Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA232G2533 Erigeron canadensis HOM05D004108 ORTHO05D004849 2.7e-76 288.5 139 100.0
Lsat_1_v5_gn_4_117601 Lactuca sativa HOM05D004108 ORTHO05D004849 2.3e-46 189.1 126 77.0
HanXRQChr16g0501561 Helianthus annuus HOM05D004108 ORTHO05D004849 4.4e-34 148.3 121 66.9
PGSC0003DMG400003688 Solanum tuberosum HOM05D004108 ORTHO05D004849 3.0e-22 109.0 143 43.4
Sopen04g034130 Solanum pennellii HOM05D004108 ORTHO05D004849 6.6e-22 107.8 143 43.4
Nitab4.5_0002224g0100 Nicotiana tabacum HOM05D004108 ORTHO05D004849 8.6e-22 107.5 148 43.9
Solyc04g080540.2 Solanum lycopersicum HOM05D004108 ORTHO05D004849 1.9e-21 106.3 143 42.7
HanXRQChr02g0051071 Helianthus annuus HOM05D004108 ORTHO05D017056 3.3e-21 105.5 90 68.9
Glyma.04G030900 Glycine max HOM05D004108 ORTHO05D004849 3.1e-19 99.0 151 46.4
Lsat_1_v5_gn_5_27881 Lactuca sativa HOM05D004108 ORTHO05D004849 9.9e-18 94.0 150 40.0
Sabra02G0027700 Salix brachista HOM05D004108 ORTHO05D004849 9.9e-18 94.0 125 48.8
Glyma.06G031000 Glycine max HOM05D004108 ORTHO05D004849 1.3e-17 93.6 151 45.0
HanXRQChr05g0156841 Helianthus annuus HOM05D004108 ORTHO05D004849 1.3e-17 93.6 140 45.7
MSTRG.24284 Avicennia marina HOM05D004108 ORTHO05D004849 1.7e-17 93.2 127 45.7
Psat5g012160 Pisum sativum HOM05D004108 ORTHO05D004849 1.7e-17 93.2 141 45.4
Cc10_g02670 Coffea canephora HOM05D004108 ORTHO05D004849 2.2e-17 92.8 134 44.8
ECA246G2053 Erigeron canadensis HOM05D004108 ORTHO05D004849 2.9e-17 92.4 143 38.5
Manes.18G023000 Manihot esculenta HOM05D004108 ORTHO05D004849 3.8e-17 92.0 135 45.2
MSTRG.22304 Avicennia marina HOM05D004108 ORTHO05D004849 4.9e-17 91.7 134 45.5
Duzib093G0346 Durio zibethinus HOM05D004108 ORTHO05D004849 4.9e-17 91.7 135 45.9
Potri.005G228600 Populus trichocarpa HOM05D004108 ORTHO05D004849 6.4e-17 91.3 134 44.8
CANSAT25G0460 Cannabis sativa HOM05D004108 ORTHO05D004849 1.4e-16 90.1 136 44.9
Sabra05G0176500 Salix brachista HOM05D004108 ORTHO05D004849 1.4e-16 90.1 133 44.4
Thecc.08G029500 Theobroma cacao HOM05D004108 ORTHO05D004849 1.4e-16 90.1 133 43.6
COL.COLO4_26289 Corchorus olitorius HOM05D004108 ORTHO05D004849 1.9e-16 89.7 136 43.4
Lalb_Chr08g0245901 Lupinus albus HOM05D004108 ORTHO05D004849 2.4e-16 89.4 141 43.3
VMungo0647G0771 Vigna mungo HOM05D004108 ORTHO05D004849 2.4e-16 89.4 154 41.6
SGA_v2.0_scaffold326G48731 Striga asiatica HOM05D004108 ORTHO05D004849 3.2e-16 89.0 122 41.0
VMungo1309G0255 Vigna mungo HOM05D004108 ORTHO05D004849 4.2e-16 88.6 141 44.7
Lj1g0012803 Lotus japonicus HOM05D004108 ORTHO05D004849 5.4e-16 88.2 151 42.4
