 43.6
SMO133G0025 Selaginella moellendorffii HOM05D004219 ORTHO05D004857 7.7e-165 585.1 785 43.6
Pp3c6_26590 Physcomitrium patens HOM05D004219 ORTHO05D004857 2.5e-163 580.1 808 41.6
BraA06t25350Z Brassica rapa HOM05D004219 ORTHO05D004857 2.2e-156 557.0 435 64.4
SEGI_01121 Sequoiadendron giganteum HOM05D004219 ORTHO05D004857 2.2e-148 530.4 785 39.1
Atru.chr7.1780 Acer truncatum HOM05D004219 ORTHO05D004857 2.1e-146 523.9 419 64.2
unitig_749.g14037 Utricularia gibba HOM05D004219 ORTHO05D004857 2.6e-144 516.9 395 66.3
arahy.Tifrunner.gnm1.ann1.B45F8N Arachis hypogaea HOM05D004219 ORTHO05D004857 3.8e-140 503.1 392 64.0
arahy.Tifrunner.gnm1.ann1.W70I1I Arachis hypogaea HOM05D004219 ORTHO05D004857 3.8e-140 503.1 392 64.0
AagrBONN_evm.TU.Sc2ySwM_344.4361 Anthoceros agrestis HOM05D004219 ORTHO05D004857 1.3e-135 488.0 561 47.6
Atru.chr7.1779 Acer truncatum HOM05D004219 ORTHO05D004857 2.6e-128 463.8 280 78.9
CDE06G0638 Ceratophyllum demersum HOM05D004219 ORTHO05D004857 3.5e-117 426.8 462 50.6
CDE06G2764 Ceratophyllum demersum HOM05D004219 ORTHO05D004857 3.0e-116 423.7 255 77.6
Os08g0451700 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 1.5e-104 384.8 431 47.1
CBR_g66811 Chara braunii HOM05D004219 ORTHO05D004857 2.4e-97 360.9 743 34.7
Os09g0434100 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 5.1e-68 263.5 268 51.9
Cre10.g429880 Chlamydomonas reinhardtii HOM05D004219 ORTHO05D004857 3.3e-67 260.8 758 29.4
unitig_749.g14036 Utricularia gibba HOM05D004219 ORTHO05D004857 2.0e-59 235.0 288 47.9
Medtr8g038730 Medicago truncatula HOM05D004219 ORTHO05D004857 8.8e-52 209.5 189 55.6
Nn5g27342 Nelumbo nucifera HOM05D004219 ORTHO05D004857 6.1e-45 186.8 142 67.6
TAR383G0322 Trochodendron aralioides HOM05D004219 ORTHO05D004857 1.1e-38 166.0 149 61.7
Os09g0434000 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 2.5e-38 164.9 83 83.1
FAN05G1825 Fragaria x ananassa HOM05D004219 ORTHO05D004857 1.6e-29 135.6 65 87.7
Os08g0361000 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 2.0e-19 102.1 167 35.3
Os08g0451500 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 5.7e-19 100.5 138 40.6
Oeu028234.1 Olea europaea HOM05D004219 ORTHO05D004857 4.3e-14 84.3 88 50.0
MCO07G528 Micromonas commoda HOM05D004219 ORTHO05D004857 6.8e-12 77.0 103 40.8
BolSC21t60256H Brassica oleracea HOM05D020425 ORTHO05D021983 4.4e-11 74.3 108 40.7
AUR62025956 Chenopodium quinoa HOM05D000121 ORTHO05D024978 2.9e-10 71.6 66 57.6
C03p67880 Brassica napus HOM05D020425 ORTHO05D021983 3.2e-09 68.2 101 38.6


User provided reference genes

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