Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA232G2122 Erigeron canadensis HOM05D004547 ORTHO05D005133 0.0e+00 1577.0 833 100.0
HanXRQChr16g0512771 Helianthus annuus HOM05D004547 ORTHO05D005133 0.0e+00 1434.9 834 90.8
Lsat_1_v5_gn_9_52061 Lactuca sativa HOM05D004547 ORTHO05D005133 0.0e+00 1421.8 834 89.9
Hma1.2p1_0432F.1_g151760 Hydrangea macrophylla HOM05D004547 ORTHO05D005133 0.0e+00 1281.9 838 78.9
Dinv28576 Davidia involucrata HOM05D004547 ORTHO05D005133 0.0e+00 1278.1 839 79.3
CSS0028755 Camellia sinensis var. sinensis HOM05D004547 ORTHO05D005133 0.0e+00 1275.4 839 79.5
Actinidia31780 Actinidia chinensis HOM05D004547 ORTHO05D005133 0.0e+00 1258.8 839 77.9
QL09p005748 Quercus lobata HOM05D004547 ORTHO05D005133 0.0e+00 1251.5 835 77.7
Ciclev10004313m.g Citrus clementina HOM05D004547 ORTHO05D005133 0.0e+00 1248.4 839 76.9
Lj1A979T84 Lonicera japonica HOM05D004547 ORTHO05D005133 0.0e+00 1246.1 839 77.9
CiPaw.03G093300 Carya illinoinensis HOM05D004547 ORTHO05D005133 0.0e+00 1243.0 840 76.8
GSVIVG01018659001 Vitis vinifera HOM05D004547 ORTHO05D005133 0.0e+00 1241.1 840 77.5
Prupe.2G277000 Prunus persica HOM05D004547 ORTHO05D005133 0.0e+00 1240.7 840 76.4
Thecc.03G155600 Theobroma cacao HOM05D004547 ORTHO05D005133 0.0e+00 1234.9 835 77.2
Duzib205G1908 Durio zibethinus HOM05D004547 ORTHO05D005133 0.0e+00 1227.6 835 76.3
Cpa.g.sc3.324 Carica papaya HOM05D004547 ORTHO05D005133 0.0e+00 1226.5 841 76.0
Cc02_g04280 Coffea canephora HOM05D004547 ORTHO05D005133 0.0e+00 1226.5 847 76.2
RcHm_v2.0_Chr1g0374281 Rosa chinensis HOM05D004547 ORTHO05D005133 0.0e+00 1226.5 839 75.8
Rhsim03G0167200 Rhododendron simsii HOM05D004547 ORTHO05D005133 0.0e+00 1224.5 840 76.4
Atru.chr1.728 Acer truncatum HOM05D004547 ORTHO05D005133 0.0e+00 1223.0 840 75.6
FAN03G1184 Fragaria x ananassa HOM05D004547 ORTHO05D005133 0.0e+00 1221.8 839 75.8
TAR375G0699 Trochodendron aralioides HOM05D004547 ORTHO05D005133 0.0e+00 1221.8 839 75.9
Cfa008167 Carpinus fangiana HOM05D004547 ORTHO05D005133 0.0e+00 1219.5 838 75.3
Oeu022486.1 Olea europaea HOM05D004547 ORTHO05D005133 0.0e+00 1219.1 840 75.7
FvH4_7g27490 Fragaria vesca HOM05D004547 ORTHO05D005133 0.0e+00 1218.4 839 75.7
CANSAT56G3837 Cannabis sativa HOM05D004547 ORTHO05D005133 0.0e+00 1216.8 839 75.2
Potri.003G109100 Populus trichocarpa HOM05D004547 ORTHO05D005133 0.0e+00 1216.1 837 76.3
FAN01G0567 Fragaria x ananassa HOM05D004547 ORTHO05D005133 0.0e+00 1214.9 839 75.6
PGR042G2008 Punica granatum HOM05D004547 ORTHO05D005133 0.0e+00 1214.5 840 74.9
Eucgr.A02893 Eucalyptus grandis HOM05D004547 ORTHO05D005133 0.0e+00 1212.2 840 75.1
Manes.06G134600 Manihot esculenta HOM05D004547 ORTHO05D005133 0.0e+00 1209.1 840 75.5
Migut.F00479 Erythranthe guttata HOM05D004547 ORTHO05D005133 0.0e+00 1207.6 840 74.6
