Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA232G2222 Erigeron canadensis HOM05D004723 ORTHO05D006176 0.0e+00 1210.3 676 100.0
HanXRQChr09g0257321 Helianthus annuus HOM05D004723 ORTHO05D006176 1.5e-244 849.7 702 74.1
Lsat_1_v5_gn_4_144101 Lactuca sativa HOM05D004723 ORTHO05D006176 3.3e-199 699.1 705 61.7
Lj4A224T28 Lonicera japonica HOM05D004723 ORTHO05D006176 5.3e-173 612.1 716 58.4
GSVIVG01007226001 Vitis vinifera HOM05D004723 ORTHO05D006176 7.1e-170 601.7 675 53.8
Manes.10G142700 Manihot esculenta HOM05D004723 ORTHO05D006176 3.0e-168 596.3 693 54.5
Cc07_g11220 Coffea canephora HOM05D004723 ORTHO05D006176 2.1e-166 590.1 680 54.4
Atru.chr3.886 Acer truncatum HOM05D004723 ORTHO05D006176 8.1e-166 588.2 680 54.4
Atru.chr3.897 Acer truncatum HOM05D004723 ORTHO05D006176 8.1e-166 588.2 680 54.4
Nitab4.5_0006899g0060 Nicotiana tabacum HOM05D004723 ORTHO05D006176 5.8e-164 582.0 708 54.9
DCAR_024713 Daucus carota HOM05D004723 ORTHO05D006176 2.2e-163 580.1 724 54.6
Nn5g30820 Nelumbo nucifera HOM05D004723 ORTHO05D006176 1.2e-161 574.3 689 50.7
Sed0008382 Sechium edule HOM05D004723 ORTHO05D006176 1.2e-161 574.3 684 55.6
Eucgr.I02314 Eucalyptus grandis HOM05D004723 ORTHO05D006176 3.0e-160 569.7 674 55.2
TWI09G0244 Tripterygium wilfordii HOM05D004723 ORTHO05D006176 3.9e-160 569.3 678 55.9
CSS0036730 Camellia sinensis var. sinensis HOM05D004723 ORTHO05D006176 1.1e-157 561.2 659 55.1
QL06p051414 Quercus lobata HOM05D004723 ORTHO05D006176 1.1e-157 561.2 690 55.9
MSTRG.10980 Avicennia marina HOM05D004723 ORTHO05D006176 2.4e-157 560.1 672 52.2
Nitab4.5_0001789g0050 Nicotiana tabacum HOM05D004723 ORTHO05D006176 1.5e-156 557.4 703 54.5
Gorai.012G044400 Gossypium raimondii HOM05D004723 ORTHO05D006176 4.2e-154 549.3 677 55.7
ClCG05G000690 Citrullus lanatus HOM05D004723 ORTHO05D006176 5.1e-152 542.3 695 50.5
CSS0012813 Camellia sinensis var. sinensis HOM05D004723 ORTHO05D006176 6.7e-152 542.0 683 52.6
Ciclev10025027m.g Citrus clementina HOM05D004723 ORTHO05D006176 8.7e-152 541.6 677 54.8
Haze_03712 Corylus avellana HOM05D004723 ORTHO05D006176 1.1e-151 541.2 691 52.1
CiPaw.07G062200 Carya illinoinensis HOM05D004723 ORTHO05D006176 1.5e-151 540.8 680 52.9
MELO3C006009.2 Cucumis melo HOM05D004723 ORTHO05D006176 4.3e-151 539.3 683 52.4
Solyc02g083470.3 Solanum lycopersicum HOM05D004723 ORTHO05D006176 4.3e-151 539.3 709 53.3
PGSC0003DMG400003588 Solanum tuberosum HOM05D004723 ORTHO05D006176 9.6e-151 538.1 704 52.8
Peaxi162Scf00198g00136 Petunia axillaris HOM05D004723 ORTHO05D006176 4.8e-150 535.8 677 53.9
