Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA232G2303 Erigeron canadensis HOM05D000726 ORTHO05D007554 0.0e+00 2226.1 1204 100.0
HanXRQChr12g0373111 Helianthus annuus HOM05D000726 ORTHO05D007554 0.0e+00 1506.9 1273 65.9
Lsat_1_v5_gn_4_160781 Lactuca sativa HOM05D000726 ORTHO05D007554 0.0e+00 1333.9 1267 59.6
CSS0015479 Camellia sinensis var. sinensis HOM05D000726 ORTHO05D007554 0.0e+00 1256.9 1277 54.4
CSS0022432 Camellia sinensis var. sinensis HOM05D000726 ORTHO05D007554 0.0e+00 1229.5 1277 53.5
Actinidia36435 Actinidia chinensis HOM05D000726 ORTHO05D007554 0.0e+00 1186.0 1267 53.4
vmacro05404 Vaccinium macrocarpon HOM05D000726 ORTHO05D007554 0.0e+00 1182.2 1293 51.7
Haze_15292 Corylus avellana HOM05D000726 ORTHO05D007554 0.0e+00 1137.1 1276 50.9
Nitab4.5_0001417g0030 Nicotiana tabacum HOM05D000726 ORTHO05D007554 0.0e+00 1123.2 1266 49.4
TAR376G0399 Trochodendron aralioides HOM05D000726 ORTHO05D007554 0.0e+00 1119.8 1276 50.2
Cfa004123 Carpinus fangiana HOM05D000726 ORTHO05D007554 0.0e+00 1117.1 1277 50.0
MD02G1184600 Malus domestica HOM05D000726 ORTHO05D007554 0.0e+00 1112.8 1276 50.6
Nitab4.5_0006813g0010 Nicotiana tabacum HOM05D000726 ORTHO05D007554 0.0e+00 1112.1 1285 50.0
PGSC0003DMG400009094 Solanum tuberosum HOM05D000726 ORTHO05D007554 0.0e+00 1098.6 1266 49.4
QL06p039670 Quercus lobata HOM05D000726 ORTHO05D007554 0.0e+00 1097.8 1270 50.2
CAN.G278.12 Capsicum annuum HOM05D000726 ORTHO05D007554 0.0e+00 1094.7 1266 48.7
MSTRG.23676 Avicennia marina HOM05D000726 ORTHO05D007554 0.0e+00 1093.6 1265 49.5
Manes.13G112300 Manihot esculenta HOM05D000726 ORTHO05D007554 0.0e+00 1091.3 1271 49.6
Sopen03g007820 Solanum pennellii HOM05D000726 ORTHO05D007554 0.0e+00 1090.1 1246 49.3
Solyc03g044020.4 Solanum lycopersicum HOM05D000726 ORTHO05D007554 0.0e+00 1084.7 1247 49.2
TWI09G1290 Tripterygium wilfordii HOM05D000726 ORTHO05D007554 0.0e+00 1084.7 1266 49.5
RcHm_v2.0_Chr2g0138631 Rosa chinensis HOM05D000726 ORTHO05D007554 0.0e+00 1084.3 1268 50.2
Migut.H00354 Erythranthe guttata HOM05D000726 ORTHO05D007554 0.0e+00 1075.5 1266 47.9
Peaxi162Scf00118g01929 Petunia axillaris HOM05D000726 ORTHO05D007554 8.2e-312 1073.5 1253 48.8
CANSAT01G3261 Cannabis sativa HOM05D000726 ORTHO05D007554 4.1e-311 1071.6 1270 47.6
Nn4g25316 Nelumbo nucifera HOM05D000726 ORTHO05D007554 7.4e-311 1070.8 1259 48.4
Ciclev10024730m.g Citrus clementina HOM05D000726 ORTHO05D007554 2.9e-307 1058.9 1268 48.7
Atru.chr3.177 Acer truncatum HOM05D000726 ORTHO05D007554 4.9e-307 1058.1 1269 49.1
FAN05G3645 Fragaria x ananassa HOM05D000726 ORTHO05D007554 6.4e-307 1057.7 1262 49.0
FAN14G0573 Fragaria x ananassa HOM05D000726 ORTHO05D007554 9.3e-306 1053.9 1262 49.4
FvH4_6g31560 Fragaria vesca HOM05D000726 ORTHO05D007554 1.2e-305 1053.5 1264 49.2
Gorai.007G222900 Gossypium raimondii HOM05D000726 ORTHO05D007554 2.7e-305 1052.4 1261 47.8