Gorai.008G216000 Gossypium raimondii HOM05D004547 ORTHO05D005133 0.0e+00 1206.4 840 76.1
FAN06G1879 Fragaria x ananassa HOM05D004547 ORTHO05D005133 0.0e+00 1202.2 859 73.9
Gohir.D12G200900 Gossypium hirsutum HOM05D004547 ORTHO05D005133 0.0e+00 1201.4 840 75.7
THA.LOC104811522 Tarenaya hassleriana HOM05D004547 ORTHO05D005133 0.0e+00 1201.0 838 74.3
CsaV3_3G016130 Cucumis sativus L. HOM05D004547 ORTHO05D005133 0.0e+00 1200.3 834 75.1
Gohir.A12G198300 Gossypium hirsutum HOM05D004547 ORTHO05D005133 0.0e+00 1200.3 840 75.5
DCAR_020189 Daucus carota HOM05D004547 ORTHO05D005133 0.0e+00 1196.4 836 75.4
Sed0001089 Sechium edule HOM05D004547 ORTHO05D005133 0.0e+00 1196.0 834 74.0
MELO3C006811.2 Cucumis melo HOM05D004547 ORTHO05D005133 0.0e+00 1194.5 834 74.6
Carub.0008s1145 Capsella rubella HOM05D004547 ORTHO05D005133 0.0e+00 1191.0 837 73.6
Glyma.09G224000 Glycine max HOM05D004547 ORTHO05D005133 0.0e+00 1189.9 837 73.8
PGSC0003DMG400017618 Solanum tuberosum HOM05D004547 ORTHO05D005133 0.0e+00 1188.3 840 73.8
Lj3g0004511 Lotus japonicus HOM05D004547 ORTHO05D005133 0.0e+00 1187.6 836 74.0
arahy.Tifrunner.gnm1.ann1.TL2CDN Arachis hypogaea HOM05D004547 ORTHO05D005133 0.0e+00 1186.4 837 73.6
BcaB08g35501 Brassica carinata HOM05D004547 ORTHO05D005133 0.0e+00 1186.4 836 73.7
CARHR264160 Cardamine hirsuta HOM05D004547 ORTHO05D005133 0.0e+00 1184.5 837 73.0
Glyma.12G013000 Glycine max HOM05D004547 ORTHO05D005133 0.0e+00 1183.7 837 73.4
AT5G51430 Arabidopsis thaliana HOM05D004547 ORTHO05D005133 0.0e+00 1181.4 837 72.8
SalBow5G5604 Salvia bowleyana HOM05D004547 ORTHO05D005133 0.0e+00 1180.6 857 72.5
Sp6g13590 Schrenkiella parvula HOM05D004547 ORTHO05D005133 0.0e+00 1180.6 837 72.8
Medtr0004s0490 Medicago truncatula HOM05D004547 ORTHO05D005133 0.0e+00 1180.2 837 73.5
SalBow5G1900 Salvia bowleyana HOM05D004547 ORTHO05D005133 0.0e+00 1179.9 857 72.5
arahy.Tifrunner.gnm1.ann1.J7T2TK Arachis hypogaea HOM05D004547 ORTHO05D005133 0.0e+00 1178.7 837 73.4
Nn1g01023 Nelumbo nucifera HOM05D004547 ORTHO05D005133 0.0e+00 1178.7 839 73.5
ClCG05G007360 Citrullus lanatus HOM05D004547 ORTHO05D005133 0.0e+00 1175.6 827 74.2
Sopen05g002910 Solanum pennellii HOM05D004547 ORTHO05D005133 0.0e+00 1175.2 840 73.2
Sed0008837 Sechium edule HOM05D004547 ORTHO05D005133 0.0e+00 1174.8 834 73.4
AL8G25720 Arabidopsis lyrata HOM05D004547 ORTHO05D005133 0.0e+00 1174.5 837 72.4
Ca_19628_v3 Cicer arietinum L. HOM05D004547 ORTHO05D005133 0.0e+00 1173.3 838 73.3
BraA10t43010Z Brassica rapa HOM05D004547 ORTHO05D005133 0.0e+00 1172.9 837 73.4
VMungo1127G1242 Vigna mungo HOM05D004547 ORTHO05D005133 0.0e+00 1172.9 837 73.0
BcaC04g20676 Brassica carinata HOM05D004547 ORTHO05D005133 0.0e+00 1171.4 836 73.0
Aa31sc202G10 Aethionema arabicum HOM05D004547 ORTHO05D005133 0.0e+00 1169.5 834 72.3