CSS0043508 Camellia sinensis var. sinensis HOM05D004108 ORTHO05D004849 1.2e-15 87.0 139 41.7
CSS0044578 Camellia sinensis var. sinensis HOM05D004108 ORTHO05D004849 1.2e-15 87.0 139 41.7
Ciclev10002766m.g Citrus clementina HOM05D004108 ORTHO05D004849 1.2e-15 87.0 136 44.1
Duzib116G0345 Durio zibethinus HOM05D004108 ORTHO05D004849 1.2e-15 87.0 135 45.9
Gohir.A05G258800 Gossypium hirsutum HOM05D004108 ORTHO05D004849 1.2e-15 87.0 141 41.8
Glyma.06G031100 Glycine max HOM05D004108 ORTHO05D004849 1.6e-15 86.7 146 44.5
Sed0010517 Sechium edule HOM05D004108 ORTHO05D004849 1.6e-15 86.7 127 44.1
Gohir.A05G192800 Gossypium hirsutum HOM05D004108 ORTHO05D004849 2.1e-15 86.3 135 41.5
CANSAT25G1850 Cannabis sativa HOM05D004108 ORTHO05D004849 2.7e-15 85.9 157 38.2
Gohir.D05G196000 Gossypium hirsutum HOM05D004108 ORTHO05D004849 2.7e-15 85.9 135 41.5
Gorai.009G200900 Gossypium raimondii HOM05D004108 ORTHO05D004849 2.7e-15 85.9 135 41.5
Medtr3g111970 Medicago truncatula HOM05D004108 ORTHO05D004849 2.7e-15 85.9 145 42.1
Gorai.009G272400 Gossypium raimondii HOM05D004108 ORTHO05D004849 3.5e-15 85.5 151 38.4
Phvul.001G013200 Phaseolus vulgaris HOM05D004108 ORTHO05D004849 3.5e-15 85.5 131 44.3
Potri.002G034500 Populus trichocarpa HOM05D004108 ORTHO05D004849 3.5e-15 85.5 128 42.2
Gohir.D01G103300 Gossypium hirsutum HOM05D004108 ORTHO05D004849 4.6e-15 85.1 127 42.5
Gohir.D05G260600 Gossypium hirsutum HOM05D004108 ORTHO05D004849 4.6e-15 85.1 141 41.1
QL02p009008 Quercus lobata HOM05D004108 ORTHO05D004849 4.6e-15 85.1 130 43.8
TPR.G12369 Trifolium pratense HOM05D004108 ORTHO05D004849 4.6e-15 85.1 157 39.5
Actinidia22531 Actinidia chinensis HOM05D004108 ORTHO05D004849 6.0e-15 84.7 134 40.3
Glyma.17G251800 Glycine max HOM05D004108 ORTHO05D004849 6.0e-15 84.7 152 41.4
Gorai.002G127100 Gossypium raimondii HOM05D004108 ORTHO05D004849 7.8e-15 84.3 127 42.5
Medtr1g022395 Medicago truncatula HOM05D004108 ORTHO05D004849 7.8e-15 84.3 140 39.3
TWI56G1092 Tripterygium wilfordii HOM05D004108 ORTHO05D004849 1.0e-14 84.0 138 42.0
Rhsim06G0031200 Rhododendron simsii HOM05D004108 ORTHO05D004849 1.3e-14 83.6 134 38.8
Ca_13362_v3 Cicer arietinum L. HOM05D004108 ORTHO05D004849 1.7e-14 83.2 152 40.1
CiPaw.15G080700 Carya illinoinensis HOM05D004108 ORTHO05D004849 2.3e-14 82.8 131 42.0
Gohir.A01G114900 Gossypium hirsutum HOM05D004108 ORTHO05D004849 2.3e-14 82.8 127 41.7
Ca_15505_v3 Cicer arietinum L. HOM05D004108 ORTHO05D004849 3.0e-14 82.4 126 42.1
TPR.G20143 Trifolium pratense HOM05D004108 ORTHO05D004849 3.9e-14 82.0 151 40.4
Cfa018174 Carpinus fangiana HOM05D004108 ORTHO05D004849 5.1e-14 81.6 133 39.8
