Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA232G2224 Erigeron canadensis HOM05D005107 ORTHO05D006200 2.9e-134 481.9 240 100.0
ECA232G4933 Erigeron canadensis HOM05D005107 ORTHO05D006200 3.9e-131 471.5 240 97.5
Hma1.2p1_0592F.1_g185565 Hydrangea macrophylla HOM05D005107 ORTHO05D006200 4.7e-60 235.3 237 50.2
GSVIVG01007704001 Vitis vinifera HOM05D005107 ORTHO05D006200 1.1e-59 234.2 244 50.0
HanXRQChr08g0235041 Helianthus annuus HOM05D005107 ORTHO05D006200 2.3e-54 216.5 238 46.6
Dinv20630 Davidia involucrata HOM05D005107 ORTHO05D006200 3.0e-54 216.1 240 47.5
Nitab4.5_0003229g0090 Nicotiana tabacum HOM05D005107 ORTHO05D006200 7.3e-53 211.5 241 45.6
CSS0014290 Camellia sinensis var. sinensis HOM05D005107 ORTHO05D006200 9.6e-53 211.1 237 46.8
Nitab4.5_0001207g0070 Nicotiana tabacum HOM05D005107 ORTHO05D006200 9.6e-53 211.1 240 45.8
ECA246G1934 Erigeron canadensis HOM05D005107 ORTHO05D006200 1.6e-52 210.3 231 48.9
HanXRQChr05g0154601 Helianthus annuus HOM05D005107 ORTHO05D006200 2.1e-52 209.9 243 48.6
CSS0028022 Camellia sinensis var. sinensis HOM05D005107 ORTHO05D006200 4.8e-52 208.8 237 46.0
CSS0000196 Camellia sinensis var. sinensis HOM05D005107 ORTHO05D006200 2.4e-51 206.5 239 44.4
Atru.chr9.2518 Acer truncatum HOM05D005107 ORTHO05D006200 9.0e-51 204.5 243 44.9
Hma1.2p1_0046F.1_g026720 Hydrangea macrophylla HOM05D005107 ORTHO05D006200 1.2e-50 204.1 241 45.6
Haze_07542 Corylus avellana HOM05D005107 ORTHO05D006200 2.6e-50 203.0 245 42.9
Lsat_1_v5_gn_5_15301 Lactuca sativa HOM05D005107 ORTHO05D006200 2.6e-50 203.0 236 49.2
PGSC0003DMG401018164 Solanum tuberosum HOM05D005107 ORTHO05D006200 2.6e-50 203.0 240 44.2
Sabra12G0063800 Salix brachista HOM05D005107 ORTHO05D006200 3.4e-50 202.6 242 44.6
Sopen03g031750 Solanum pennellii HOM05D005107 ORTHO05D006200 3.4e-50 202.6 240 43.8
Potri.012G088600 Populus trichocarpa HOM05D005107 ORTHO05D006200 4.5e-50 202.2 242 45.0
QL10p008945 Quercus lobata HOM05D005107 ORTHO05D006200 4.5e-50 202.2 250 44.4
Solyc03g112670.3 Solanum lycopersicum HOM05D005107 ORTHO05D006200 5.8e-50 201.8 240 43.8
Cpa.g.sc153.5 Carica papaya HOM05D005107 ORTHO05D006200 1.3e-49 200.7 242 45.0
Migut.O00123 Erythranthe guttata HOM05D005107 ORTHO05D006200 1.7e-49 200.3 241 44.0
Lj5A126T86 Lonicera japonica HOM05D005107 ORTHO05D006200 4.9e-49 198.7 237 43.9
TWI14G0467 Tripterygium wilfordii HOM05D005107 ORTHO05D006200 6.4e-49 198.4 242 44.2
Manes.14G063800 Manihot esculenta HOM05D005107 ORTHO05D006200 3.2e-48 196.1 243 44.0