MSTRG.8826 Avicennia marina HOM05D004547 ORTHO05D005133 0.0e+00 1169.1 840 72.9
A10p09340 Brassica napus HOM05D004547 ORTHO05D005133 0.0e+00 1167.9 837 73.2
Thhalv10012691m.g Eutrema salsugineum HOM05D004547 ORTHO05D005133 0.0e+00 1167.9 837 72.5
BolC9t56951H Brassica oleracea HOM05D004547 ORTHO05D005133 0.0e+00 1167.1 837 72.9
C09p40720 Brassica napus HOM05D004547 ORTHO05D005133 0.0e+00 1166.8 837 72.9
Phvul.011G016000 Phaseolus vulgaris HOM05D004547 ORTHO05D005133 0.0e+00 1164.1 837 72.4
Sabra03G0075600 Salix brachista HOM05D004547 ORTHO05D005133 0.0e+00 1163.7 930 68.2
C02p20480 Brassica napus HOM05D004547 ORTHO05D005133 0.0e+00 1161.0 836 71.8
Peaxi162Scf00023g01214 Petunia axillaris HOM05D004547 ORTHO05D005133 0.0e+00 1159.1 842 73.0
Nitab4.5_0004665g0060 Nicotiana tabacum HOM05D004547 ORTHO05D005133 0.0e+00 1158.3 840 72.4
A02p12350 Brassica napus HOM05D004547 ORTHO05D005133 0.0e+00 1157.1 835 72.2
PSO266G0090 Papaver somniferum HOM05D004547 ORTHO05D005133 0.0e+00 1150.6 851 72.7
Lalb_Chr03g0024271 Lupinus albus HOM05D004547 ORTHO05D005133 0.0e+00 1149.8 836 72.4
Aqoxy2G03231 Aquilegia oxysepala HOM05D004547 ORTHO05D005133 0.0e+00 1149.4 841 71.7
TWI39G0203 Tripterygium wilfordii HOM05D004547 ORTHO05D005133 0.0e+00 1148.7 838 71.8
PSO384G4058 Papaver somniferum HOM05D004547 ORTHO05D005133 0.0e+00 1144.0 851 72.6
Medtr6g005610 Medicago truncatula HOM05D004547 ORTHO05D005133 0.0e+00 1142.5 836 71.8
Sc14g0005530 Simmondsia chinensis HOM05D004547 ORTHO05D005133 0.0e+00 1141.7 836 72.1
CAN.G16.15 Capsicum annuum HOM05D004547 ORTHO05D005133 0.0e+00 1136.7 840 70.7
EL10Ac2g04890 Beta vulgaris HOM05D004547 ORTHO05D005133 0.0e+00 1127.9 842 70.0
vmacro06799 Vaccinium macrocarpon HOM05D004547 ORTHO05D005133 0.0e+00 1108.2 860 70.7
MD01G1182800 Malus domestica HOM05D004547 ORTHO05D005133 0.0e+00 1098.2 723 78.0
Hund13892 Selenicereus undatus HOM05D004547 ORTHO05D005133 0.0e+00 1096.6 805 71.1
Ah.10g036230 Amaranthus hybridus HOM05D004547 ORTHO05D005133 0.0e+00 1093.2 839 68.3
SGA_v2.0_scaffold44G16547 Striga asiatica HOM05D004547 ORTHO05D005133 0.0e+00 1092.4 997 61.6
ATR0317G078 Amborella trichopoda HOM05D004547 ORTHO05D005133 0.0e+00 1092.0 841 67.7
TAR374G0871 Trochodendron aralioides HOM05D004547 ORTHO05D005133 0.0e+00 1079.7 744 74.9
unitig_37.g11930 Utricularia gibba HOM05D004547 ORTHO05D005133 2.3e-311 1072.0 841 68.3
AUR62022938 Chenopodium quinoa HOM05D004547 ORTHO05D005133 9.6e-310 1066.6 857 66.2
TPR.G20262 Trifolium pratense HOM05D004547 ORTHO05D005133 3.1e-308 1061.6 839 68.1
AUR62012299 Chenopodium quinoa HOM05D004547 ORTHO05D005133 1.5e-307 1059.3 839 67.0
Medtr6g005670 Medicago truncatula HOM05D004547 ORTHO05D005133 1.3e-282 976.5 832 65.3
