Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA232G2741 Erigeron canadensis HOM05D003680 ORTHO05D004264 4.1e-204 714.5 368 100.0
HanXRQChr16g0504641 Helianthus annuus HOM05D003680 ORTHO05D004264 1.6e-83 313.9 390 48.7
Lsat_1_v5_gn_4_76320 Lactuca sativa HOM05D003680 ORTHO05D004264 3.3e-76 289.7 431 42.7
Rhsim08G0175600 Rhododendron simsii HOM05D003680 ORTHO05D004264 2.4e-23 114.0 142 47.9
vmacro19321 Vaccinium macrocarpon HOM05D003680 ORTHO05D004264 3.2e-23 113.6 131 49.6
vmacro23077 Vaccinium macrocarpon HOM05D003680 ORTHO05D004264 3.2e-23 113.6 131 49.6
Dinv38553 Davidia involucrata HOM05D003680 ORTHO05D004264 1.2e-22 111.7 141 46.8
RcHm_v2.0_Chr7g0192951 Rosa chinensis HOM05D003680 ORTHO05D004264 2.3e-21 107.5 141 41.1
Ciclev10019708m.g Citrus clementina HOM05D003680 ORTHO05D004264 3.0e-21 107.1 146 39.7
Peaxi162Scf00129g01425 Petunia axillaris HOM05D003680 ORTHO05D004264 3.9e-21 106.7 340 27.4
TAR374G0695 Trochodendron aralioides HOM05D003680 ORTHO05D004264 5.1e-21 106.3 114 48.2
Oeu057059.1 Olea europaea HOM05D003680 ORTHO05D004264 8.7e-21 105.5 342 28.7
Cfa019179 Carpinus fangiana HOM05D003680 ORTHO05D004264 1.5e-20 104.8 225 34.7
Potri.T125008 Populus trichocarpa HOM05D003680 ORTHO05D004264 1.9e-20 104.4 453 25.8
CANSAT80G2707 Cannabis sativa HOM05D003680 ORTHO05D004264 1.3e-19 101.7 169 34.3
Haze_07557 Corylus avellana HOM05D003680 ORTHO05D004264 1.6e-19 101.3 160 41.2
CSS0025347 Camellia sinensis var. sinensis HOM05D000527 ORTHO05D000559 2.1e-19 100.9 167 38.9
CSS0032677 Camellia sinensis var. sinensis HOM05D000527 ORTHO05D000559 2.1e-19 100.9 167 38.9
COL.COLO4_29093 Corchorus olitorius HOM05D003680 ORTHO05D004264 2.1e-19 100.9 351 26.8
Actinidia19347 Actinidia chinensis HOM05D003680 ORTHO05D004264 3.7e-19 100.1 143 44.8
Aqoxy3G01124 Aquilegia oxysepala HOM05D003680 ORTHO05D004264 3.7e-19 100.1 462 23.8
Prupe.5G168500 Prunus persica HOM05D003680 ORTHO05D004264 3.7e-19 100.1 165 35.2
CDE06G0754 Ceratophyllum demersum HOM05D003680 ORTHO05D000787 4.8e-19 99.8 357 26.6
QL10p008427 Quercus lobata HOM05D003680 ORTHO05D004264 4.8e-19 99.8 171 37.4
TAR622G0154 Trochodendron aralioides HOM05D003680 ORTHO05D004264 4.8e-19 99.8 144 43.1
MD14G1175200 Malus domestica HOM05D003680 ORTHO05D004264 1.8e-18 97.8 254 28.7
FAN08G0581 Fragaria x ananassa HOM05D003680 ORTHO05D004264 2.4e-18 97.4 148 37.2
MD06G1169700 Malus domestica HOM05D003680 ORTHO05D004264 2.4e-18 97.4 213 31.5
Thhalv10020517m.g Eutrema salsugineum HOM05D003680 ORTHO05D004264 4.0e-18 96.7 393 26.7
Thecc.04G015600 Theobroma cacao HOM05D003680 ORTHO05D004264 5.3e-18 96.3 144 39.6
GSVIVG01032424001 Vitis vinifera HOM05D003680 ORTHO05D004264 9.0e-18 95.5 380 26.8
CiPaw.12G029200 Carya illinoinensis HOM05D003680 ORTHO05D004264 1.2e-17 95.1 223 33.6
