Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA232G2226 Erigeron canadensis HOM05D004733 ORTHO05D005925 0.0e+00 2102.0 1039 100.0
HanXRQChr09g0261511 Helianthus annuus HOM05D004733 ORTHO05D005925 0.0e+00 1762.3 1030 83.2
Lsat_1_v5_gn_4_152020 Lactuca sativa HOM05D004733 ORTHO05D005925 0.0e+00 1642.5 1030 78.7
GSVIVG01018952001 Vitis vinifera HOM05D004733 ORTHO05D005925 0.0e+00 1342.8 1044 62.7
CSS0026274 Camellia sinensis var. sinensis HOM05D004733 ORTHO05D005925 0.0e+00 1297.3 1036 62.3
Nn5g29624 Nelumbo nucifera HOM05D004733 ORTHO05D005925 0.0e+00 1287.3 1031 60.5
Actinidia36563 Actinidia chinensis HOM05D004733 ORTHO05D005925 0.0e+00 1271.5 1037 60.1
Cfa004311 Carpinus fangiana HOM05D004733 ORTHO05D005925 0.0e+00 1271.5 1038 59.8
Lj4A201T52 Lonicera japonica HOM05D004733 ORTHO05D005925 0.0e+00 1261.1 1112 58.2
Atru.chr3.583 Acer truncatum HOM05D004733 ORTHO05D005925 0.0e+00 1256.5 1029 60.2
Dinv39990 Davidia involucrata HOM05D004733 ORTHO05D005925 0.0e+00 1254.6 1058 59.4
PGR119G1063 Punica granatum HOM05D004733 ORTHO05D005925 0.0e+00 1252.7 1033 58.9
CiPaw.02G018200 Carya illinoinensis HOM05D004733 ORTHO05D005925 0.0e+00 1250.0 1029 59.4
Aqoxy6G01122 Aquilegia oxysepala HOM05D004733 ORTHO05D005925 0.0e+00 1249.6 1042 58.6
Ciclev10024776m.g Citrus clementina HOM05D004733 ORTHO05D005925 0.0e+00 1247.3 1030 59.4
Prupe.7G155300 Prunus persica HOM05D004733 ORTHO05D005925 0.0e+00 1247.3 1037 59.5
FvH4_1g13250 Fragaria vesca HOM05D004733 ORTHO05D005925 0.0e+00 1243.4 1032 58.7
Sc03g0003000 Simmondsia chinensis HOM05D004733 ORTHO05D005925 0.0e+00 1234.2 1015 59.7
MD02G1146900 Malus domestica HOM05D004733 ORTHO05D005925 0.0e+00 1229.5 1032 59.1
QL04p047829 Quercus lobata HOM05D004733 ORTHO05D005925 0.0e+00 1226.8 1066 58.1
RcHm_v2.0_Chr2g0101431 Rosa chinensis HOM05D004733 ORTHO05D005925 0.0e+00 1226.5 1034 58.5
Potri.007G024600 Populus trichocarpa HOM05D004733 ORTHO05D005925 0.0e+00 1223.0 1034 58.2
TWI77G0475 Tripterygium wilfordii HOM05D004733 ORTHO05D005925 0.0e+00 1221.5 1028 58.9
Cc03_g11520 Coffea canephora HOM05D004733 ORTHO05D005925 0.0e+00 1219.1 1043 58.1
Migut.H00986 Erythranthe guttata HOM05D004733 ORTHO05D005925 0.0e+00 1214.5 1040 58.5
Rhsim02G0060300 Rhododendron simsii HOM05D004733 ORTHO05D005925 0.0e+00 1214.5 1149 54.3
arahy.Tifrunner.gnm1.ann1.6U5FTL Arachis hypogaea HOM05D004733 ORTHO05D005925 0.0e+00 1213.4 1033 57.7
arahy.Tifrunner.gnm1.ann1.VZ5KK1 Arachis hypogaea HOM05D004733 ORTHO05D005925 0.0e+00 1206.4 1030 57.7
arahy.Tifrunner.gnm1.ann1.VB3WEH Arachis hypogaea HOM05D004733 ORTHO05D005925 0.0e+00 1205.3 1037 57.2
Manes.02G094400 Manihot esculenta HOM05D004733 ORTHO05D005925 0.0e+00 1205.3 1021 57.8