Rhsim10G0100700 Rhododendron simsii HOM05D000726 ORTHO05D007554 7.9e-305 1050.8 1211 51.3
Aqoxy6G02647 Aquilegia oxysepala HOM05D000726 ORTHO05D007554 1.0e-304 1050.4 1263 47.7
Gohir.D11G207900 Gossypium hirsutum HOM05D000726 ORTHO05D007554 2.3e-304 1049.3 1261 47.7
Gohir.A11G215400 Gossypium hirsutum HOM05D000726 ORTHO05D007554 5.1e-304 1048.1 1261 47.8
Potri.007G055400 Populus trichocarpa HOM05D000726 ORTHO05D007554 1.9e-303 1046.2 1262 49.8
Duzib147G0272 Durio zibethinus HOM05D000726 ORTHO05D007554 2.1e-302 1042.7 1269 48.1
Glyma.01G193500 Glycine max HOM05D000726 ORTHO05D007554 1.5e-300 1036.6 1274 49.0
Lj7A95G20 Lonicera japonica HOM05D000726 ORTHO05D007554 1.5e-300 1036.6 1265 50.0
Sed0012994 Sechium edule HOM05D000726 ORTHO05D007554 7.9e-297 1024.2 1266 47.3
PGR102G1358 Punica granatum HOM05D000726 ORTHO05D007554 1.0e-296 1023.8 1265 47.0
ClCG01G017520 Citrullus lanatus HOM05D000726 ORTHO05D007554 1.5e-295 1020.0 1277 47.0
DCAR_010826 Daucus carota HOM05D000726 ORTHO05D007554 1.9e-295 1019.6 1255 47.3
CsaV3_6G044070 Cucumis sativus L. HOM05D000726 ORTHO05D007554 7.4e-295 1017.7 1265 47.0
Sc03g0002340 Simmondsia chinensis HOM05D000726 ORTHO05D007554 2.8e-294 1015.8 1269 47.0
arahy.Tifrunner.gnm1.ann1.1ZHU8Z Arachis hypogaea HOM05D000726 ORTHO05D007554 3.1e-293 1012.3 1272 45.8
SGA_v2.0_scaffold15G07449 Striga asiatica HOM05D000726 ORTHO05D007554 4.1e-293 1011.9 1311 45.7
MELO3C007629.2 Cucumis melo HOM05D000726 ORTHO05D007554 3.4e-292 1008.8 1283 46.1
Cc07_g07020 Coffea canephora HOM05D000726 ORTHO05D007554 5.9e-292 1008.1 1251 46.9
Hund16395 Selenicereus undatus HOM05D000726 ORTHO05D007554 1.3e-291 1006.9 1268 48.7
Medtr5g015600 Medicago truncatula HOM05D000726 ORTHO05D007554 5.0e-291 1005.0 1289 45.5
VMungo1215G2083 Vigna mungo HOM05D000726 ORTHO05D007554 5.5e-290 1001.5 1261 46.6
Psat2g171280 Pisum sativum HOM05D000726 ORTHO05D007554 2.7e-289 999.2 1243 47.0
EL10Ac6g15628 Beta vulgaris HOM05D000726 ORTHO05D007554 1.8e-288 996.5 1266 47.2
PSO675G6338 Papaver somniferum HOM05D000726 ORTHO05D007554 3.0e-288 995.7 1266 47.6
PSO541G0636 Papaver somniferum HOM05D000726 ORTHO05D007554 5.1e-288 995.0 1272 47.9
Phvul.002G011500 Phaseolus vulgaris HOM05D000726 ORTHO05D007554 5.1e-288 995.0 1269 45.9
FAN02G1686 Fragaria x ananassa HOM05D000726 ORTHO05D007554 5.7e-287 991.5 1202 49.4
arahy.Tifrunner.gnm1.ann1.6361M0 Arachis hypogaea HOM05D000726 ORTHO05D007554 1.3e-286 990.3 1236 46.3
COL.COLO4_11566 Corchorus olitorius HOM05D000726 ORTHO05D007554 6.3e-286 988.0 1270 46.0
THA.LOC104819266 Tarenaya hassleriana HOM05D000726 ORTHO05D007554 3.1e-285 985.7 1271 46.3
Ca_24700_v3 Cicer arietinum L. HOM05D000726 ORTHO05D007554 2.2e-283 979.5 1280 45.6
CARHR056360 Cardamine hirsuta HOM05D000726 ORTHO05D007554 5.0e-283 978.4 1255 45.6