Lj9P445T42 Lonicera japonica HOM05D003680 ORTHO05D004264 1.2e-17 95.1 111 45.0
Dinv35099 Davidia involucrata HOM05D003680 ORTHO05D004264 1.5e-17 94.7 421 25.2
FAN04G1021 Fragaria x ananassa HOM05D003680 ORTHO05D004264 1.5e-17 94.7 448 23.4
Potri.012G083200 Populus trichocarpa HOM05D003680 ORTHO05D004264 1.5e-17 94.7 452 25.2
FvH4_4g26262 Fragaria vesca HOM05D003680 ORTHO05D004264 2.0e-17 94.4 128 43.0
FAN02G4059 Fragaria x ananassa HOM05D003680 ORTHO05D004264 2.0e-17 94.4 128 43.0
FAN12G0372 Fragaria x ananassa HOM05D003680 ORTHO05D004264 2.0e-17 94.4 128 43.0
FAN12G1559 Fragaria x ananassa HOM05D003680 ORTHO05D004264 2.0e-17 94.4 128 43.0
Gorai.012G063600 Gossypium raimondii HOM05D003680 ORTHO05D004264 2.0e-17 94.4 160 37.5
Eucgr.I00119 Eucalyptus grandis HOM05D003680 ORTHO05D004264 2.6e-17 94.0 318 25.2
Sopen02g031250 Solanum pennellii HOM05D003680 ORTHO05D004264 2.6e-17 94.0 423 23.9
Gohir.D04G056700 Gossypium hirsutum HOM05D003680 ORTHO05D004264 3.4e-17 93.6 141 39.7
MBI10_g00729_MAGBIO Magnolia biondii HOM05D003680 ORTHO05D004264 4.5e-17 93.2 133 40.6
Thecc.03G023400 Theobroma cacao HOM05D003680 ORTHO05D004264 4.5e-17 93.2 231 32.0
FAN05G0183 Fragaria x ananassa HOM05D003680 ORTHO05D004264 7.6e-17 92.4 173 35.3
Solyc02g086520.3 Solanum lycopersicum HOM05D003680 ORTHO05D004264 7.6e-17 92.4 415 24.1
FAN13G0261 Fragaria x ananassa HOM05D003680 ORTHO05D004264 1.7e-16 91.3 148 35.8
PGSC0003DMG400028065 Solanum tuberosum HOM05D003680 ORTHO05D004264 1.7e-16 91.3 426 23.2
MBI10_g00728_MAGBIO Magnolia biondii HOM05D003680 ORTHO05D004264 2.2e-16 90.9 135 40.0
Nitab4.5_0000419g0090 Nicotiana tabacum HOM05D003680 ORTHO05D004264 2.9e-16 90.5 168 36.3
Manes.06G108400 Manihot esculenta HOM05D003680 ORTHO05D004264 3.8e-16 90.1 450 24.2
Manes.15G166300 Manihot esculenta HOM05D003680 ORTHO05D004264 3.8e-16 90.1 128 42.2
Sabra12G0059900 Salix brachista HOM05D003680 ORTHO05D004264 3.8e-16 90.1 456 25.0
COL.COLO4_30132 Corchorus olitorius HOM05D000527 ORTHO05D000559 6.4e-16 89.4 378 26.7
Gohir.A11G066900 Gossypium hirsutum HOM05D003680 ORTHO05D004264 6.4e-16 89.4 211 31.3
Nitab4.5_0001890g0010 Nicotiana tabacum HOM05D003680 ORTHO05D004264 8.4e-16 89.0 113 42.5
PGR083G1310 Punica granatum HOM05D003680 ORTHO05D004264 8.4e-16 89.0 114 44.7
Duzib187G1135 Durio zibethinus HOM05D003655 ORTHO05D004065 1.1e-15 88.6 144 38.2
QL02p075129 Quercus lobata HOM05D003680 ORTHO05D004264 1.4e-15 88.2 140 39.3
RcHm_v2.0_Chr2g0132111 Rosa chinensis HOM05D003680 ORTHO05D004264 1.4e-15 88.2 201 31.3
Ah.06g187080 Amaranthus hybridus HOM05D003680 ORTHO05D004264 1.9e-15 87.8 122 41.8
AUR62043212 Chenopodium quinoa HOM05D003680 ORTHO05D004264 1.9e-15 87.8 180 33.3
PSO017G2107 Papaver somniferum HOM05D003680 ORTHO05D004264 1.9e-15 87.8 144 39.6