FAN19G0915 Fragaria x ananassa HOM05D004733 ORTHO05D005925 0.0e+00 1201.4 1032 57.7
CANSAT78G0304 Cannabis sativa HOM05D004733 ORTHO05D005925 0.0e+00 1201.0 1028 57.9
Hma1.2p1_0789F.1_g218380 Hydrangea macrophylla HOM05D004733 ORTHO05D005925 0.0e+00 1196.0 1044 57.9
MSTRG.23523 Avicennia marina HOM05D004733 ORTHO05D005925 0.0e+00 1195.3 1037 56.2
Carub.0002s0104 Capsella rubella HOM05D004733 ORTHO05D005925 0.0e+00 1194.9 1034 56.6
PSO675G5282 Papaver somniferum HOM05D004733 ORTHO05D005925 0.0e+00 1194.9 1039 57.4
THA.LOC104809497 Tarenaya hassleriana HOM05D004733 ORTHO05D005925 0.0e+00 1194.1 1034 57.4
EL10Ac6g15557 Beta vulgaris HOM05D004733 ORTHO05D005925 0.0e+00 1192.9 1061 56.2
AL2G11330 Arabidopsis lyrata HOM05D004733 ORTHO05D005925 0.0e+00 1192.2 1034 56.7
Lj1g0005862 Lotus japonicus HOM05D004733 ORTHO05D005925 0.0e+00 1191.8 1029 57.0
Glyma.11G068600 Glycine max HOM05D004733 ORTHO05D005925 0.0e+00 1191.4 1015 57.0
Hund16432 Selenicereus undatus HOM05D004733 ORTHO05D005925 0.0e+00 1190.6 1069 56.6
Lalb_Chr16g0377811 Lupinus albus HOM05D004733 ORTHO05D005925 0.0e+00 1189.5 1039 56.8
Oeu017201.1 Olea europaea HOM05D004733 ORTHO05D005925 0.0e+00 1185.2 1082 55.5
Gohir.D11G190600 Gossypium hirsutum HOM05D004733 ORTHO05D005925 0.0e+00 1184.5 1030 57.5
Gohir.A11G184100 Gossypium hirsutum HOM05D004733 ORTHO05D005925 0.0e+00 1183.7 1030 57.6
Thecc.01G034700 Theobroma cacao HOM05D004733 ORTHO05D005925 0.0e+00 1183.7 1033 57.7
PSO541G3573 Papaver somniferum HOM05D004733 ORTHO05D005925 0.0e+00 1181.8 1039 56.8
Glyma.01G176400 Glycine max HOM05D004733 ORTHO05D005925 0.0e+00 1181.4 1031 56.0
AT1G63810 Arabidopsis thaliana HOM05D004733 ORTHO05D005925 0.0e+00 1177.5 1016 57.0
Phvul.002G030700 Phaseolus vulgaris HOM05D004733 ORTHO05D005925 0.0e+00 1176.4 1029 55.9
Thhalv10024292m.g Eutrema salsugineum HOM05D004733 ORTHO05D005925 0.0e+00 1174.8 1034 55.9
BolC3t20259H Brassica oleracea HOM05D004733 ORTHO05D005925 0.0e+00 1173.7 1034 56.1
Sp7g34280 Schrenkiella parvula HOM05D004733 ORTHO05D005925 0.0e+00 1172.5 1033 55.8
Gorai.007G203100 Gossypium raimondii HOM05D004733 ORTHO05D005925 0.0e+00 1171.8 1037 56.8
Ah.03g140900 Amaranthus hybridus HOM05D004733 ORTHO05D005925 0.0e+00 1171.0 1034 55.9
C03p80050 Brassica napus HOM05D004733 ORTHO05D005925 0.0e+00 1170.6 1034 56.1
A08p22270 Brassica napus HOM05D004733 ORTHO05D005925 0.0e+00 1170.2 1034 55.9
BraA08t34186Z Brassica rapa HOM05D004733 ORTHO05D005925 0.0e+00 1168.7 1034 55.8
AUR62004057 Chenopodium quinoa HOM05D004733 ORTHO05D005925 0.0e+00 1167.9 1028 56.8
Duzib187G1802 Durio zibethinus HOM05D004733 ORTHO05D005925 0.0e+00 1167.9 1033 56.7
SalBow2G0826 Salvia bowleyana HOM05D004733 ORTHO05D005925 0.0e+00 1167.5 1038 55.5