Eucgr.F01582 Eucalyptus grandis HOM05D004108 ORTHO05D004849 5.1e-14 81.6 126 41.3
Migut.N00486 Erythranthe guttata HOM05D004108 ORTHO05D004849 6.6e-14 81.3 123 40.7
Oeu007023.1 Olea europaea HOM05D004108 ORTHO05D004849 1.1e-13 80.5 144 38.2
Lalb_Chr14g0369381 Lupinus albus HOM05D004108 ORTHO05D004849 1.5e-13 80.1 128 43.8
CsaV3_3G045320 Cucumis sativus L. HOM05D004108 ORTHO05D004849 1.9e-13 79.7 131 38.9
AUR62003937 Chenopodium quinoa HOM05D004108 ORTHO05D004849 2.5e-13 79.3 135 39.3
AUR62014478 Chenopodium quinoa HOM05D004108 ORTHO05D004849 2.5e-13 79.3 135 39.3
Psat6g008240 Pisum sativum HOM05D004108 ORTHO05D004849 2.5e-13 79.3 153 39.9
unitig_899.g15617 Utricularia gibba HOM05D004108 ORTHO05D004849 2.5e-13 79.3 128 41.4
MELO3C003817.2 Cucumis melo HOM05D004108 ORTHO05D004849 4.3e-13 78.6 131 38.9
Dinv36099 Davidia involucrata HOM05D004108 ORTHO05D004849 4.3e-13 78.6 109 46.8
MD08G1029700 Malus domestica HOM05D004108 ORTHO05D004849 4.3e-13 78.6 126 37.3
PGR083G0993 Punica granatum HOM05D004108 ORTHO05D004849 4.3e-13 78.6 130 40.8
arahy.Tifrunner.gnm1.ann1.9Q97AW Arachis hypogaea HOM05D004108 ORTHO05D004849 7.3e-13 77.8 122 36.9
arahy.Tifrunner.gnm1.ann1.FG8SZ8 Arachis hypogaea HOM05D004108 ORTHO05D004849 1.3e-12 77.0 122 36.1
Phvul.009G058900 Phaseolus vulgaris HOM05D004108 ORTHO05D004849 1.6e-12 76.6 156 37.8
Sed0024175 Sechium edule HOM05D004108 ORTHO05D004849 1.6e-12 76.6 150 39.3
GSVIVG01009730001 Vitis vinifera HOM05D004108 ORTHO05D004849 1.6e-12 76.6 148 38.5
ATR0568G230 Amborella trichopoda HOM05D004108 ORTHO05D004849 2.1e-12 76.3 122 38.5
FAN27G1128 Fragaria x ananassa HOM05D004108 ORTHO05D004849 2.1e-12 76.3 149 35.6
MBI18_g38882_MAGBIO Magnolia biondii HOM05D004108 ORTHO05D004849 2.1e-12 76.3 131 39.7
THA.LOC104811375 Tarenaya hassleriana HOM05D004108 ORTHO05D004849 2.1e-12 76.3 126 38.9
RcHm_v2.0_Chr6g0301271 Rosa chinensis HOM05D004108 ORTHO05D004849 2.8e-12 75.9 138 34.1
Hma1.2p1_0203F.1_g086230 Hydrangea macrophylla HOM05D004108 ORTHO05D004849 3.6e-12 75.5 134 40.3
CARHR020100 Cardamine hirsuta HOM05D004108 ORTHO05D004849 4.8e-12 75.1 120 43.3
Glyma.14G073200 Glycine max HOM05D004108 ORTHO05D004849 4.8e-12 75.1 131 40.5
DCAR_019539 Daucus carota HOM05D001676 ORTHO05D001539 6.2e-12 74.7 143 39.2
Lj5g0010725 Lotus japonicus HOM05D004108 ORTHO05D004849 6.2e-12 74.7 132 39.4
Sp1g17400 Schrenkiella parvula HOM05D004108 ORTHO05D004849 6.2e-12 74.7 120 42.5
Carub.0001s1910 Capsella rubella HOM05D004108 ORTHO05D004849 1.1e-11 73.9 127 39.4
Cpa.g.sc31.39 Carica papaya HOM05D004108 ORTHO05D004849 1.4e-11 73.6 106 44.3
