Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA232G2439 Erigeron canadensis HOM05D005174 ORTHO05D006784 1.1e-176 623.2 327 100.0
HanXRQChr02g0041151 Helianthus annuus HOM05D005174 ORTHO05D006784 6.6e-129 464.5 311 78.8
Lsat_1_v5_gn_4_135460 Lactuca sativa HOM05D005174 ORTHO05D006784 5.8e-117 424.9 340 69.4
Dinv40398 Davidia involucrata HOM05D005174 ORTHO05D006784 7.0e-115 417.9 316 69.0
CSS0048949 Camellia sinensis var. sinensis HOM05D005174 ORTHO05D006784 1.1e-110 404.1 321 66.7
CSS0047682 Camellia sinensis var. sinensis HOM05D005174 ORTHO05D006784 5.2e-110 401.7 321 66.7
PGSC0003DMG400017574 Solanum tuberosum HOM05D005174 ORTHO05D006784 1.3e-108 397.1 315 65.7
Solyc06g060420.3 Solanum lycopersicum HOM05D005174 ORTHO05D006784 1.2e-106 390.6 321 64.2
Sopen06g020560 Solanum pennellii HOM05D005174 ORTHO05D006784 1.2e-106 390.6 321 63.9
Glyma.06G111200 Glycine max HOM05D005174 ORTHO05D006784 1.0e-105 387.5 324 66.4
Lj5g0013947 Lotus japonicus HOM05D005174 ORTHO05D006784 1.7e-105 386.7 317 67.2
MSTRG.1457 Avicennia marina HOM05D005174 ORTHO05D006784 3.9e-105 385.6 317 65.9
GSVIVG01008896001 Vitis vinifera HOM05D005174 ORTHO05D006784 5.1e-105 385.2 318 64.8
Ca_13578_v3 Cicer arietinum L. HOM05D005174 ORTHO05D006784 8.6e-105 384.4 320 66.6
Cc01_g07610 Coffea canephora HOM05D005174 ORTHO05D006784 1.9e-104 383.3 316 64.2
Duzib093G0119 Durio zibethinus HOM05D005174 ORTHO05D006784 9.5e-104 380.9 318 67.0
QL09p035644 Quercus lobata HOM05D005174 ORTHO05D006784 1.2e-103 380.6 316 65.8
Lj1g0014313 Lotus japonicus HOM05D005174 ORTHO05D006784 1.6e-103 380.2 317 66.2
COL.COLO4_12205 Corchorus olitorius HOM05D005174 ORTHO05D006784 2.1e-103 379.8 317 65.3
VMungo1309G0682 Vigna mungo HOM05D005174 ORTHO05D006784 6.2e-103 378.3 323 65.6
Medtr3g072620 Medicago truncatula HOM05D005174 ORTHO05D006784 1.8e-102 376.7 315 66.7
Prupe.1G501000 Prunus persica HOM05D005174 ORTHO05D006784 1.8e-102 376.7 323 65.0
Cfa015995 Carpinus fangiana HOM05D005174 ORTHO05D006784 3.1e-102 375.9 316 65.2
Migut.C01145 Erythranthe guttata HOM05D005174 ORTHO05D006784 3.1e-102 375.9 317 63.7
Eucgr.H00450 Eucalyptus grandis HOM05D005174 ORTHO05D006784 3.1e-102 375.9 324 64.2
Nitab4.5_0008211g0030 Nicotiana tabacum HOM05D005174 ORTHO05D006784 3.1e-102 375.9 335 60.6
Gohir.A05G233700 Gossypium hirsutum HOM05D005174 ORTHO05D006784 4.0e-102 375.6 317 64.7
arahy.Tifrunner.gnm1.ann1.3YB7R6 Arachis hypogaea HOM05D005174 ORTHO05D006784 5.2e-102 375.2 318 66.7