Oeu016417.1 Olea europaea HOM05D005107 ORTHO05D006200 5.4e-48 195.3 233 42.5
TAR374G1030 Trochodendron aralioides HOM05D005107 ORTHO05D006200 5.4e-48 195.3 241 43.6
CiPaw.11G023500 Carya illinoinensis HOM05D005107 ORTHO05D006200 9.3e-48 194.5 238 46.2
MD06G1170900 Malus domestica HOM05D005107 ORTHO05D006200 1.6e-47 193.7 247 44.5
CAN.G1166.21 Capsicum annuum HOM05D005107 ORTHO05D006200 2.7e-47 193.0 240 44.2
Ciclev10021009m.g Citrus clementina HOM05D005107 ORTHO05D006200 2.7e-47 193.0 237 43.0
TWI23G1004 Tripterygium wilfordii HOM05D005107 ORTHO05D006200 2.7e-47 193.0 243 44.4
Peaxi162Scf00089g01740 Petunia axillaris HOM05D005107 ORTHO05D006200 3.5e-47 192.6 239 41.8
Potri.015G079700 Populus trichocarpa HOM05D005107 ORTHO05D006200 4.6e-47 192.2 243 42.4
SalBow5G2679 Salvia bowleyana HOM05D005107 ORTHO05D006200 4.6e-47 192.2 240 42.9
RcHm_v2.0_Chr7g0193181 Rosa chinensis HOM05D005107 ORTHO05D006200 6.0e-47 191.8 245 43.7
Thecc.03G018700 Theobroma cacao HOM05D005107 ORTHO05D006200 6.0e-47 191.8 244 42.6
Glyma.06G180400 Glycine max HOM05D005107 ORTHO05D006200 7.9e-47 191.4 234 44.0
MD14G1176600 Malus domestica HOM05D005107 ORTHO05D006200 7.9e-47 191.4 245 42.0
Nn4g22685 Nelumbo nucifera HOM05D005107 ORTHO05D006200 1.3e-46 190.7 236 41.1
Nn4g22690 Nelumbo nucifera HOM05D005107 ORTHO05D006200 1.3e-46 190.7 236 41.1
Sc22g0001200 Simmondsia chinensis HOM05D005107 ORTHO05D006200 1.8e-46 190.3 240 42.1
Prupe.5G170500 Prunus persica HOM05D005107 ORTHO05D006200 2.3e-46 189.9 245 43.3
FvH4_5g05630 Fragaria vesca HOM05D005107 ORTHO05D006200 3.0e-46 189.5 245 43.3
FAN18G1528 Fragaria x ananassa HOM05D005107 ORTHO05D006200 3.0e-46 189.5 245 43.3
DCAR_016047 Daucus carota HOM05D005107 ORTHO05D006200 3.9e-46 189.1 218 40.8
Sabra15G0104000 Salix brachista HOM05D005107 ORTHO05D006200 3.9e-46 189.1 242 42.6
Cc06_g17290 Coffea canephora HOM05D005107 ORTHO05D006200 8.7e-46 188.0 241 44.8
Lj4g0022030 Lotus japonicus HOM05D005107 ORTHO05D006200 1.9e-45 186.8 242 39.3
FAN04G1011 Fragaria x ananassa HOM05D005107 ORTHO05D006200 2.5e-45 186.4 245 42.0
Manes.06G107100 Manihot esculenta HOM05D005107 ORTHO05D006200 2.5e-45 186.4 239 43.9
Aqoxy3G02846 Aquilegia oxysepala HOM05D005107 ORTHO05D006200 4.3e-45 185.7 244 41.4
Duzib205G0074 Durio zibethinus HOM05D005107 ORTHO05D006200 4.3e-45 185.7 250 40.8
Glyma.04G185700 Glycine max HOM05D005107 ORTHO05D006200 4.3e-45 185.7 234 41.9