Cfa007019 Carpinus fangiana HOM05D004723 ORTHO05D006176 1.8e-149 533.9 686 52.3
Potri.005G108800 Populus trichocarpa HOM05D004723 ORTHO05D006176 2.4e-149 533.5 695 54.1
Sopen02g028260 Solanum pennellii HOM05D004723 ORTHO05D006176 1.2e-148 531.2 711 52.6
Actinidia35669 Actinidia chinensis HOM05D004723 ORTHO05D006176 3.4e-148 529.6 685 54.5
Gohir.A05G376600 Gossypium hirsutum HOM05D004723 ORTHO05D006176 3.4e-148 529.6 681 53.7
TAR628G1348 Trochodendron aralioides HOM05D004723 ORTHO05D006176 3.4e-148 529.6 616 56.8
Thecc.08G139800 Theobroma cacao HOM05D004723 ORTHO05D006176 1.7e-147 527.3 687 53.3
Sabra05G0089200 Salix brachista HOM05D004723 ORTHO05D006176 2.2e-147 526.9 706 52.3
Duzib147G1420 Durio zibethinus HOM05D004723 ORTHO05D006176 2.9e-147 526.6 676 51.5
arahy.Tifrunner.gnm1.ann1.DG5MW5 Arachis hypogaea HOM05D004723 ORTHO05D006176 5.0e-147 525.8 685 54.7
Prupe.7G173800 Prunus persica HOM05D004723 ORTHO05D006176 4.2e-146 522.7 680 53.4
Sc07g0001170 Simmondsia chinensis HOM05D004723 ORTHO05D006176 4.2e-146 522.7 681 52.6
CAN.G890.41 Capsicum annuum HOM05D004723 ORTHO05D006176 2.7e-145 520.0 547 56.1
CsaV3_3G007910 Cucumis sativus L. HOM05D004723 ORTHO05D006176 7.4e-143 511.9 684 51.8
Rhsim08G0030800 Rhododendron simsii HOM05D004723 ORTHO05D006176 1.3e-142 511.1 642 52.8
Hund14070 Selenicereus undatus HOM05D004723 ORTHO05D006176 1.1e-141 508.1 618 57.4
PGR119G2074 Punica granatum HOM05D004723 ORTHO05D006176 1.8e-141 507.3 696 50.3
VMungo0251G3240 Vigna mungo HOM05D004723 ORTHO05D006176 4.5e-140 502.7 698 49.6
PSO675G8954 Papaver somniferum HOM05D004723 ORTHO05D006176 1.3e-139 501.1 687 48.5
arahy.Tifrunner.gnm1.ann1.7VD04T Arachis hypogaea HOM05D004723 ORTHO05D006176 2.2e-139 500.4 685 53.1
MD02G1124600 Malus domestica HOM05D004723 ORTHO05D006176 1.1e-138 498.0 625 56.2
Migut.F01827 Erythranthe guttata HOM05D004723 ORTHO05D006176 1.4e-138 497.7 527 56.5
EL10Ac6g15170 Beta vulgaris HOM05D004723 ORTHO05D006176 1.9e-138 497.3 703 52.2
Lalb_Chr16g0391491 Lupinus albus HOM05D004723 ORTHO05D006176 2.5e-138 496.9 694 51.4
PSO541G1155 Papaver somniferum HOM05D004723 ORTHO05D006176 7.2e-138 495.4 690 50.4
Glyma.16G122800 Glycine max HOM05D004723 ORTHO05D006176 3.9e-136 489.6 670 50.4
Aqoxy6G02087 Aquilegia oxysepala HOM05D004723 ORTHO05D006176 6.7e-136 488.8 756 47.9
Glyma.02G045200 Glycine max HOM05D004723 ORTHO05D006176 8.8e-136 488.4 686 51.2
unitig_22.g6210 Utricularia gibba HOM05D004119 ORTHO05D004797 1.7e-134 484.2 686 50.0
Cpa.g.sc6.304 Carica papaya HOM05D004723 ORTHO05D006176 3.7e-134 483.0 722 51.5