Duzib147G1439 Durio zibethinus HOM05D003680 ORTHO05D004264 2.5e-15 87.4 111 43.2
Haze_14726 Corylus avellana HOM05D003680 ORTHO05D004264 3.2e-15 87.0 163 36.8
CSS0043829 Camellia sinensis var. sinensis HOM05D003680 ORTHO05D004264 4.2e-15 86.7 440 25.2
Gohir.A05G357400 Gossypium hirsutum HOM05D003680 ORTHO05D004264 4.2e-15 86.7 84 51.2
TWI36G0939 Tripterygium wilfordii HOM05D003680 ORTHO05D004264 4.2e-15 86.7 113 40.7
CAN.G473.3 Capsicum annuum HOM05D003680 ORTHO05D004264 5.5e-15 86.3 219 30.6
Cfa007382 Carpinus fangiana HOM05D003680 ORTHO05D004264 5.5e-15 86.3 215 34.0
FAN25G3522 Fragaria x ananassa HOM05D003680 ORTHO05D004264 5.5e-15 86.3 123 37.4
Nitab4.5_0006802g0060 Nicotiana tabacum HOM05D003680 ORTHO05D004264 5.5e-15 86.3 80 53.8
Prupe.1G550900 Prunus persica HOM05D003680 ORTHO05D004264 5.5e-15 86.3 175 35.4
ECA246G0141 Erigeron canadensis HOM05D003680 ORTHO05D004264 7.1e-15 85.9 426 25.4
Actinidia06002 Actinidia chinensis HOM05D003680 ORTHO05D004264 9.3e-15 85.5 79 54.4
Aa31LG5G10720 Aethionema arabicum HOM05D003680 ORTHO05D004264 9.3e-15 85.5 118 40.7
PSO478G2404 Papaver somniferum HOM05D003680 ORTHO05D004264 9.3e-15 85.5 144 38.2
Hund02282 Selenicereus undatus HOM05D003680 ORTHO05D004264 9.3e-15 85.5 80 51.2
Sp3g00490 Schrenkiella parvula HOM05D003680 ORTHO05D004264 1.6e-14 84.7 111 42.3
CDE07G1653 Ceratophyllum demersum HOM05D003680 ORTHO05D004264 2.1e-14 84.3 120 42.5
FvH4_5g05870 Fragaria vesca HOM05D003680 ORTHO05D004264 2.1e-14 84.3 154 33.8
Manes.15G166200 Manihot esculenta HOM05D003680 ORTHO05D004264 2.1e-14 84.3 123 43.1
PGSC0003DMG400012598 Solanum tuberosum HOM05D003680 ORTHO05D004264 2.1e-14 84.3 113 41.6
MSTRG.3150 Avicennia marina HOM05D003680 ORTHO05D004264 2.7e-14 84.0 204 31.4
EL10Ac4g08567 Beta vulgaris HOM05D003680 ORTHO05D004264 2.7e-14 84.0 80 51.2
Carub.0003s0051 Capsella rubella HOM05D003680 ORTHO05D004264 2.7e-14 84.0 350 26.6
Cc07_g01830 Coffea canephora HOM05D003680 ORTHO05D004264 2.7e-14 84.0 165 35.2
Aqoxy1G03743 Aquilegia oxysepala HOM05D003680 ORTHO05D004264 3.5e-14 83.6 215 32.6
Eucgr.J02234 Eucalyptus grandis HOM05D003680 ORTHO05D004264 3.5e-14 83.6 108 41.7
ATR1158G006 Amborella trichopoda HOM05D003680 ORTHO05D004264 4.6e-14 83.2 119 43.7
Solyc12g035240.2 Solanum lycopersicum HOM05D003680 ORTHO05D004264 4.6e-14 83.2 78 52.6
AT3G01560 Arabidopsis thaliana HOM05D003680 ORTHO05D004264 6.0e-14 82.8 113 46.9
MSTRG.3151 Avicennia marina HOM05D003680 ORTHO05D004264 6.0e-14 82.8 80 52.5
CSS0037811 Camellia sinensis var. sinensis HOM05D003680 ORTHO05D004264 6.0e-14 82.8 412 23.5
Ciclev10014743m.g Citrus clementina HOM05D003680 ORTHO05D004264 6.0e-14 82.8 167 34.7
Glyma.19G004100 Glycine max HOM05D003680 ORTHO05D004264 6.0e-14 82.8 113 40.7
Oeu054618.2 Olea europaea HOM05D003680 ORTHO05D004264 6.0e-14 82.8 169 34.3