CsaV3_6G008550 Cucumis sativus L. HOM05D004733 ORTHO05D005925 0.0e+00 1166.8 1030 55.3
CsaV3_5G036970 Cucumis sativus L. HOM05D004733 ORTHO05D005925 0.0e+00 1161.4 1037 54.9
Medtr5g020190 Medicago truncatula HOM05D004733 ORTHO05D005925 0.0e+00 1160.6 1017 55.1
Sed0013525 Sechium edule HOM05D004733 ORTHO05D005925 0.0e+00 1159.8 1033 54.6
Psat2g159520 Pisum sativum HOM05D004733 ORTHO05D005925 0.0e+00 1159.1 1015 55.7
CARHR047390 Cardamine hirsuta HOM05D004733 ORTHO05D005925 0.0e+00 1153.3 1035 54.9
MELO3C022270.2 Cucumis melo HOM05D004733 ORTHO05D005925 0.0e+00 1152.5 1038 54.5
AUR62007571 Chenopodium quinoa HOM05D004733 ORTHO05D005925 0.0e+00 1147.1 1061 55.1
Cpa.g.sc6.117 Carica papaya HOM05D004733 ORTHO05D005925 0.0e+00 1146.7 1051 54.7
VMungo1215G0507 Vigna mungo HOM05D004733 ORTHO05D005925 0.0e+00 1143.3 981 56.5
FAN23G1660 Fragaria x ananassa HOM05D004733 ORTHO05D005925 0.0e+00 1142.1 1032 55.4
Solyc02g085230.3 Solanum lycopersicum HOM05D004733 ORTHO05D005925 0.0e+00 1135.6 1031 54.3
Sopen02g029930 Solanum pennellii HOM05D004733 ORTHO05D005925 0.0e+00 1133.2 1031 54.1
TAR625G0290 Trochodendron aralioides HOM05D004733 ORTHO05D005925 0.0e+00 1127.9 1029 54.7
ClCG06G002580 Citrullus lanatus HOM05D004733 ORTHO05D005925 0.0e+00 1124.4 1048 54.0
vmacro15553 Vaccinium macrocarpon HOM05D004733 ORTHO05D005925 0.0e+00 1121.7 1177 51.7
COL.COLO4_08906 Corchorus olitorius HOM05D004733 ORTHO05D005925 0.0e+00 1120.9 1062 54.1
Sabra07G0021700 Salix brachista HOM05D004733 ORTHO05D005925 0.0e+00 1103.6 1080 52.9
Ca_24849_v3 Cicer arietinum L. HOM05D004733 ORTHO05D005925 0.0e+00 1097.4 1014 53.2
Nitab4.5_0001385g0060 Nicotiana tabacum HOM05D004733 ORTHO05D005925 0.0e+00 1085.1 1042 52.9
Peaxi162Scf00366g00125 Petunia axillaris HOM05D004733 ORTHO05D005925 0.0e+00 1082.0 1033 53.6
FAN28G2014 Fragaria x ananassa HOM05D004733 ORTHO05D005925 0.0e+00 1080.9 1037 53.3
BcaC01g00457 Brassica carinata HOM05D004733 ORTHO05D005925 0.0e+00 1075.1 1033 52.9
Zm00001eb139270 Zea mays HOM05D004733 ORTHO05D005925 9.5e-307 1057.0 1040 51.5
ATR0665G204 Amborella trichopoda HOM05D004733 ORTHO05D005925 1.4e-305 1053.1 1028 51.8
Nitab4.5_0000178g0060 Nicotiana tabacum HOM05D004733 ORTHO05D005925 1.5e-304 1049.7 1118 48.8
CDE02G4373 Ceratophyllum demersum HOM05D004733 ORTHO05D005925 3.4e-304 1048.5 1028 51.8
DCAR_017293 Daucus carota HOM05D004733 ORTHO05D005925 1.2e-301 1040.0 1035 52.4
Eucgr.I02440 Eucalyptus grandis HOM05D004733 ORTHO05D005925 9.9e-288 993.8 835 58.6
MBI14_g08060_MAGBIO Magnolia biondii HOM05D004733 ORTHO05D005925 1.1e-278 963.8 875 54.4
SEGI_35015 Sequoiadendron giganteum HOM05D004733 ORTHO05D005925 2.2e-263 912.9 1018 47.0
A05p29760 Brassica napus HOM05D004733 ORTHO05D005925 1.1e-251 874.0 897 51.3