Psat0s2825g0040 Pisum sativum HOM05D004547 ORTHO05D005133 5.7e-278 961.1 682 73.2
Zm00001eb389950 Zea mays HOM05D004547 ORTHO05D005133 1.8e-276 956.1 719 69.0
Pp3c7_60 Physcomitrium patens HOM05D004547 ORTHO05D005133 2.0e-243 846.3 856 54.8
Mapoly0007s0274 Marchantia polymorpha HOM05D004547 ORTHO05D005133 2.0e-238 829.7 859 52.2
Hma1.2p1_0432F.1_g151750 Hydrangea macrophylla HOM05D004547 ORTHO05D005133 4.9e-237 825.1 522 78.9
SMO134G0015 Selaginella moellendorffii HOM05D004547 ORTHO05D005133 1.6e-219 766.9 834 51.6
BcaC03g14608 Brassica carinata HOM05D004547 ORTHO05D005133 2.1e-219 766.5 542 72.9
CARHR150020 Cardamine hirsuta HOM05D004547 ORTHO05D005133 4.3e-217 758.8 602 65.3
Nitab4.5_0000895g0220 Nicotiana tabacum HOM05D004547 ORTHO05D005133 3.1e-215 752.7 545 72.1
AagrBONN_evm.TU.Sc2ySwM_117.1032 Anthoceros agrestis HOM05D004547 ORTHO05D005133 3.8e-213 745.7 748 55.6
HPP92_005319 Vanilla planifolia HOM05D004547 ORTHO05D005133 1.9e-209 733.4 614 64.0
FAN06G1216 Fragaria x ananassa HOM05D004547 ORTHO05D005133 3.3e-201 706.1 503 73.0
CBR_g31542 Chara braunii HOM05D004547 ORTHO05D005133 1.1e-188 664.5 898 44.4
CDE04G0004 Ceratophyllum demersum HOM05D004547 ORTHO05D005133 3.0e-178 629.8 559 61.2
MD07G1253600 Malus domestica HOM05D004547 ORTHO05D005133 6.3e-176 622.1 442 74.2
COL.COLO4_14121 Corchorus olitorius HOM05D004547 ORTHO05D005133 8.7e-170 601.7 428 76.2
FAN10G1756 Fragaria x ananassa HOM05D004547 ORTHO05D005133 2.8e-160 570.1 440 68.6
Solyc05g006950.4 Solanum lycopersicum HOM05D004547 ORTHO05D005133 1.2e-145 521.5 397 68.8
COL.COLO4_14122 Corchorus olitorius HOM05D004547 ORTHO05D005133 9.1e-143 511.9 343 75.5
HPP92_005328 Vanilla planifolia HOM05D004547 ORTHO05D005133 1.3e-136 491.5 395 66.8
CDE04G0650 Ceratophyllum demersum HOM05D004547 ORTHO05D005133 9.8e-113 412.1 365 60.5
SHI14003 Sapria himalayana HOM05D004547 ORTHO05D000023 1.1e-106 392.1 341 61.0
BraA02t06300Z Brassica rapa HOM05D004547 ORTHO05D005133 4.0e-106 390.2 291 71.1
Oeu042559.1 Olea europaea HOM05D004547 ORTHO05D005133 1.2e-105 388.7 426 53.3
Nitab4.5_0019601g0010 Nicotiana tabacum HOM05D004547 ORTHO05D005133 4.7e-99 366.7 256 75.0
A10p09160 Brassica napus HOM05D004547 ORTHO05D005133 8.9e-98 362.5 235 78.7
BolC2t08183H Brassica oleracea HOM05D004547 ORTHO05D005133 8.4e-96 355.9 235 77.4
PRCOL_00005609 Prasinoderma coloniale HOM05D004547 ORTHO05D005133 6.6e-93 346.3 853 31.3
SEGI_24302 Sequoiadendron giganteum HOM05D004547 ORTHO05D005133 6.4e-72 276.6 211 67.3
CDE04G2539 Ceratophyllum demersum HOM05D004547 ORTHO05D005133 1.7e-64 251.9 274 53.6
Cre02.g086700 Chlamydomonas reinhardtii HOM05D004547 ORTHO05D005133 2.9e-64 251.1 857 25.7
SEGI_05738 Sequoiadendron giganteum HOM05D004547 ORTHO05D005133 8.7e-61 239.6 230 63.0