Sopen12g014830 Solanum pennellii HOM05D003680 ORTHO05D004264 6.0e-14 82.8 420 25.0
CiPaw.04G027800 Carya illinoinensis HOM05D003680 ORTHO05D004264 7.9e-14 82.4 440 24.5
DCAR_021716 Daucus carota HOM05D003680 ORTHO05D004264 7.9e-14 82.4 76 53.9
Gohir.D11G070800 Gossypium hirsutum HOM05D003680 ORTHO05D004264 7.9e-14 82.4 128 39.1
Gorai.007G076000 Gossypium raimondii HOM05D003680 ORTHO05D004264 7.9e-14 82.4 128 39.1
MD09G1028500 Malus domestica HOM05D003680 ORTHO05D004264 7.9e-14 82.4 194 30.4
Sc03g0007570 Simmondsia chinensis HOM05D003680 ORTHO05D004264 1.0e-13 82.0 143 38.5
CSS0042153 Camellia sinensis var. sinensis HOM05D003680 ORTHO05D004264 1.8e-13 81.3 140 36.4
CANSAT64G1511 Cannabis sativa HOM05D003680 ORTHO05D004264 1.8e-13 81.3 184 29.3
Dinv33451 Davidia involucrata HOM05D003680 ORTHO05D004264 2.3e-13 80.9 78 52.6
Prupe.3G290000 Prunus persica HOM05D003680 ORTHO05D004264 2.3e-13 80.9 112 40.2
AL3G10590 Arabidopsis lyrata HOM05D003680 ORTHO05D004264 3.0e-13 80.5 114 43.9
CiPaw.03G042200 Carya illinoinensis HOM05D003680 ORTHO05D004264 3.0e-13 80.5 97 47.4
Nitab4.5_0002682g0050 Nicotiana tabacum HOM05D003680 ORTHO05D004264 3.0e-13 80.5 425 23.1
PGR044G1290 Punica granatum HOM05D003680 ORTHO05D004264 3.0e-13 80.5 423 23.2
Ca_04157_v3 Cicer arietinum L. HOM05D003680 ORTHO05D004264 3.9e-13 80.1 78 52.6
HanXRQChr17g0548551 Helianthus annuus HOM05D003680 ORTHO05D004264 3.9e-13 80.1 405 25.7
Lj7A598G52 Lonicera japonica HOM05D003680 ORTHO05D004264 3.9e-13 80.1 81 49.4
Medtr6g004930 Medicago truncatula HOM05D003680 ORTHO05D004264 3.9e-13 80.1 111 42.3
Oeu006814.2 Olea europaea HOM05D003680 ORTHO05D004264 3.9e-13 80.1 102 45.1
Potri.001G348500 Populus trichocarpa HOM05D003680 ORTHO05D004264 3.9e-13 80.1 140 36.4
Glyma.05G004000 Glycine max HOM05D003680 ORTHO05D004264 5.1e-13 79.7 80 50.0
MD17G1030000 Malus domestica HOM05D003680 ORTHO05D004264 5.1e-13 79.7 111 40.5
Aqoxy3G02827 Aquilegia oxysepala HOM05D003680 ORTHO05D004264 6.7e-13 79.3 222 32.4
Sabra16G0228100 Salix brachista HOM05D003680 ORTHO05D004264 6.7e-13 79.3 78 52.6
A02p02610 Brassica napus HOM05D003680 ORTHO05D004264 8.7e-13 79.0 131 37.4
BraA02t05229Z Brassica rapa HOM05D003680 ORTHO05D004264 8.7e-13 79.0 131 37.4
Carub.0006s1272 Capsella rubella HOM05D003680 ORTHO05D004264 8.7e-13 79.0 416 25.0
CARHR075340 Cardamine hirsuta HOM05D003680 ORTHO05D004264 1.1e-12 78.6 85 48.2
BcaNung03147 Brassica carinata HOM05D003680 ORTHO05D004264 1.5e-12 78.2 90 46.7
THA.LOC104822398 Tarenaya hassleriana HOM05D003680 ORTHO05D004264 1.5e-12 78.2 77 51.9
Eucgr.K02812 Eucalyptus grandis HOM05D003680 ORTHO05D004264 1.9e-12 77.8 79 48.1
VMungo0464G0243 Vigna mungo HOM05D003680 ORTHO05D004264 1.9e-12 77.8 113 39.8
Aa31LG11G15310 Aethionema arabicum HOM05D003680 ORTHO05D004264 2.5e-12 77.4 162 33.3