unitig_21.g20953 Utricularia gibba HOM05D004733 ORTHO05D005925 9.4e-238 827.8 1054 43.8
Pp3c6_25920 Physcomitrium patens HOM05D004733 ORTHO05D005925 4.1e-225 785.8 1044 42.8
Haze_15084 Corylus avellana HOM05D004733 ORTHO05D005925 5.5e-222 775.4 881 47.3
TPR.G22288 Trifolium pratense HOM05D004733 ORTHO05D005925 2.1e-213 746.9 643 56.9
Hma1.2p1_0789F.1_g218390 Hydrangea macrophylla HOM05D004733 ORTHO05D005925 7.5e-195 685.3 508 63.4
CAN.G358.87 Capsicum annuum HOM05D004733 ORTHO05D005925 2.9e-194 683.3 733 49.0
CAN.G3433.1 Capsicum annuum HOM05D004733 ORTHO05D005925 3.6e-189 666.4 705 49.2
A05p29530 Brassica napus HOM05D004733 ORTHO05D005925 8.0e-189 665.2 731 49.4
HPP92_009474 Vanilla planifolia HOM05D004733 ORTHO05D005925 1.1e-182 644.8 822 44.9
SGA_v2.0_scaffold54G19532 Striga asiatica HOM05D004733 ORTHO05D005925 4.0e-180 636.3 667 49.0
Mapoly0060s0020 Marchantia polymorpha HOM05D004733 ORTHO05D005925 4.9e-178 629.4 837 41.2
SEGI_33720 Sequoiadendron giganteum HOM05D004733 ORTHO05D005925 4.9e-178 629.4 699 47.4
CBR_g37736 Chara braunii HOM05D004733 ORTHO05D000048 1.4e-172 611.3 990 36.5
BcaNung05455 Brassica carinata HOM05D004733 ORTHO05D005925 3.4e-171 606.7 507 57.0
SMO347G0575 Selaginella moellendorffii HOM05D004733 ORTHO05D005925 8.6e-167 592.0 1034 37.6
MD15G1261100 Malus domestica HOM05D004733 ORTHO05D005925 4.6e-160 569.7 514 57.0
Aa31LG3G3780 Aethionema arabicum HOM05D004733 ORTHO05D005925 1.6e-157 561.2 507 53.8
AagrBONN_evm.TU.Sc2ySwM_228.918 Anthoceros agrestis HOM05D004733 ORTHO05D005925 4.5e-155 553.1 830 37.5
SHI09115 Sapria himalayana HOM05D004733 ORTHO05D005925 4.8e-149 533.1 607 47.1
QL06p046231 Quercus lobata HOM05D004733 ORTHO05D005925 2.7e-144 517.3 487 55.2
RcHm_v2.0_Chr2g0101471 Rosa chinensis HOM05D004733 ORTHO05D005925 1.4e-124 451.8 355 62.8
QL02p065465 Quercus lobata HOM05D004733 ORTHO05D005925 4.5e-123 446.8 437 54.7
Os12g0166500 Oryza sativa ssp. japonica HOM05D004733 ORTHO05D005925 7.7e-123 446.0 458 49.1
TPR.G8389 Trifolium pratense HOM05D004733 ORTHO05D005925 1.5e-110 405.2 344 54.7
CAN.G358.91 Capsicum annuum HOM05D004733 ORTHO05D005925 1.3e-109 402.1 350 56.3
Aa31LG3G3760 Aethionema arabicum HOM05D004733 ORTHO05D005925 5.3e-108 396.7 341 56.9
MCO15G114 Micromonas commoda HOM05D004733 ORTHO05D005925 1.7e-106 391.7 855 31.7
Cre07.g332800 Chlamydomonas reinhardtii HOM05D004733 ORTHO05D005925 2.3e-87 328.2 1132 26.9
Actinidia12125 Actinidia chinensis HOM05D004733 ORTHO05D005925 2.7e-75 288.1 270 52.6
Cfa025732 Carpinus fangiana HOM05D004733 ORTHO05D005925 3.9e-66 257.7 986 26.1
arahy.Tifrunner.gnm1.ann1.VLQ9MW Arachis hypogaea HOM05D004733 ORTHO05D005925 3.1e-63 248.1 242 50.8