AT1G19530 Arabidopsis thaliana HOM05D004108 ORTHO05D004849 1.8e-11 73.2 120 39.2
Aqoxy5G01593 Aquilegia oxysepala HOM05D004108 ORTHO05D004849 2.4e-11 72.8 141 34.0
EL10Ac1g00610 Beta vulgaris HOM05D004108 ORTHO05D004849 2.4e-11 72.8 134 38.8
Rhsim07G0240700 Rhododendron simsii HOM05D004108 ORTHO05D004849 2.4e-11 72.8 127 33.1
RhsimUnG0051600 Rhododendron simsii HOM05D004108 ORTHO05D004849 2.4e-11 72.8 127 33.1
SEGI_02312 Sequoiadendron giganteum HOM05D004108 ORTHO05D004849 2.4e-11 72.8 143 39.2
Sc15g0007040 Simmondsia chinensis HOM05D004108 ORTHO05D004849 4.0e-11 72.0 127 40.9
FvH4_2g39630 Fragaria vesca HOM05D004108 ORTHO05D004849 5.3e-11 71.6 148 35.8
AL1G32280 Arabidopsis lyrata HOM05D004108 ORTHO05D004849 6.9e-11 71.2 124 37.1
FAN15G0289 Fragaria x ananassa HOM05D004108 ORTHO05D004849 6.9e-11 71.2 149 34.2
PSO675G8146 Papaver somniferum HOM05D004108 ORTHO05D004849 9.0e-11 70.9 142 37.3
AagrBONN_evm.TU.Sc2ySwM_344.1816 Anthoceros agrestis HOM05D004108 ORTHO05D004849 1.2e-10 70.5 154 33.1
Aqoxy3G01079 Aquilegia oxysepala HOM05D004108 ORTHO05D004849 1.2e-10 70.5 123 36.6
C05p18030 Brassica napus HOM05D004108 ORTHO05D004849 1.2e-10 70.5 139 38.1
SEGI_15325 Sequoiadendron giganteum HOM05D004108 ORTHO05D004849 1.2e-10 70.5 141 36.2
BcaC05g25839 Brassica carinata HOM05D004108 ORTHO05D004849 1.5e-10 70.1 120 39.2
A06p15710 Brassica napus HOM05D004108 ORTHO05D004849 1.5e-10 70.1 120 39.2
BolC5t30510H Brassica oleracea HOM05D004108 ORTHO05D004849 1.5e-10 70.1 120 39.2
BraA06t24680Z Brassica rapa HOM05D004108 ORTHO05D004849 1.5e-10 70.1 120 39.2
MBI10_g18267_MAGBIO Magnolia biondii HOM05D004108 ORTHO05D004849 1.5e-10 70.1 130 33.8
TAR381G0780 Trochodendron aralioides HOM05D004108 ORTHO05D004849 1.5e-10 70.1 116 40.5
BcaB07g31980 Brassica carinata HOM05D004108 ORTHO05D004849 2.0e-10 69.7 120 39.2
Prupe.1G377400 Prunus persica HOM05D004108 ORTHO05D004849 2.0e-10 69.7 127 36.2
Thhalv10009139m.g Eutrema salsugineum HOM05D004108 ORTHO05D004849 2.6e-10 69.3 120 37.5
PSO541G2330 Papaver somniferum HOM05D004108 ORTHO05D004849 3.4e-10 68.9 142 37.3
Hund26890 Selenicereus undatus HOM05D004108 ORTHO05D004849 5.8e-10 68.2 130 34.6
Hund29908 Selenicereus undatus HOM05D004108 ORTHO05D004849 5.8e-10 68.2 130 34.6
ClCG08G014950 Citrullus lanatus HOM05D004108 ORTHO05D004849 9.9e-10 67.4 117 41.0
FAN20G2373 Fragaria x ananassa HOM05D004108 ORTHO05D004849 9.9e-10 67.4 155 31.6
Atru.chr13.446 Acer truncatum HOM05D004108 ORTHO05D004849 1.3e-09 67.0 133 36.1
CDE11G1036 Ceratophyllum demersum HOM05D004108 ORTHO05D004849 1.7e-09 66.6 128 35.2