TAR381G1686 Trochodendron aralioides HOM05D005174 ORTHO05D006784 5.2e-102 375.2 318 64.5
Gorai.009G244400 Gossypium raimondii HOM05D005174 ORTHO05D006784 6.8e-102 374.8 317 64.7
Psat5g120840 Pisum sativum HOM05D005174 ORTHO05D006784 2.0e-101 373.2 319 66.1
CiPaw.05G223800 Carya illinoinensis HOM05D005174 ORTHO05D006784 3.4e-101 372.5 314 63.7
Gohir.D05G236100 Gossypium hirsutum HOM05D005174 ORTHO05D006784 4.4e-101 372.1 317 64.4
Gorai.005G090400 Gossypium raimondii HOM05D005174 ORTHO05D006784 5.8e-101 371.7 318 63.5
Lalb_Chr08g0241531 Lupinus albus HOM05D005174 ORTHO05D006784 5.8e-101 371.7 320 64.1
Phvul.009G123200 Phaseolus vulgaris HOM05D005174 ORTHO05D006784 5.8e-101 371.7 323 64.4
PGR044G1014 Punica granatum HOM05D005174 ORTHO05D006784 9.9e-101 370.9 320 62.8
Manes.02G161600 Manihot esculenta HOM05D005174 ORTHO05D006784 1.3e-100 370.5 320 62.5
Potri.005G175900 Populus trichocarpa HOM05D005174 ORTHO05D006784 1.3e-100 370.5 323 63.5
SalBow7G2597 Salvia bowleyana HOM05D005174 ORTHO05D006784 2.9e-100 369.4 357 59.1
Duzib116G0013 Durio zibethinus HOM05D005174 ORTHO05D006784 3.7e-100 369.0 339 61.7
TWI56G0960 Tripterygium wilfordii HOM05D005174 ORTHO05D006784 1.1e-99 367.5 313 63.6
Nn5g28198 Nelumbo nucifera HOM05D005174 ORTHO05D006784 1.4e-99 367.1 318 61.9
Hund24749 Selenicereus undatus HOM05D005174 ORTHO05D006784 1.9e-99 366.7 327 59.6
Lalb_Chr17g0343851 Lupinus albus HOM05D005174 ORTHO05D006784 9.2e-99 364.4 320 63.8
Cpa.g.sc36.39 Carica papaya HOM05D005174 ORTHO05D006784 1.2e-98 364.0 307 65.1
Thecc.08G122000 Theobroma cacao HOM05D005174 ORTHO05D006784 1.6e-98 363.6 318 64.2
TPR.G22992 Trifolium pratense HOM05D005174 ORTHO05D006784 2.7e-98 362.8 321 63.2
Glyma.14G147200 Glycine max HOM05D005174 ORTHO05D006784 4.6e-98 362.1 313 63.3
Ciclev10001813m.g Citrus clementina HOM05D005174 ORTHO05D006784 6.0e-98 361.7 318 63.2
Gohir.D02G080900 Gossypium hirsutum HOM05D005174 ORTHO05D006784 1.0e-97 360.9 318 62.9
SGA_v2.0_scaffold52G18977 Striga asiatica HOM05D005174 ORTHO05D006784 2.3e-97 359.8 317 61.5
Oeu047941.1 Olea europaea HOM05D005174 ORTHO05D006784 1.5e-96 357.1 323 60.7
CsaV3_4G028370 Cucumis sativus L. HOM05D005174 ORTHO05D006784 4.3e-96 355.5 315 62.2
Sed0012589 Sechium edule HOM05D005174 ORTHO05D006784 9.6e-96 354.4 308 62.3
CANSAT25G0921 Cannabis sativa HOM05D005174 ORTHO05D006784 1.2e-95 354.0 313 63.3
PSO782G4297 Papaver somniferum HOM05D005174 ORTHO05D006784 2.1e-95 353.2 323 60.4
ClCG11G015640 Citrullus lanatus HOM05D005174 ORTHO05D006784 2.8e-95 352.8 315 61.0
