Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA232G2571 Erigeron canadensis HOM05D006824 ORTHO05D008779 6.0e-183 644.0 326 100.0
HanXRQChr11g0323941 Helianthus annuus HOM05D006824 ORTHO05D008779 1.4e-107 393.7 231 82.7
Lsat_1_v5_gn_9_48761 Lactuca sativa HOM05D006824 ORTHO05D008779 9.5e-104 380.9 207 84.1
Lj8A196G47 Lonicera japonica HOM05D006824 ORTHO05D008779 4.1e-91 339.0 223 67.7
Oeu010150.1 Olea europaea HOM05D006824 ORTHO05D008779 7.1e-91 338.2 204 74.0
vmacro06000 Vaccinium macrocarpon HOM05D006824 ORTHO05D008779 2.1e-90 336.7 214 71.5
Haze_04530 Corylus avellana HOM05D006824 ORTHO05D008779 4.6e-90 335.5 210 72.4
PGSC0003DMG400023472 Solanum tuberosum HOM05D006824 ORTHO05D008779 4.6e-90 335.5 224 68.3
GSVIVG01019144001 Vitis vinifera HOM05D006824 ORTHO05D008779 1.0e-89 334.3 210 72.9
Rhsim03G0265800 Rhododendron simsii HOM05D006824 ORTHO05D008779 1.7e-89 333.6 225 67.6
CAN.G694.18 Capsicum annuum HOM05D006824 ORTHO05D008779 5.1e-89 332.0 226 66.8
PGR031G0982 Punica granatum HOM05D006824 ORTHO05D008779 5.1e-89 332.0 226 65.5
CiPaw.08G117600 Carya illinoinensis HOM05D006824 ORTHO05D008779 8.6e-89 331.3 212 68.9
Nitab4.5_0005183g0030 Nicotiana tabacum HOM05D006824 ORTHO05D008779 1.9e-88 330.1 221 67.9
Atru.chr12.2132 Acer truncatum HOM05D006824 ORTHO05D008779 4.3e-88 328.9 222 66.7
Sopen05g034220 Solanum pennellii HOM05D006824 ORTHO05D008779 4.3e-88 328.9 220 68.2
AUR62006674 Chenopodium quinoa HOM05D006824 ORTHO05D008779 7.3e-88 328.2 208 68.3
Prupe.6G359400 Prunus persica HOM05D006824 ORTHO05D008779 7.3e-88 328.2 223 68.2
Actinidia38928 Actinidia chinensis HOM05D006824 ORTHO05D008779 1.6e-87 327.0 220 66.8
CSS0012922 Camellia sinensis var. sinensis HOM05D006824 ORTHO05D008779 1.6e-87 327.0 210 71.0
CSS0029100 Camellia sinensis var. sinensis HOM05D006824 ORTHO05D008779 1.6e-87 327.0 210 71.0
TPR.G28449 Trifolium pratense HOM05D006824 ORTHO05D008779 1.6e-87 327.0 220 67.3
MD12G1258900 Malus domestica HOM05D006824 ORTHO05D008779 2.8e-87 326.2 216 67.1
Potri.010G143000 Populus trichocarpa HOM05D006824 ORTHO05D008779 4.7e-87 325.5 207 69.1
Dinv04348 Davidia involucrata HOM05D006824 ORTHO05D008779 8.1e-87 324.7 226 65.5
EL10Ac4g09985 Beta vulgaris HOM05D006824 ORTHO05D008779 1.1e-86 324.3 226 67.3
RcHm_v2.0_Chr3g0448181 Rosa chinensis HOM05D006824 ORTHO05D008779 1.1e-86 324.3 208 70.7
Lalb_Chr19g0126751 Lupinus albus HOM05D006824 ORTHO05D008779 1.4e-86 323.9 203 71.4
CANSAT54G2581 Cannabis sativa HOM05D006824 ORTHO05D008779 2.4e-86 323.2 199 72.9