Phvul.004G007500 Phaseolus vulgaris HOM05D003680 ORTHO05D004264 3.3e-12 77.0 114 39.5
Psat1g055600 Pisum sativum HOM05D003680 ORTHO05D004264 4.3e-12 76.6 78 48.7
TPR.G14068 Trifolium pratense HOM05D003680 ORTHO05D004264 7.4e-12 75.9 178 29.2
Lalb_Chr06g0175821 Lupinus albus HOM05D003680 ORTHO05D004264 9.6e-12 75.5 111 40.5
vmacro18275 Vaccinium macrocarpon HOM05D003680 ORTHO05D004264 2.1e-11 74.3 140 37.1
Actinidia35765 Actinidia chinensis HOM05D003680 ORTHO05D004264 3.7e-11 73.6 399 24.3
Sc12g0005110 Simmondsia chinensis HOM05D003680 ORTHO05D004264 3.7e-11 73.6 219 28.3
SGA_v2.0_scaffold135G34898 Striga asiatica HOM05D003655 ORTHO05D004065 3.7e-11 73.6 428 23.8
unitig_62.g23356 Utricularia gibba HOM05D001993 ORTHO05D004040 3.7e-11 73.6 106 41.5
C02p07090 Brassica napus HOM05D003680 ORTHO05D004264 4.8e-11 73.2 136 33.8
Os01g0169900 Oryza sativa ssp. japonica HOM05D003680 ORTHO05D004264 4.8e-11 73.2 116 37.1
Lj2g0009789 Lotus japonicus HOM05D003680 ORTHO05D004264 1.1e-10 72.0 79 50.6
Mapoly0092s0027 Marchantia polymorpha HOM05D003680 ORTHO05D004264 1.1e-10 72.0 82 47.6
Rhsim08G0051500 Rhododendron simsii HOM05D003680 ORTHO05D000229 1.4e-10 71.6 78 48.7
BolC2t06642H Brassica oleracea HOM05D003680 ORTHO05D004264 1.8e-10 71.2 136 33.1
Migut.H00085 Erythranthe guttata HOM05D003680 ORTHO05D004264 1.8e-10 71.2 142 35.2
SEGI_20908 Sequoiadendron giganteum HOM05D003680 ORTHO05D004264 1.8e-10 71.2 79 44.3
Zm00001eb122990 Zea mays HOM05D003680 ORTHO05D004264 2.4e-10 70.9 115 36.5
Lsat_1_v5_gn_0_32160 Lactuca sativa HOM05D003680 ORTHO05D004264 3.1e-10 70.5 394 23.1
Atru.chr9.2544 Acer truncatum HOM05D003680 ORTHO05D004264 6.9e-10 69.3 58 56.9
Zm00001eb336590 Zea mays HOM05D003680 ORTHO05D004264 6.9e-10 69.3 112 36.6
arahy.Tifrunner.gnm1.ann1.WP4DQS Arachis hypogaea HOM05D003680 ORTHO05D004264 4.5e-09 66.6 80 43.8
arahy.Tifrunner.gnm1.ann1.YJRC23 Arachis hypogaea HOM05D003680 ORTHO05D004264 4.5e-09 66.6 80 43.8
Os05g0169400 Oryza sativa ssp. japonica HOM05D003680 ORTHO05D004264 4.5e-09 66.6 112 37.5
AT5G14540 Arabidopsis thaliana HOM05D003680 ORTHO05D004264 5.8e-09 66.2 403 22.6
Pp3c11_23810 Physcomitrium patens HOM05D003680 ORTHO05D004264 5.8e-09 66.2 83 42.2
SMO266G0040 Selaginella moellendorffii HOM05D003680 ORTHO05D004264 5.8e-09 66.2 76 44.7
CARHR198770 Cardamine hirsuta HOM05D003680 ORTHO05D004264 1.1e-07 62.0 78 42.3
Pp3c8_19720 Physcomitrium patens HOM05D003680 ORTHO05D004264 1.9e-07 61.2 68 45.6
Atru.chr6.2363 Acer truncatum HOM05D003680 ORTHO05D004264 9.3e-07 58.9 110 30.0
COL.COLO4_30185 Corchorus olitorius HOM05D003471 ORTHO05D004079 2.7e-06 57.4 314 22.0
Pp3c24_13440 Physcomitrium patens HOM05D003680 ORTHO05D004264 2.7e-06 57.4 70 47.1


User provided reference genes

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