vmacro00818 Vaccinium macrocarpon HOM05D005174 ORTHO05D006784 8.1e-95 351.3 304 64.5
Aqoxy6G00176 Aquilegia oxysepala HOM05D005174 ORTHO05D006784 1.1e-94 350.9 323 58.5
RcHm_v2.0_Chr6g0295461 Rosa chinensis HOM05D005174 ORTHO05D006784 1.8e-94 350.1 318 61.3
arahy.Tifrunner.gnm1.ann1.Z8FB5F Arachis hypogaea HOM05D005174 ORTHO05D006784 3.1e-94 349.4 372 57.0
MD15G1352500 Malus domestica HOM05D005174 ORTHO05D006784 5.2e-94 348.6 321 60.1
Sc01g0001320 Simmondsia chinensis HOM05D005174 ORTHO05D006784 1.2e-93 347.4 319 59.9
PSO170G4538 Papaver somniferum HOM05D005174 ORTHO05D006784 3.4e-93 345.9 323 59.1
Actinidia29457 Actinidia chinensis HOM05D005174 ORTHO05D006784 5.8e-93 345.1 322 61.5
Eucgr.L02995 Eucalyptus grandis HOM05D005174 ORTHO05D006784 1.3e-92 344.0 322 60.2
AUR62042433 Chenopodium quinoa HOM05D005174 ORTHO05D006784 3.8e-92 342.4 328 56.4
Psat2g085920 Pisum sativum HOM05D005174 ORTHO05D006784 8.4e-92 341.3 365 54.5
ATR0193G024 Amborella trichopoda HOM05D005174 ORTHO05D006784 1.1e-91 340.9 314 59.6
FvH4_2g26610 Fragaria vesca HOM05D005174 ORTHO05D006784 3.2e-91 339.3 318 60.7
FAN24G0526 Fragaria x ananassa HOM05D005174 ORTHO05D006784 3.2e-91 339.3 318 60.7
Peaxi162Scf00051g00623 Petunia axillaris HOM05D005174 ORTHO05D006784 5.4e-91 338.6 317 59.3
Atru.chr13.1416 Acer truncatum HOM05D005174 ORTHO05D006784 2.3e-89 333.2 301 62.1
AUR62018164 Chenopodium quinoa HOM05D005174 ORTHO05D006784 5.1e-89 332.0 339 54.9
THA.LOC104806814 Tarenaya hassleriana HOM05D005174 ORTHO05D006784 6.6e-89 331.6 315 58.7
Sabra05G0132500 Salix brachista HOM05D005174 ORTHO05D006784 1.9e-88 330.1 380 53.2
RhsimUnG0094500 Rhododendron simsii HOM05D005174 ORTHO05D006784 5.6e-88 328.6 343 56.9
Aa31LG6G9210 Aethionema arabicum HOM05D005174 ORTHO05D006784 1.3e-87 327.4 312 56.7
CAN.G1396.5 Capsicum annuum HOM05D005174 ORTHO05D006784 8.1e-87 324.7 267 63.3
FAN20G1758 Fragaria x ananassa HOM05D005174 ORTHO05D006784 8.1e-87 324.7 320 58.1
BcaB04g17581 Brassica carinata HOM05D005174 ORTHO05D006784 1.8e-86 323.6 323 56.7
Carub.0001s3538 Capsella rubella HOM05D005174 ORTHO05D006784 3.1e-86 322.8 317 56.8
AL1G52500 Arabidopsis lyrata HOM05D005174 ORTHO05D006784 2.6e-85 319.7 315 56.8
EL10Ac2g03105 Beta vulgaris HOM05D005174 ORTHO05D006784 7.6e-85 318.2 308 57.1
AT1G44835 Arabidopsis thaliana HOM05D005174 ORTHO05D006784 2.9e-84 316.2 315 56.5
CDE05G2191 Ceratophyllum demersum HOM05D005174 ORTHO05D006784 4.9e-84 315.5 313 54.0