GSVIVG01024291001 Vitis vinifera HOM05D004733 ORTHO05D005925 1.9e-60 238.8 177 65.0
arahy.Tifrunner.gnm1.ann1.T3TR42 Arachis hypogaea HOM05D004733 ORTHO05D005925 2.1e-59 235.3 503 31.4
Ca_24844_v3 Cicer arietinum L. HOM05D004733 ORTHO05D005925 4.6e-59 234.2 295 43.1
Hma1.2p1_0400F.1_g144360 Hydrangea macrophylla HOM05D004733 ORTHO05D005925 2.3e-58 231.9 192 57.8
C07p61790 Brassica napus HOM05D004733 ORTHO05D005925 2.8e-56 224.9 411 37.5
CAN.G358.90 Capsicum annuum HOM05D004733 ORTHO05D005925 6.4e-53 213.8 201 48.3
PRCOL_00003562 Prasinoderma coloniale HOM05D004733 ORTHO05D005925 3.2e-52 211.5 1172 24.0
HPP92_009475 Vanilla planifolia HOM05D004733 ORTHO05D005925 9.2e-52 209.9 186 51.6
A05p29770 Brassica napus HOM05D004733 ORTHO05D005925 1.6e-48 199.1 233 46.4
Thhalv10021392m.g Eutrema salsugineum HOM05D004733 ORTHO05D005925 6.4e-45 187.2 316 35.4
Phvul.011G118815 Phaseolus vulgaris HOM05D004733 ORTHO05D005925 1.1e-41 176.4 148 56.1
QL02p065474 Quercus lobata HOM05D004733 ORTHO05D005925 6.2e-40 170.6 121 68.6
AagrBONN_evm.TU.Sc2ySwM_228.917 Anthoceros agrestis HOM05D004733 ORTHO05D005925 2.2e-37 162.2 188 44.7
A05p29560 Brassica napus HOM05D004733 ORTHO05D005925 1.9e-33 149.1 176 45.5
QL06p046242 Quercus lobata HOM05D004733 ORTHO05D005925 9.0e-31 140.2 101 64.4
C07p61800 Brassica napus HOM05D004733 ORTHO05D005925 1.3e-24 119.8 90 60.0
TPR.G23227 Trifolium pratense HOM05D004733 ORTHO05D006027 3.7e-24 118.2 83 67.5
Aa31LG3G3770 Aethionema arabicum HOM05D004733 ORTHO05D005925 4.8e-24 117.9 111 54.1
Psat4g132320 Pisum sativum HOM05D004733 ORTHO05D010533 3.4e-22 111.7 154 40.9
Haze_15083 Corylus avellana HOM05D004733 ORTHO05D005925 2.2e-21 109.0 104 52.9
Medtr1g110810 Medicago truncatula HOM05D004733 ORTHO05D005925 1.5e-17 96.3 153 37.3
TPR.G36480 Trifolium pratense HOM05D004733 ORTHO05D008348 5.7e-17 94.4 71 57.7
C05p48270 Brassica napus HOM05D004733 ORTHO05D005925 2.2e-16 92.4 124 41.9
Lj1g0009863 Lotus japonicus HOM05D004733 ORTHO05D001264 1.1e-15 90.1 75 60.0
Lsat_1_v5_gn_5_99100 Lactuca sativa HOM05D000032 ORTHO05D015646 4.1e-15 88.2 51 80.4
Lsat_1_v5_gn_8_95521 Lactuca sativa HOM05D000640 ORTHO05D036440 1.2e-14 86.7 52 80.8
arahy.Tifrunner.gnm1.ann1.1JA7FP Arachis hypogaea HOM05D004733 ORTHO05D005925 1.5e-14 86.3 64 62.5
RcHm_v2.0_Chr5g0064711 Rosa chinensis HOM05D004733 ORTHO05D005925 5.9e-14 84.3 148 33.8
Cc03_g11510 Coffea canephora HOM05D004733 ORTHO05D005925 2.1e-11 75.9 64 48.4
QL06p046224 Quercus lobata HOM05D004733 ORTHO05D005925 2.3e-10 72.4 81 42.0
A05p29540 Brassica napus HOM05D004733 ORTHO05D005925 6.7e-10 70.9 76 47.4
Psat2g060920 Pisum sativum HOM05D001085 ORTHO05D000895 1.8e-07 62.8 56 51.8


User provided reference genes

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