Phvul.003G266400 Phaseolus vulgaris HOM05D004723 ORTHO05D006176 1.4e-133 481.1 690 49.7
Ca_18264_v3 Cicer arietinum L. HOM05D004723 ORTHO05D006176 6.5e-131 472.2 676 50.6
Psat7g090000 Pisum sativum HOM05D004723 ORTHO05D006176 6.5e-131 472.2 680 49.3
Lj4g0028127 Lotus japonicus HOM05D004723 ORTHO05D006176 4.2e-130 469.5 681 51.0
SGA_v2.0_scaffold111G31425 Striga asiatica HOM05D004723 ORTHO05D006176 1.6e-129 467.6 566 54.8
Oeu005338.2 Olea europaea HOM05D004723 ORTHO05D006176 2.7e-129 466.8 734 48.5
RcHm_v2.0_Chr2g0098611 Rosa chinensis HOM05D004723 ORTHO05D006176 3.6e-129 466.5 684 50.4
CANSAT25G3056 Cannabis sativa HOM05D004723 ORTHO05D006176 6.1e-129 465.7 679 46.7
AL3G11100 Arabidopsis lyrata HOM05D004723 ORTHO05D006176 7.9e-129 465.3 644 50.3
AT3G01160 Arabidopsis thaliana HOM05D004723 ORTHO05D006176 5.1e-128 462.6 683 47.9
FAN26G3228 Fragaria x ananassa HOM05D004723 ORTHO05D006176 2.0e-127 460.7 667 49.3
Medtr4g096820 Medicago truncatula HOM05D004723 ORTHO05D006176 7.4e-127 458.8 685 48.3
FAN19G1371 Fragaria x ananassa HOM05D004723 ORTHO05D006176 1.8e-125 454.1 660 51.2
AUR62003701 Chenopodium quinoa HOM05D004723 ORTHO05D006176 3.1e-125 453.4 711 47.3
FvH4_1g11200 Fragaria vesca HOM05D004723 ORTHO05D006176 1.3e-123 448.0 661 50.8
Gohir.1Z049326 Gossypium hirsutum HOM05D004723 ORTHO05D006176 1.7e-123 447.6 678 49.4
vmacro18436 Vaccinium macrocarpon HOM05D004723 ORTHO05D006176 2.1e-121 440.7 697 45.1
AUR62018009 Chenopodium quinoa HOM05D004723 ORTHO05D006176 6.1e-121 439.1 531 53.7
Sp3g00960 Schrenkiella parvula HOM05D004723 ORTHO05D006176 2.4e-117 427.2 641 48.0
Aa31LG5G12460 Aethionema arabicum HOM05D004723 ORTHO05D006176 2.0e-116 424.1 700 47.0
Dinv40130 Davidia involucrata HOM05D004723 ORTHO05D006176 1.0e-115 421.8 310 72.6
Ah.01g003790 Amaranthus hybridus HOM05D004723 ORTHO05D006176 2.9e-115 420.2 681 46.7
Thhalv10020182m.g Eutrema salsugineum HOM05D004723 ORTHO05D006176 6.5e-115 419.1 690 47.1
BraA05t23177Z Brassica rapa HOM05D004723 ORTHO05D006176 2.7e-113 413.7 649 48.7
FAN23G0842 Fragaria x ananassa HOM05D004723 ORTHO05D006176 2.3e-112 410.6 616 48.4
A05p44800 Brassica napus HOM05D004723 ORTHO05D006176 3.4e-111 406.8 651 48.2
SEGI_08029 Sequoiadendron giganteum HOM05D004723 ORTHO05D006176 1.1e-109 401.7 519 52.8
ATR0665G361 Amborella trichopoda HOM05D004723 ORTHO05D006176 5.4e-109 399.4 529 52.2
Carub.0003s0100 Capsella rubella HOM05D004723 ORTHO05D006176 1.1e-106 391.7 705 45.8
BcaC05g30387 Brassica carinata HOM05D004723 ORTHO05D006176 2.5e-106 390.6 629 47.7