Nitab4.5_0000633g0140 Nicotiana tabacum HOM05D005174 ORTHO05D006784 4.9e-84 315.5 322 55.0
BraA08t32633Z Brassica rapa HOM05D005174 ORTHO05D006784 1.9e-83 313.5 322 55.6
A08p06300 Brassica napus HOM05D005174 ORTHO05D006784 2.4e-83 313.2 322 55.3
BcaC07g37283 Brassica carinata HOM05D005174 ORTHO05D006784 7.1e-83 311.6 322 55.0
C08p07120 Brassica napus HOM05D005174 ORTHO05D006784 7.1e-83 311.6 322 55.0
BolC8t47557H Brassica oleracea HOM05D005174 ORTHO05D006784 7.1e-83 311.6 322 55.0
Sp1g33700 Schrenkiella parvula HOM05D005174 ORTHO05D006784 7.1e-83 311.6 315 55.9
BcaC08g42881 Brassica carinata HOM05D005174 ORTHO05D006784 9.3e-83 311.2 322 54.3
CARHR036100 Cardamine hirsuta HOM05D005174 ORTHO05D006784 2.7e-82 309.7 311 56.9
C06p00970 Brassica napus HOM05D005174 ORTHO05D006784 4.6e-82 308.9 324 54.3
Thhalv10021201m.g Eutrema salsugineum HOM05D005174 ORTHO05D006784 4.6e-82 308.9 311 56.3
Thhalv10004660m.g Eutrema salsugineum HOM05D005174 ORTHO05D006784 6.0e-82 308.5 311 56.3
BolC6t35233H Brassica oleracea HOM05D005174 ORTHO05D006784 1.1e-80 304.3 324 53.7
A10p07300 Brassica napus HOM05D005174 ORTHO05D006784 7.3e-80 301.6 317 54.3
BraSC36t46091Z Brassica rapa HOM05D005174 ORTHO05D006784 7.3e-80 301.6 317 54.3
Os02g0767700 Oryza sativa ssp. japonica HOM05D005174 ORTHO05D006784 2.9e-76 289.7 311 52.7
Sc01g0001280 Simmondsia chinensis HOM05D005174 ORTHO05D006784 1.4e-75 287.3 271 57.9
DCAR_017401 Daucus carota HOM05D005174 ORTHO05D006784 2.4e-75 286.6 198 73.7
MELO3C032634.2 Cucumis melo HOM05D005174 ORTHO05D006784 1.0e-73 281.2 303 55.8
Zm00001eb193560 Zea mays HOM05D005174 ORTHO05D006784 2.3e-73 280.0 315 52.7
MBI03_g33021_MAGBIO Magnolia biondii HOM05D005174 ORTHO05D006784 1.3e-71 274.2 298 53.0
FAN27G1282 Fragaria x ananassa HOM05D005174 ORTHO05D006784 8.4e-68 261.5 316 51.3
FAN15G0922 Fragaria x ananassa HOM05D005174 ORTHO05D006784 3.5e-66 256.1 357 48.7
Ah.10g032020 Amaranthus hybridus HOM05D005174 ORTHO05D006784 7.9e-66 255.0 324 49.7
unitig_82.g26987 Utricularia gibba HOM05D005174 ORTHO05D006784 6.7e-65 251.9 302 50.3
SEGI_02373 Sequoiadendron giganteum HOM05D005174 ORTHO05D006784 1.5e-64 250.8 273 50.5
Gohir.A02G073700 Gossypium hirsutum HOM05D005174 ORTHO05D006784 1.3e-60 237.7 318 47.5
Pp3c18_22250 Physcomitrium patens HOM05D005174 ORTHO05D006784 1.7e-60 237.3 316 44.0
Mapoly0010s0001 Marchantia polymorpha HOM05D005174 ORTHO05D006784 1.4e-59 234.2 311 45.7
Lj7A337T25 Lonicera japonica HOM05D005174 ORTHO05D006784 1.8e-46 190.7 174 58.6