Nn2g12593 Nelumbo nucifera HOM05D005107 ORTHO05D006200 4.3e-45 185.7 237 41.4
VMungo1309G0437 Vigna mungo HOM05D005107 ORTHO05D006200 4.3e-45 185.7 234 41.0
Eucgr.B00249 Eucalyptus grandis HOM05D005107 ORTHO05D006200 5.6e-45 185.3 240 40.4
Gohir.D07G068200 Gossypium hirsutum HOM05D005107 ORTHO05D006200 7.4e-45 184.9 242 39.3
Gorai.001G071700 Gossypium raimondii HOM05D005107 ORTHO05D006200 7.4e-45 184.9 242 40.1
AUR62018143 Chenopodium quinoa HOM05D005107 ORTHO05D006200 9.6e-45 184.5 242 42.6
FAN08G1807 Fragaria x ananassa HOM05D005107 ORTHO05D006200 9.6e-45 184.5 246 43.5
Lj1g0017341 Lotus japonicus HOM05D005107 ORTHO05D006200 9.6e-45 184.5 233 41.2
CANSAT80G2623 Cannabis sativa HOM05D005107 ORTHO05D006200 1.3e-44 184.1 246 39.4
MSTRG.23144 Avicennia marina HOM05D005107 ORTHO05D006200 1.6e-44 183.7 240 41.7
Phvul.009G176100 Phaseolus vulgaris HOM05D005107 ORTHO05D006200 1.6e-44 183.7 234 39.7
PGR083G1692 Punica granatum HOM05D005107 ORTHO05D006200 4.8e-44 182.2 241 39.0
Gohir.A07G063500 Gossypium hirsutum HOM05D005107 ORTHO05D006200 6.2e-44 181.8 242 40.1
COL.COLO4_30099 Corchorus olitorius HOM05D005107 ORTHO05D006200 8.1e-44 181.4 242 40.9
Peaxi162Scf00255g00912 Petunia axillaris HOM05D005107 ORTHO05D006200 8.1e-44 181.4 241 38.6
AUR62042560 Chenopodium quinoa HOM05D005107 ORTHO05D006200 1.8e-43 180.3 245 42.0
Ah.10g031930 Amaranthus hybridus HOM05D005107 ORTHO05D006200 3.1e-43 179.5 237 42.2
Gohir.A12G272600 Gossypium hirsutum HOM05D005107 ORTHO05D006200 4.0e-43 179.1 243 39.9
Gohir.D12G273300 Gossypium hirsutum HOM05D005107 ORTHO05D006200 4.0e-43 179.1 243 40.3
Gorai.008G293700 Gossypium raimondii HOM05D005107 ORTHO05D006200 4.0e-43 179.1 243 40.3
Lj9C446G12 Lonicera japonica HOM05D004430 ORTHO05D005088 6.9e-43 178.3 241 39.8
Sed0009116 Sechium edule HOM05D005107 ORTHO05D006200 6.9e-43 178.3 220 45.5
Ca_16156_v3 Cicer arietinum L. HOM05D005107 ORTHO05D006200 9.0e-43 177.9 233 40.8
EL10Ac2g03054 Beta vulgaris HOM05D005107 ORTHO05D006200 1.2e-42 177.6 243 39.9
MBI10_g44387_MAGBIO Magnolia biondii HOM05D005107 ORTHO05D006200 1.5e-42 177.2 244 42.2
PSO063G3062 Papaver somniferum HOM05D005107 ORTHO05D006200 1.5e-42 177.2 239 40.2
ClCG01G013290 Citrullus lanatus HOM05D005107 ORTHO05D006200 2.0e-42 176.8 221 44.8
Ca_21938_v3 Cicer arietinum L. HOM05D005107 ORTHO05D006200 2.6e-42 176.4 242 37.2
TAR622G1391 Trochodendron aralioides HOM05D005107 ORTHO05D006200 4.5e-42 175.6 247 41.7
SalBow6G4644 Salvia bowleyana HOM05D005107 ORTHO05D006200 5.8e-42 175.3 239 39.7