AUR62000332 Chenopodium quinoa HOM05D006824 ORTHO05D008779 2.4e-86 323.2 217 66.4
Phvul.008G055700 Phaseolus vulgaris HOM05D006824 ORTHO05D008779 2.4e-86 323.2 211 70.1
Glyma.09G252100 Glycine max HOM05D006824 ORTHO05D008779 3.1e-86 322.8 217 67.7
Psat3g104840 Pisum sativum HOM05D006824 ORTHO05D008779 3.1e-86 322.8 232 64.2
FAN05G0802 Fragaria x ananassa HOM05D006824 ORTHO05D008779 4.0e-86 322.4 201 72.1
Medtr7g079530 Medicago truncatula HOM05D006824 ORTHO05D008779 5.2e-86 322.0 233 63.5
Sabra10G0110900 Salix brachista HOM05D006824 ORTHO05D008779 8.9e-86 321.2 200 70.5
Thecc.05G206500 Theobroma cacao HOM05D006824 ORTHO05D008779 1.2e-85 320.9 213 67.1
Glyma.18G240500 Glycine max HOM05D006824 ORTHO05D008779 1.5e-85 320.5 220 67.3
VMungo1383G3541 Vigna mungo HOM05D006824 ORTHO05D008779 1.5e-85 320.5 217 68.7
DCAR_005505 Daucus carota HOM05D006824 ORTHO05D008779 2.0e-85 320.1 204 68.6
Cc09_g03430 Coffea canephora HOM05D006824 ORTHO05D008779 2.6e-85 319.7 226 65.0
PSO170G6807 Papaver somniferum HOM05D006824 ORTHO05D008779 3.4e-85 319.3 229 62.4
Gorai.003G050700 Gossypium raimondii HOM05D006824 ORTHO05D008779 1.3e-84 317.4 204 67.6
Ca_07965_v3 Cicer arietinum L. HOM05D006824 ORTHO05D008779 2.2e-84 316.6 225 64.4
SGA_v2.0_scaffold13G06472 Striga asiatica HOM05D006824 ORTHO05D008779 2.2e-84 316.6 216 66.7
Gohir.A02G138800 Gossypium hirsutum HOM05D006824 ORTHO05D008779 2.9e-84 316.2 204 67.2
Duzib128G1599 Durio zibethinus HOM05D006824 ORTHO05D008779 4.9e-84 315.5 229 62.0
ClCG11G010940 Citrullus lanatus HOM05D006824 ORTHO05D008779 8.4e-84 314.7 225 65.3
TWI14G0776 Tripterygium wilfordii HOM05D006824 ORTHO05D008779 8.4e-84 314.7 212 67.5
A07p26320 Brassica napus HOM05D006824 ORTHO05D008779 1.1e-83 314.3 213 69.5
COL.COLO4_19831 Corchorus olitorius HOM05D006824 ORTHO05D008779 1.4e-83 313.9 213 66.2
BraA07t30276Z Brassica rapa HOM05D006824 ORTHO05D008779 1.9e-83 313.5 201 72.1
Eucgr.H01379 Eucalyptus grandis HOM05D006824 ORTHO05D008779 2.4e-83 313.2 211 68.2
SalBow3G1586 Salvia bowleyana HOM05D006824 ORTHO05D008779 3.2e-83 312.8 262 59.2
C06p28710 Brassica napus HOM05D006824 ORTHO05D008779 4.1e-83 312.4 201 71.6
CsaV3_2G009540 Cucumis sativus L. HOM05D006824 ORTHO05D008779 4.1e-83 312.4 225 65.8
TAR362G0347 Trochodendron aralioides HOM05D006824 ORTHO05D008779 5.4e-83 312.0 195 71.3
Manes.14G158930 Manihot esculenta HOM05D006824 ORTHO05D008779 6.0e-82 308.5 234 60.3