CARHR075890 Cardamine hirsuta HOM05D004723 ORTHO05D006176 3.6e-105 386.7 662 46.5
C09p75390 Brassica napus HOM05D004723 ORTHO05D006176 6.8e-104 382.5 627 46.9
BolC5t35121H Brassica oleracea HOM05D004723 ORTHO05D006176 2.7e-100 370.5 636 45.9
TPR.G4863 Trifolium pratense HOM05D004723 ORTHO05D006176 2.9e-99 367.1 523 48.8
Gohir.1Z049627 Gossypium hirsutum HOM05D004723 ORTHO05D006176 7.3e-98 362.5 421 58.0
Medtr4g073330 Medicago truncatula HOM05D004723 ORTHO05D006176 2.1e-97 360.9 662 42.6
SHI00027 Sapria himalayana HOM05D004723 ORTHO05D006176 3.6e-97 360.1 617 44.4
BcaC05g30489 Brassica carinata HOM05D004723 ORTHO05D006176 1.5e-95 354.8 627 45.5
AagrBONN_evm.TU.Sc2ySwM_117.2822 Anthoceros agrestis HOM05D004723 ORTHO05D006176 6.4e-94 349.4 708 38.0
Zm00001eb323180 Zea mays HOM05D004723 ORTHO05D006176 1.8e-93 347.8 701 40.7
Os07g0531700 Oryza sativa ssp. japonica HOM05D004723 ORTHO05D006176 2.7e-92 344.0 677 42.5
BcaC01g04506 Brassica carinata HOM05D004723 ORTHO05D006176 1.9e-90 337.8 683 37.6
SMO232G0062 Selaginella moellendorffii HOM05D004723 ORTHO05D006176 5.8e-87 326.2 637 39.2
CDE05G0976 Ceratophyllum demersum HOM05D004723 ORTHO05D006176 1.2e-84 318.5 378 52.1
SMO239G0207 Selaginella moellendorffii HOM05D004723 ORTHO05D006176 2.7e-84 317.4 594 38.7
AagrBONN_evm.TU.Sc2ySwM_368.2747 Anthoceros agrestis HOM05D004723 ORTHO05D006176 2.3e-80 304.3 726 35.0
Thecc.01G155000 Theobroma cacao HOM05D004723 ORTHO05D006176 1.3e-78 298.5 376 55.3
Pp3c17_7210 Physcomitrium patens HOM05D004723 ORTHO05D006176 1.6e-73 281.6 557 40.0
MD15G1238700 Malus domestica HOM05D004723 ORTHO05D006176 3.4e-71 273.9 317 58.0
Rhsim08G0030900 Rhododendron simsii HOM05D004723 ORTHO05D006176 1.3e-67 261.9 491 40.3
Mapoly0061s0018 Marchantia polymorpha HOM05D004723 ORTHO05D006176 1.5e-66 258.5 837 29.6
TAR628G1016 Trochodendron aralioides HOM05D004723 ORTHO05D005421 2.6e-63 247.7 216 62.5
HPP92_019125 Vanilla planifolia HOM05D004723 ORTHO05D006176 4.8e-57 226.9 201 59.7
CBR_g41392 Chara braunii HOM05D004723 ORTHO05D006176 9.6e-50 202.6 694 30.8
Gohir.D04G039432 Gossypium hirsutum HOM05D004723 ORTHO05D006176 3.6e-49 200.7 257 51.4
MD15G1238600 Malus domestica HOM05D004723 ORTHO05D006176 5.8e-47 193.4 276 50.0
C03p39900 Brassica napus HOM05D004723 ORTHO05D006176 1.3e-46 192.2 217 51.2
COL.COLO4_33606 Corchorus olitorius HOM05D004723 ORTHO05D006176 3.3e-42 177.6 248 53.6
PRCOL_00004947 Prasinoderma coloniale HOM05D004723 ORTHO05D006176 5.6e-42 176.8 636 29.4
Lsat_1_v5_gn_5_164041 Lactuca sativa HOM05D004723 ORTHO05D006176 1.3e-41 175.6 187 56.7