TWI39G0316 Tripterygium wilfordii HOM05D005107 ORTHO05D006200 7.6e-42 174.9 246 41.9
arahy.Tifrunner.gnm1.ann1.5AH6W7 Arachis hypogaea HOM05D005107 ORTHO05D006200 1.3e-41 174.1 242 36.8
MELO3C002281.2 Cucumis melo HOM05D005107 ORTHO05D006200 1.3e-41 174.1 221 43.9
Sp2g26180 Schrenkiella parvula HOM05D005107 ORTHO05D006200 2.2e-41 173.3 251 38.6
PSO832G2872 Papaver somniferum HOM05D005107 ORTHO05D006200 3.8e-41 172.6 239 39.7
Medtr4g105500 Medicago truncatula HOM05D005107 ORTHO05D006200 8.4e-41 171.4 242 36.4
AL8G40070 Arabidopsis lyrata HOM05D005107 ORTHO05D006200 1.1e-40 171.0 251 39.0
arahy.Tifrunner.gnm1.ann1.6379ZA Arachis hypogaea HOM05D005107 ORTHO05D006200 1.1e-40 171.0 242 36.4
Psat4g058600 Pisum sativum HOM05D005107 ORTHO05D006200 1.1e-40 171.0 242 36.4
BcaB04g19949 Brassica carinata HOM05D005107 ORTHO05D006200 1.4e-40 170.6 251 38.6
TPR.G37531 Trifolium pratense HOM05D005107 ORTHO05D006200 1.4e-40 170.6 242 35.5
CARHR276850 Cardamine hirsuta HOM05D005107 ORTHO05D006200 2.4e-40 169.9 255 37.6
Carub.0008s2376 Capsella rubella HOM05D005107 ORTHO05D006200 4.2e-40 169.1 251 37.5
Migut.D01962 Erythranthe guttata HOM05D005107 ORTHO05D006200 4.2e-40 169.1 233 40.8
VMungo1215G1987 Vigna mungo HOM05D005107 ORTHO05D006200 4.2e-40 169.1 237 37.6
Phvul.003G202200 Phaseolus vulgaris HOM05D005107 ORTHO05D006200 5.5e-40 168.7 242 38.0
Psat5g115520 Pisum sativum HOM05D005107 ORTHO05D006200 9.3e-40 167.9 233 39.1
C09p09050 Brassica napus HOM05D005107 ORTHO05D006200 1.2e-39 167.5 257 38.1
BolC9t53818H Brassica oleracea HOM05D005107 ORTHO05D006200 1.2e-39 167.5 257 38.1
Oeu024703.1 Olea europaea HOM05D005107 ORTHO05D006200 2.1e-39 166.8 197 45.2
AT5G63050 Arabidopsis thaliana HOM05D005107 ORTHO05D006200 2.7e-39 166.4 251 37.8
A09p08000 Brassica napus HOM05D005107 ORTHO05D006200 2.7e-39 166.4 257 38.1
Thhalv10004512m.g Eutrema salsugineum HOM05D005107 ORTHO05D006200 2.7e-39 166.4 251 39.0
Lalb_Chr08g0236621 Lupinus albus HOM05D005107 ORTHO05D006200 3.5e-39 166.0 234 38.9
BraA09t36452Z Brassica rapa HOM05D005107 ORTHO05D006200 4.6e-39 165.6 257 38.1
Actinidia19110 Actinidia chinensis HOM05D005107 ORTHO05D006200 6.0e-39 165.2 227 39.2
Aa31LG11G620 Aethionema arabicum HOM05D005107 ORTHO05D006200 1.0e-38 164.5 249 36.9
A06p29810 Brassica napus HOM05D005107 ORTHO05D006200 6.7e-38 161.8 251 36.7
THA.LOC104821481 Tarenaya hassleriana HOM05D005107 ORTHO05D006200 1.1e-37 161.0 240 35.8