Ah.03g140460 Amaranthus hybridus HOM05D000726 ORTHO05D007554 8.5e-283 977.6 1260 45.6
Atru.BG.105.p Acer truncatum HOM05D000726 ORTHO05D007554 1.6e-281 973.4 1067 51.3
Dinv26921 Davidia involucrata HOM05D000726 ORTHO05D007554 3.6e-281 972.2 1018 53.1
Eucgr.H02305 Eucalyptus grandis HOM05D000726 ORTHO05D007554 6.7e-280 968.0 1252 46.0
Lj2g0006912 Lotus japonicus HOM05D000726 ORTHO05D007554 6.7e-280 968.0 1273 46.5
Prupe.6G221900 Prunus persica HOM05D000726 ORTHO05D007554 6.7e-280 968.0 921 58.8
TPR.G34847 Trifolium pratense HOM05D000726 ORTHO05D007554 2.6e-279 966.1 1277 44.1
AUR62003999 Chenopodium quinoa HOM05D000726 ORTHO05D007554 4.1e-277 958.7 1259 45.3
Lalb_Chr09g0323571 Lupinus albus HOM05D000726 ORTHO05D007554 1.2e-276 957.2 1158 47.2
Sp5g19220 Schrenkiella parvula HOM05D000726 ORTHO05D007554 9.1e-269 931.0 1260 44.4
AL2G19510 Arabidopsis lyrata HOM05D000726 ORTHO05D007554 2.0e-268 929.9 1259 43.9
Thhalv10023223m.g Eutrema salsugineum HOM05D000726 ORTHO05D007554 2.3e-264 916.4 1258 43.2
Aa31LG2G2150 Aethionema arabicum HOM05D000726 ORTHO05D007554 3.0e-264 916.0 1260 43.0
AT1G64960 Arabidopsis thaliana HOM05D000726 ORTHO05D007554 1.2e-263 914.1 1264 43.9
Thecc.01G071800 Theobroma cacao HOM05D000726 ORTHO05D007554 1.2e-263 914.1 917 56.2
Sabra07G0047700 Salix brachista HOM05D000726 ORTHO05D007554 3.3e-263 912.5 1258 45.6
Thhalv10000018m.g Eutrema salsugineum HOM05D000726 ORTHO05D007554 7.0e-261 904.8 1225 43.5
FAN09G4729 Fragaria x ananassa HOM05D000726 ORTHO05D007554 1.0e-259 901.0 1202 47.2
Cpa.g.sc6.26 Carica papaya HOM05D000726 ORTHO05D007554 2.2e-259 899.8 881 55.2
C06p38860 Brassica napus HOM05D000726 ORTHO05D007554 1.3e-254 884.0 1258 44.0
BolC6t38979H Brassica oleracea HOM05D000726 ORTHO05D007554 3.7e-254 882.5 1259 44.7
BcaB03g15339 Brassica carinata HOM05D000726 ORTHO05D007554 4.8e-254 882.1 1258 44.6
SHI31766 Sapria himalayana HOM05D000726 ORTHO05D007554 5.4e-245 852.0 1254 43.0
BraA07t30892Z Brassica rapa HOM05D000726 ORTHO05D007554 1.0e-243 847.8 1258 43.7
Thhalv10001287m.g Eutrema salsugineum HOM05D000726 ORTHO05D007554 2.1e-220 770.4 1212 40.1
Carub.0002s1010 Capsella rubella HOM05D000726 ORTHO05D007554 2.3e-219 766.9 1050 43.1
Thhalv10006613m.g Eutrema salsugineum HOM05D000726 ORTHO05D007554 2.3e-219 766.9 1223 39.7
CDE04G3158 Ceratophyllum demersum HOM05D000726 ORTHO05D007554 3.3e-210 736.5 1171 39.9
A07p32680 Brassica napus HOM05D000726 ORTHO05D007554 1.8e-208 730.7 874 49.5
AUR62040247 Chenopodium quinoa HOM05D000726 ORTHO05D007554 5.1e-203 712.6 986 43.6
unitig_0.g505 Utricularia gibba HOM05D000726 ORTHO05D007554 9.6e-202 708.4 1240 38.2
ATR0208G028 Amborella trichopoda HOM05D000726 ORTHO05D007554 6.0e-196 689.1 930 45.3
GSVIVG01000124001 Vitis vinifera HOM05D000726 ORTHO05D007554 7.4e-194 682.2 945 46.0
Zm00001eb051460 Zea mays HOM05D000726 ORTHO05D007554 1.1e-189 668.3 1254 36.0