Pp3c16_7660 Physcomitrium patens HOM05D004108 ORTHO05D004849 1.7e-09 66.6 126 33.3
Aa31LG7G4180 Aethionema arabicum HOM05D004108 ORTHO05D004849 2.2e-09 66.2 125 38.4
Haze_17929 Corylus avellana HOM05D004108 ORTHO05D004849 2.2e-09 66.2 116 40.5
MELO3C010952.2 Cucumis melo HOM05D004108 ORTHO05D004849 3.8e-09 65.5 116 43.1
HPP92_003110 Vanilla planifolia HOM05D004108 ORTHO05D004849 4.9e-09 65.1 130 34.6
Peaxi162Scf00303g00058 Petunia axillaris HOM05D004108 ORTHO05D004849 8.4e-09 64.3 116 38.8
CsaV3_2G028830 Cucumis sativus L. HOM05D004108 ORTHO05D004849 1.4e-08 63.5 117 41.9
Mapoly0152s0035 Marchantia polymorpha HOM05D004108 ORTHO05D004849 1.9e-08 63.2 140 32.1
Os03g0826800 Oryza sativa ssp. japonica HOM05D004108 ORTHO05D004849 1.9e-08 63.2 145 33.8
Mapoly0212s0009 Marchantia polymorpha HOM05D004108 ORTHO05D004849 2.4e-08 62.8 140 31.4
unitig_747.g21673 Utricularia gibba HOM05D004108 ORTHO05D004849 2.4e-08 62.8 124 33.9
HPP92_010562 Vanilla planifolia HOM05D004108 ORTHO05D004849 2.4e-08 62.8 130 36.2
CDE06G1682 Ceratophyllum demersum HOM05D004108 ORTHO05D004849 3.2e-08 62.4 132 35.6
Eucgr.F01583 Eucalyptus grandis HOM05D004108 ORTHO05D004849 3.2e-08 62.4 108 37.0
Nitab4.5_0001759g0080 Nicotiana tabacum HOM05D004108 ORTHO05D004849 4.2e-08 62.0 98 37.8
CDE02G0765 Ceratophyllum demersum HOM05D004108 ORTHO05D004849 5.4e-08 61.6 132 36.4
Rhsim06G0031500 Rhododendron simsii HOM05D004108 ORTHO05D004849 7.1e-08 61.2 117 40.2
SEGI_30411 Sequoiadendron giganteum HOM05D004108 ORTHO05D004849 1.2e-07 60.5 139 36.7
Aqoxy3G01077 Aquilegia oxysepala HOM05D004108 ORTHO05D004849 1.6e-07 60.1 124 30.6
DCAR_020978 Daucus carota HOM05D004108 ORTHO05D004849 1.6e-07 60.1 108 38.0
Mapoly0203s0009 Marchantia polymorpha HOM05D004108 ORTHO05D004849 1.6e-07 60.1 127 35.4
Pp3c20_22930 Physcomitrium patens HOM05D004108 ORTHO05D004849 7.9e-07 57.8 141 33.3
Mapoly0212s0008 Marchantia polymorpha HOM05D004108 ORTHO05D004849 1.7e-06 56.6 130 33.1
CDE05G3574 Ceratophyllum demersum HOM05D004108 ORTHO05D004849 2.3e-06 56.2 137 30.7
Mapoly0087s0045 Marchantia polymorpha HOM05D004108 ORTHO05D004849 2.3e-06 56.2 140 32.9
Phvul.009G058800 Phaseolus vulgaris HOM05D004108 ORTHO05D004849 2.3e-06 56.2 132 33.3
CAN.G890.28 Capsicum annuum HOM05D003374 ORTHO05D009470 5.1e-06 55.1 111 34.2
QL06p052079 Quercus lobata HOM05D003374 ORTHO05D009470 5.1e-06 55.1 126 30.2
Mapoly0087s0044 Marchantia polymorpha HOM05D004108 ORTHO05D004849 6.6e-06 54.7 141 29.1
Mapoly0212s0007 Marchantia polymorpha HOM05D004108 ORTHO05D004849 8.7e-06 54.3 132 28.0


User provided reference genes

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