arahy.Tifrunner.gnm1.ann1.3Y20MY Arachis hypogaea HOM05D006824 ORTHO05D008779 7.8e-82 308.1 217 66.4
Sed0011929 Sechium edule HOM05D006824 ORTHO05D008779 1.0e-81 307.8 217 65.4
Sp5g35980 Schrenkiella parvula HOM05D006824 ORTHO05D008779 1.3e-81 307.4 209 68.9
arahy.Tifrunner.gnm1.ann1.8HY0WZ Arachis hypogaea HOM05D006824 ORTHO05D008779 1.7e-81 307.0 217 65.9
Aa31LG4G40 Aethionema arabicum HOM05D006824 ORTHO05D008779 2.3e-81 306.6 199 69.8
Migut.F01795 Erythranthe guttata HOM05D006824 ORTHO05D008779 3.0e-81 306.2 211 64.9
THA.LOC104813550 Tarenaya hassleriana HOM05D006824 ORTHO05D008779 3.0e-81 306.2 197 68.0
CARHR049030 Cardamine hirsuta HOM05D006824 ORTHO05D008779 5.1e-81 305.4 197 70.6
Aqoxy5G00154 Aquilegia oxysepala HOM05D006824 ORTHO05D008779 2.5e-80 303.1 227 59.9
AL2G41760 Arabidopsis lyrata HOM05D006824 ORTHO05D008779 2.5e-80 303.1 201 69.7
BolC6t38040H Brassica oleracea HOM05D006824 ORTHO05D008779 7.3e-80 301.6 224 64.3
Thhalv10019052m.g Eutrema salsugineum HOM05D006824 ORTHO05D008779 7.3e-80 301.6 197 69.5
FAN14G1847 Fragaria x ananassa HOM05D006824 ORTHO05D008779 3.6e-79 299.3 222 64.0
FAN02G3690 Fragaria x ananassa HOM05D006824 ORTHO05D008779 8.1e-79 298.1 209 65.6
Carub.0002s2772 Capsella rubella HOM05D006824 ORTHO05D008779 3.1e-78 296.2 197 69.0
Lj1g0017863 Lotus japonicus HOM05D006824 ORTHO05D008779 3.4e-77 292.7 177 71.8
CDE09G0666 Ceratophyllum demersum HOM05D006824 ORTHO05D008779 4.4e-77 292.4 204 65.7
CDE02G0053 Ceratophyllum demersum HOM05D006824 ORTHO05D008779 4.9e-76 288.9 205 65.4
Ciclev10012732m.g Citrus clementina HOM05D006824 ORTHO05D008779 6.4e-76 288.5 163 77.3
AT1G79790 Arabidopsis thaliana HOM05D006824 ORTHO05D008779 5.4e-75 285.4 222 61.3
HPP92_009935 Vanilla planifolia HOM05D006824 ORTHO05D008779 8.7e-73 278.1 173 71.7
Ah.06g195550 Amaranthus hybridus HOM05D006824 ORTHO05D008779 2.5e-72 276.6 221 62.0
Cpa.g.sc123.9 Carica papaya HOM05D006824 ORTHO05D008779 3.6e-71 272.7 161 73.9
MELO3C025302.2 Cucumis melo HOM05D006824 ORTHO05D008779 3.1e-70 269.6 192 65.1
Nn1g09799 Nelumbo nucifera HOM05D006824 ORTHO05D008779 3.1e-70 269.6 185 65.4
MELO3C008753.2 Cucumis melo HOM05D006824 ORTHO05D008779 4.0e-70 269.2 192 65.6
Pp3c3_9990 Physcomitrium patens HOM05D006824 ORTHO05D008779 2.4e-67 260.0 202 58.4
AagrBONN_evm.TU.Sc2ySwM_344.3559 Anthoceros agrestis HOM05D006824 ORTHO05D008779 4.2e-67 259.2 197 59.9
Nitab4.5_0009285g0020 Nicotiana tabacum HOM05D006824 ORTHO05D008779 2.1e-66 256.9 181 68.0