SalBow3G2688 Salvia bowleyana HOM05D000726 ORTHO05D007554 4.8e-177 626.3 901 42.4
Os03g0616500 Oryza sativa ssp. japonica HOM05D000726 ORTHO05D007554 1.3e-161 575.1 773 41.9
HPP92_014039 Vanilla planifolia HOM05D000726 ORTHO05D007554 2.7e-156 557.4 570 51.2
Mapoly0045s0033 Marchantia polymorpha HOM05D000726 ORTHO05D007554 5.7e-154 549.7 871 38.6
SEGI_06920 Sequoiadendron giganteum HOM05D000726 ORTHO05D007554 6.3e-153 546.2 886 37.5
SMO364G0657 Selaginella moellendorffii HOM05D000726 ORTHO05D007554 1.3e-150 538.5 764 40.8
AagrBONN_evm.TU.Sc2ySwM_117.495 Anthoceros agrestis HOM05D000726 ORTHO05D007554 1.3e-142 511.9 835 37.2
CiPaw.01G005400 Carya illinoinensis HOM05D000726 ORTHO05D007554 4.2e-133 480.3 430 61.9
HPP92_028352 Vanilla planifolia HOM05D000726 ORTHO05D007554 4.9e-129 466.8 651 41.0
Oeu003558.1 Olea europaea HOM05D000726 ORTHO05D007554 3.4e-106 391.0 374 57.0
SEGI_38739 Sequoiadendron giganteum HOM05D000726 ORTHO05D007554 3.5e-103 380.9 591 38.6
Glyma.11G048432 Glycine max HOM05D000726 ORTHO05D007554 3.1e-91 341.3 236 71.6
Sabra16G0084600 Salix brachista HOM05D000726 ORTHO05D007554 1.9e-88 332.0 363 53.7
Sabra11G0026400 Salix brachista HOM05D000726 ORTHO05D007554 2.7e-87 328.2 352 54.5
Sabra11G0056500 Salix brachista HOM05D000726 ORTHO05D007554 8.7e-86 323.2 352 54.3
PRCOL_00006071 Prasinoderma coloniale HOM05D000726 ORTHO05D007554 3.1e-83 314.7 457 37.2
Cre06.g262800 Chlamydomonas reinhardtii HOM05D000726 ORTHO05D007554 5.9e-66 257.3 494 33.0
HPP92_014040 Vanilla planifolia HOM05D000726 ORTHO05D007554 8.5e-57 226.9 650 28.0
CBR_g29418 Chara braunii HOM05D000019 ORTHO05D000002 1.8e-54 219.2 340 34.1
CiPaw.01G005300 Carya illinoinensis HOM05D000726 ORTHO05D007554 7.4e-53 213.8 460 33.5
SEGI_24863 Sequoiadendron giganteum HOM05D000726 ORTHO05D007554 2.0e-42 179.1 327 34.9
RcHm_v2.0_Chr2g0138441 Rosa chinensis HOM05D000726 ORTHO05D007554 7.7e-42 177.2 381 34.6
Cpa.g.sc6.25 Carica papaya HOM05D000726 ORTHO05D007554 8.0e-39 167.2 384 32.8
Glyma.11G048366 Glycine max HOM05D000726 ORTHO05D007554 7.0e-35 154.1 407 30.5
Glyma.08G243550 Glycine max HOM05D000726 ORTHO05D025659 8.0e-23 114.0 174 37.9
Lj7C94G0 Lonicera japonica HOM05D000726 ORTHO05D007554 2.7e-18 99.0 203 36.0
Nn1g04578 Nelumbo nucifera HOM05D000726 ORTHO05D007554 3.5e-18 98.6 277 26.7
Nn1g04577 Nelumbo nucifera HOM05D000726 ORTHO05D007554 1.3e-17 96.7 122 41.0
Lsat_1_v5_gn_2_113660 Lactuca sativa HOM05D000726 ORTHO05D007554 1.4e-14 86.7 61 72.1
ATR0208G027 Amborella trichopoda HOM05D000726 ORTHO05D007554 7.0e-11 74.3 218 31.2
Psat0s3193g0080 Pisum sativum HOM05D000726 ORTHO05D025659 1.4e-06 60.1 117 30.8
Psat3g174600 Pisum sativum HOM05D000726 ORTHO05D025659 3.1e-06 58.9 110 32.7


User provided reference genes

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