SEGI_08321 Sequoiadendron giganteum HOM05D004547 ORTHO05D005133 3.3e-60 237.7 200 61.5
Os06g0669600 Oryza sativa ssp. japonica HOM05D004547 ORTHO05D005133 1.4e-55 222.2 179 65.4
Actinidia24695 Actinidia chinensis HOM05D004547 ORTHO05D005133 1.3e-51 209.1 183 58.5
QL10p003704 Quercus lobata HOM05D004547 ORTHO05D005133 3.7e-51 207.6 209 62.7
HPP92_005318 Vanilla planifolia HOM05D004547 ORTHO05D005133 1.7e-48 198.7 289 42.9
A10p09220 Brassica napus HOM05D004547 ORTHO05D005133 4.4e-44 184.1 122 76.2
MD07G1253700 Malus domestica HOM05D004547 ORTHO05D005133 1.1e-42 179.5 105 90.5
TPR.G196 Trifolium pratense HOM05D004547 ORTHO05D005133 9.1e-42 176.4 129 71.3
BraA10t43007Z Brassica rapa HOM05D004547 ORTHO05D005133 6.7e-37 160.2 104 76.9
BraA10t42999Z Brassica rapa HOM05D004547 ORTHO05D005133 2.6e-36 158.3 104 76.0
BraA10t43002Z Brassica rapa HOM05D004547 ORTHO05D005133 1.2e-33 149.4 96 76.0
A10p09300 Brassica napus HOM05D004547 ORTHO05D005133 1.6e-33 149.1 96 78.1
TAR082G0001 Trochodendron aralioides HOM05D004547 ORTHO05D005133 1.6e-30 139.0 97 71.1
Sc14g0005510 Simmondsia chinensis HOM05D004547 ORTHO05D005133 2.3e-29 135.2 95 72.6
CAN.G74.49 Capsicum annuum HOM05D004547 ORTHO05D005133 9.7e-28 129.8 232 40.9
Psat7g163200 Pisum sativum HOM05D004547 ORTHO05D005133 2.8e-27 128.3 130 50.0
SEGI_13446 Sequoiadendron giganteum HOM05D004547 ORTHO05D005133 2.7e-25 121.7 95 65.3
Actinidia01052 Actinidia chinensis HOM05D004547 ORTHO05D005133 2.9e-24 118.2 95 65.3
GSVIVG01036042001 Vitis vinifera HOM05D004547 ORTHO05D005133 5.0e-24 117.5 144 48.6
FvH4_7g19100 Fragaria vesca HOM05D004547 ORTHO05D005133 1.1e-23 116.3 92 71.7
CAN.G903.1 Capsicum annuum HOM05D004547 ORTHO05D005133 1.4e-21 109.4 247 36.8
Nitab4.5_0004558g0010 Nicotiana tabacum HOM05D004547 ORTHO05D016189 1.4e-21 109.4 216 34.3
CAN.G689.6 Capsicum annuum HOM05D004547 ORTHO05D005133 1.7e-19 102.4 82 64.6
CAN.G280.11 Capsicum annuum HOM05D004547 ORTHO05D005133 6.3e-19 100.5 211 37.0
SEGI_29591 Sequoiadendron giganteum HOM05D004547 ORTHO05D005133 1.1e-18 99.8 99 46.5
FAN06G3837 Fragaria x ananassa HOM05D004547 ORTHO05D005133 8.6e-16 90.1 72 68.1
Haze_23095 Corylus avellana HOM05D001506 ORTHO05D000455 3.6e-14 84.7 163 40.5
Duzib147G0620 Durio zibethinus HOM05D004547 ORTHO05D005133 1.8e-13 82.4 93 54.8
Nitab4.5_0011021g0010 Nicotiana tabacum HOM05D001522 ORTHO05D016189 1.8e-10 72.4 158 32.3
CAN.G118.7 Capsicum annuum HOM05D004547 ORTHO05D005133 4.1e-10 71.2 58 60.3
Pp3c11_26770 Physcomitrium patens HOM05D004547 ORTHO05D005133 1.7e-08 65.9 71 47.9
CAN.G689.5 Capsicum annuum HOM05D004547 ORTHO05D005133 4.7e-06 57.8 61 59.0
Nitab4.5_0008254g0010 Nicotiana tabacum HOM05D017975 ORTHO05D016189 4.7e-06 57.8 166 29.5


User provided reference genes

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