MCO13G085 Micromonas commoda HOM05D004723 ORTHO05D006176 1.1e-40 172.6 876 27.1
COL.COLO4_34179 Corchorus olitorius HOM05D004723 ORTHO05D006176 1.8e-40 171.8 521 30.5
CDE05G0343 Ceratophyllum demersum HOM05D004723 ORTHO05D006176 1.1e-37 162.5 255 48.2
Cre10.g452500 Chlamydomonas reinhardtii HOM05D004723 ORTHO05D006176 1.6e-36 158.7 468 32.7
TPR.G3121 Trifolium pratense HOM05D004723 ORTHO05D006176 2.7e-36 157.9 234 44.9
HPP92_019124 Vanilla planifolia HOM05D004723 ORTHO05D006176 4.1e-32 144.1 234 43.2
BolC3t16253H Brassica oleracea HOM05D004723 ORTHO05D006176 2.3e-27 128.3 118 58.5
TAR628G0893 Trochodendron aralioides HOM05D004723 ORTHO05D006176 5.7e-26 123.6 92 70.7
GSVIVG01005594001 Vitis vinifera HOM05D004723 ORTHO05D006176 1.4e-24 119.0 185 44.9
Medtr3g107350 Medicago truncatula HOM05D004723 ORTHO05D006176 6.9e-24 116.7 280 41.8
Dinv40131 Davidia involucrata HOM05D004723 ORTHO05D006176 2.0e-23 115.2 92 64.1
TPR.G330 Trifolium pratense HOM05D004723 ORTHO05D006176 3.6e-20 104.4 107 53.3
Oeu046870.1 Olea europaea HOM05D004723 ORTHO05D006176 7.9e-20 103.2 122 51.6
TPR.G36124 Trifolium pratense HOM05D004723 ORTHO05D006176 7.4e-18 96.7 92 54.3
Medtr3g107330 Medicago truncatula HOM05D004723 ORTHO05D006176 2.2e-17 95.1 99 49.5
TPR.G29970 Trifolium pratense HOM05D004723 ORTHO05D006176 6.3e-17 93.6 77 61.0
THA.LOC104821168 Tarenaya hassleriana HOM05D004723 ORTHO05D006176 2.4e-16 91.7 111 49.5
Thhalv10017085m.g Eutrema salsugineum HOM05D004723 ORTHO05D006176 1.5e-15 89.0 195 36.4
GSVIVG01005388001 Vitis vinifera HOM05D004723 ORTHO05D006176 7.7e-15 86.7 90 53.3
AagrBONN_evm.TU.Sc2ySwM_117.2819 Anthoceros agrestis HOM05D004723 ORTHO05D006176 2.9e-14 84.7 315 29.8
TPR.G21433 Trifolium pratense HOM05D004723 ORTHO05D006176 1.4e-13 82.4 186 36.6
Thecc.01G154900 Theobroma cacao HOM05D004723 ORTHO05D006176 6.1e-12 77.0 67 61.2
Actinidia28727 Actinidia chinensis HOM05D004723 ORTHO05D006176 1.1e-08 66.2 84 52.4
SEGI_25425 Sequoiadendron giganteum HOM05D004723 ORTHO05D006176 2.0e-07 62.0 148 36.5
Nn1g05556 Nelumbo nucifera HOM05D004723 ORTHO05D006176 3.5e-07 61.2 50 54.0
BolC3t16251H Brassica oleracea HOM05D004723 ORTHO05D019910 4.5e-07 60.8 83 49.4
BcaC01g04505 Brassica carinata HOM05D004723 ORTHO05D019910 7.7e-07 60.1 78 44.9
C03p39890 Brassica napus HOM05D004723 ORTHO05D019910 2.9e-06 58.2 72 51.4
C03p39770 Brassica napus HOM05D059891 ORTHO05D040930 6.5e-06 57.0 69 44.9
BolC3t16252H Brassica oleracea HOM05D004723 ORTHO05D006176 6.5e-06 57.0 77 44.2


User provided reference genes

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