HPP92_001042 Vanilla planifolia HOM05D005174 ORTHO05D006784 2.0e-45 187.2 328 39.0
Cre10.g425950 Chlamydomonas reinhardtii HOM05D005174 ORTHO05D006784 2.2e-44 183.7 324 39.5
Haze_00470 Corylus avellana HOM05D005174 ORTHO05D006784 2.3e-41 173.7 110 81.8
PRCOL_00005180 Prasinoderma coloniale HOM05D005174 ORTHO05D006784 2.6e-37 160.2 172 47.7
MD08G1166300 Malus domestica HOM05D005174 ORTHO05D006784 1.7e-36 157.5 110 73.6
FAN20G0512 Fragaria x ananassa HOM05D005174 ORTHO05D006784 2.5e-35 153.7 267 41.9
Hund16845 Selenicereus undatus HOM05D005174 ORTHO05D006784 5.2e-33 146.0 105 69.5
Haze_00471 Corylus avellana HOM05D005174 ORTHO05D006784 2.8e-31 140.2 195 46.7
Sabra15G0076900 Salix brachista HOM05D000453 ORTHO05D000387 4.8e-31 139.4 154 53.9
SMO200G0142 Selaginella moellendorffii HOM05D000188 ORTHO05D007139 3.0e-25 120.2 255 34.9
Ca_03754_v3 Cicer arietinum L. HOM05D005174 ORTHO05D006784 4.2e-19 99.8 102 52.9
Glyma.04G251502 Glycine max HOM05D005174 ORTHO05D006784 4.2e-19 99.8 107 56.1
Sabra02G0067100 Salix brachista HOM05D005174 ORTHO05D006784 3.7e-15 86.7 79 59.5
arahy.Tifrunner.gnm1.ann1.032V6W Arachis hypogaea HOM05D005174 ORTHO05D015215 2.4e-14 84.0 46 89.1
arahy.Tifrunner.gnm1.ann1.PAU1NR Arachis hypogaea HOM05D005174 ORTHO05D015215 2.4e-14 84.0 46 89.1
arahy.Tifrunner.gnm1.ann1.RE5YQ2 Arachis hypogaea HOM05D005174 ORTHO05D015215 2.4e-14 84.0 46 89.1
Ca_03755_v3 Cicer arietinum L. HOM05D005174 ORTHO05D006784 1.2e-13 81.6 93 54.8
arahy.Tifrunner.gnm1.ann1.S56SQA Arachis hypogaea HOM05D005174 ORTHO05D015215 1.6e-13 81.3 67 61.2
Duzib041G0272 Durio zibethinus HOM05D005174 ORTHO05D015215 2.7e-13 80.5 49 81.6
arahy.Tifrunner.gnm1.ann1.W2W6PZ Arachis hypogaea HOM05D005174 ORTHO05D015215 4.5e-13 79.7 45 86.7
CiPaw.05G223900 Carya illinoinensis HOM05D005174 ORTHO05D006784 5.9e-13 79.3 83 50.6
Cfa010764 Carpinus fangiana HOM05D005174 ORTHO05D006784 5.0e-12 76.3 81 51.9
SEGI_30371 Sequoiadendron giganteum HOM05D005174 ORTHO05D050453 1.8e-09 67.8 53 60.4
MBI04_g30787_MAGBIO Magnolia biondii HOM05D005174 ORTHO05D006784 8.9e-09 65.5 89 42.7
Potri.002G085700 Populus trichocarpa HOM05D005174 ORTHO05D050453 3.4e-08 63.5 54 61.1
arahy.Tifrunner.gnm1.ann1.9F26EH Arachis hypogaea HOM05D005174 ORTHO05D015215 7.5e-08 62.4 51 66.7
SGA_v2.0_scaffold24G10473 Striga asiatica HOM05D021410 ORTHO05D401290 2.2e-07 60.8 36 77.8
Oeu059427.1 Olea europaea HOM05D005174 ORTHO05D006784 1.8e-06 57.8 45 60.0


User provided reference genes

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