SMO361G0474 Selaginella moellendorffii HOM05D006824 ORTHO05D008779 2.1e-66 256.9 210 58.6
Mapoly0002s0020 Marchantia polymorpha HOM05D006824 ORTHO05D008779 6.7e-65 251.9 200 56.5
MBI08_g02107_MAGBIO Magnolia biondii HOM05D006824 ORTHO05D008779 2.4e-62 243.4 173 64.2
CBR_g54655 Chara braunii HOM05D006824 ORTHO05D008779 9.0e-62 241.5 193 56.5
Hma1.2p1_0171F.1_g075760 Hydrangea macrophylla HOM05D006824 ORTHO05D008779 1.7e-60 237.3 134 76.9
FvH4_6g00710 Fragaria vesca HOM05D006824 ORTHO05D008779 2.9e-60 236.5 141 75.9
Gohir.D03G049300 Gossypium hirsutum HOM05D006824 ORTHO05D008779 6.4e-60 235.3 144 70.8
SalBow3G1143 Salvia bowleyana HOM05D006824 ORTHO05D008779 6.0e-58 228.8 168 62.5
Zm00001eb169290 Zea mays HOM05D006824 ORTHO05D008779 1.5e-56 224.2 154 66.2
Cre13.g563200 Chlamydomonas reinhardtii HOM05D006824 ORTHO05D008779 1.5e-48 197.6 203 48.8
MD04G1242100 Malus domestica HOM05D006824 ORTHO05D008779 1.6e-47 194.1 123 69.1
Hund07329 Selenicereus undatus HOM05D006824 ORTHO05D008779 4.5e-45 186.0 210 46.7
QL01p046721 Quercus lobata HOM05D006824 ORTHO05D008779 1.0e-44 184.9 128 65.6
Nitab4.5_0008294g0020 Nicotiana tabacum HOM05D006824 ORTHO05D008779 7.2e-43 178.7 231 44.2
arahy.Tifrunner.gnm1.ann1.EIZA4A Arachis hypogaea HOM05D006824 ORTHO05D008779 4.3e-40 169.5 102 69.6
PRCOL_00006210 Prasinoderma coloniale HOM05D006824 ORTHO05D008779 1.4e-38 164.5 182 41.8
arahy.Tifrunner.gnm1.ann1.JEI8NT Arachis hypogaea HOM05D006824 ORTHO05D008779 7.2e-35 152.1 93 66.7
Solyc05g055820.3 Solanum lycopersicum HOM05D006824 ORTHO05D008779 2.4e-30 137.1 93 63.4
FAN09G4644 Fragaria x ananassa HOM05D006824 ORTHO05D008779 2.2e-28 130.6 80 71.2
CARHR074720 Cardamine hirsuta HOM05D006824 ORTHO05D008779 1.4e-22 111.3 87 59.8
Psat3g104160 Pisum sativum HOM05D006824 ORTHO05D008779 1.7e-20 104.4 60 80.0
SEGI_14412 Sequoiadendron giganteum HOM05D006824 ORTHO05D008779 1.2e-18 98.2 54 81.5
MD04G1242000 Malus domestica HOM05D006824 ORTHO05D008779 1.6e-18 97.8 71 59.2
arahy.Tifrunner.gnm1.ann1.X7EDXL Arachis hypogaea HOM05D006824 ORTHO05D021501 1.3e-15 88.2 54 75.9
ATR0824G111 Amborella trichopoda HOM05D006824 ORTHO05D008779 1.7e-15 87.8 73 56.2
FAN09G1422 Fragaria x ananassa HOM05D001170 ORTHO05D002759 2.2e-12 77.4 54 59.3
ATR0263G001 Amborella trichopoda HOM05D006824 ORTHO05D008779 5.0e-12 76.3 67 53.7
Oeu040492.1 Olea europaea HOM05D003440 ORTHO05D003953 1.6e-10 71.2 66 60.6
SEGI_33071 Sequoiadendron giganteum HOM05D006824 ORTHO05D008779 1.6e-10 71.2 66 45.5