unitig_26.g9615 Utricularia gibba HOM05D005107 ORTHO05D006200 1.9e-37 160.2 241 35.3
BraA06t25929Z Brassica rapa HOM05D005107 ORTHO05D006200 3.3e-37 159.5 251 36.7
BolC3t18614H Brassica oleracea HOM05D005107 ORTHO05D006200 1.3e-36 157.5 248 37.5
TPR.G14919 Trifolium pratense HOM05D005107 ORTHO05D006200 1.6e-36 157.1 235 38.7
Sed0010155 Sechium edule HOM05D005107 ORTHO05D006200 6.2e-36 155.2 217 40.6
THA.LOC104818212 Tarenaya hassleriana HOM05D005107 ORTHO05D006200 1.1e-35 154.5 241 36.5
Medtr3g077490 Medicago truncatula HOM05D005107 ORTHO05D006200 1.4e-35 154.1 234 37.2
Dinv38563 Davidia involucrata HOM05D003072 ORTHO05D008464 1.8e-35 153.7 157 49.0
FAN13G2858 Fragaria x ananassa HOM05D005107 ORTHO05D008464 3.1e-35 152.9 235 38.3
FAN18G1595 Fragaria x ananassa HOM05D005107 ORTHO05D008464 5.3e-35 152.1 228 39.0
C08p32660 Brassica napus HOM05D005107 ORTHO05D006200 6.9e-35 151.8 229 39.3
BolC8t50877H Brassica oleracea HOM05D005107 ORTHO05D006200 6.9e-35 151.8 229 39.3
CsaV3_1G008660 Cucumis sativus L. HOM05D005107 ORTHO05D006200 9.0e-35 151.4 220 42.3
ClCG06G017120 Citrullus lanatus HOM05D005107 ORTHO05D006200 1.0e-33 147.9 248 33.5
BcaC01g02550 Brassica carinata HOM05D005107 ORTHO05D006200 4.9e-33 145.6 246 35.4
HanXRQChr02g0035961 Helianthus annuus HOM05D005107 ORTHO05D006200 1.2e-31 141.0 224 39.7
Hund13172 Selenicereus undatus HOM05D005107 ORTHO05D006200 4.6e-31 139.0 229 34.1
Lsat_1_v5_gn_1_28200 Lactuca sativa HOM05D005107 ORTHO05D006200 1.0e-30 137.9 191 43.5
SGA_v2.0_scaffold90G27886 Striga asiatica HOM05D005107 ORTHO05D006200 2.3e-30 136.7 211 34.1
CiPaw.12G028400 Carya illinoinensis HOM05D005107 ORTHO05D006200 3.9e-30 136.0 167 42.5
HPP92_001300 Vanilla planifolia HOM05D005107 ORTHO05D006200 3.3e-29 132.9 242 33.9
CDE05G1562 Ceratophyllum demersum HOM05D005107 ORTHO05D006200 4.3e-29 132.5 243 33.7
MELO3C026284.2 Cucumis melo HOM05D005107 ORTHO05D006200 4.3e-29 132.5 248 33.1
Eucgr.J01240 Eucalyptus grandis HOM05D005107 ORTHO05D006200 9.7e-29 131.3 137 47.4
Eucgr.C04410 Eucalyptus grandis HOM05D005107 ORTHO05D006200 3.8e-25 119.4 137 45.3
Eucgr.C03135 Eucalyptus grandis HOM05D005107 ORTHO05D006200 2.1e-23 113.6 129 43.4
C03p63570 Brassica napus HOM05D005107 ORTHO05D006200 5.1e-22 109.0 189 34.4
BcaB02g09719 Brassica carinata HOM05D005107 ORTHO05D006200 3.2e-16 89.7 255 30.2
BcaC04g23368 Brassica carinata HOM05D005107 ORTHO05D006200 8.8e-14 81.6 103 40.8


User provided reference genes

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