arahy.Tifrunner.gnm1.ann1.2JVF5K Arachis hypogaea HOM05D001175 ORTHO05D021501 2.7e-10 70.5 91 45.1
arahy.Tifrunner.gnm1.ann1.96LZZJ Arachis hypogaea HOM05D006824 ORTHO05D021501 2.7e-10 70.5 91 45.1
arahy.Tifrunner.gnm1.ann1.DM3ST4 Arachis hypogaea HOM05D006824 ORTHO05D021501 2.7e-10 70.5 91 45.1
DCAR_007995 Daucus carota HOM05D003440 ORTHO05D003953 2.7e-10 70.5 67 58.2
Cc09_g03520 Coffea canephora HOM05D003440 ORTHO05D003953 4.7e-10 69.7 69 60.9
arahy.Tifrunner.gnm1.ann1.0X0W56 Arachis hypogaea HOM05D006824 ORTHO05D021501 6.1e-10 69.3 45 66.7
arahy.Tifrunner.gnm1.ann1.LN2II4 Arachis hypogaea HOM05D006661 ORTHO05D021501 8.0e-10 68.9 90 44.4
HanXRQChr16g0512031 Helianthus annuus HOM05D003440 ORTHO05D003953 1.8e-09 67.8 73 56.2
Nitab4.5_0012961g0010 Nicotiana tabacum HOM05D003440 ORTHO05D003953 8.8e-09 65.5 69 52.2
Nitab4.5_0001653g0080 Nicotiana tabacum HOM05D003440 ORTHO05D003953 2.0e-08 64.3 69 52.2
PGSC0003DMG400016235 Solanum tuberosum HOM05D003440 ORTHO05D003953 2.0e-08 64.3 70 51.4
Solyc11g008910.2 Solanum lycopersicum HOM05D003440 ORTHO05D003953 3.4e-08 63.5 69 52.2
CiPaw.07G079500 Carya illinoinensis HOM05D003440 ORTHO05D003953 4.4e-08 63.2 64 51.6
Dinv06976 Davidia involucrata HOM05D003440 ORTHO05D003953 7.5e-08 62.4 76 51.3
Migut.F02138 Erythranthe guttata HOM05D003440 ORTHO05D003953 7.5e-08 62.4 74 52.7
Manes.09G184900 Manihot esculenta HOM05D003440 ORTHO05D003953 1.3e-07 61.6 72 50.0
Sopen11g004700 Solanum pennellii HOM05D003440 ORTHO05D003953 2.8e-07 60.5 71 49.3
PGR031G2316 Punica granatum HOM05D003440 ORTHO05D003953 3.7e-07 60.1 70 51.4
Haze_04543 Corylus avellana HOM05D003440 ORTHO05D003953 6.3e-07 59.3 68 48.5
Cpa.g.sc32.161 Carica papaya HOM05D006824 ORTHO05D008779 8.3e-07 58.9 33 75.8
Manes.08G104200 Manihot esculenta HOM05D003440 ORTHO05D003953 1.4e-06 58.2 41 63.4
Nn1g06756 Nelumbo nucifera HOM05D001660 ORTHO05D003277 1.8e-06 57.8 96 35.4
QL01p048843 Quercus lobata HOM05D003440 ORTHO05D003953 4.1e-06 56.6 72 45.8
QL04p042289 Quercus lobata HOM05D003440 ORTHO05D003953 4.1e-06 56.6 68 45.6
ECA236G2696 Erigeron canadensis HOM05D006195 ORTHO05D007710 5.4e-06 56.2 94 36.2
Lalb_Chr03g0038421 Lupinus albus HOM05D003440 ORTHO05D003953 5.4e-06 56.2 36 66.7
arahy.Tifrunner.gnm1.ann1.LK4K8I Arachis hypogaea HOM05D006688 ORTHO05D008550 7.0e-06 55.8 58 41.4
COL.COLO4_31583 Corchorus olitorius HOM05D001660 ORTHO05D003277 9.1e-06 55.5 98 36.7


User provided reference genes

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