Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA232G2064 Erigeron canadensis HOM05D000539 ORTHO05D000592 4.0e-122 441.8 284 100.0
ECA240G4466 Erigeron canadensis HOM05D000539 ORTHO05D000233 1.4e-50 204.1 566 40.5
ECA236G3736 Erigeron canadensis HOM05D000539 ORTHO05D000233 4.8e-35 152.5 204 67.6
Lsat_1_v5_gn_4_34001 Lactuca sativa HOM05D000539 ORTHO05D000592 5.7e-20 102.4 63 71.4
Lsat_1_v5_gn_2_7701 Lactuca sativa HOM05D000539 ORTHO05D000592 1.3e-19 101.3 63 69.8
Lsat_1_v5_gn_4_88020 Lactuca sativa HOM05D000539 ORTHO05D000592 2.8e-19 100.1 64 68.8
HanXRQChr10g0317551 Helianthus annuus HOM05D000616 ORTHO05D000233 4.8e-19 99.4 88 52.3
ECA246G5051 Erigeron canadensis HOM05D000107 ORTHO05D000062 1.1e-18 98.2 135 48.9
ECA246G2093 Erigeron canadensis HOM05D000107 ORTHO05D000062 1.4e-18 97.8 91 61.5
Lsat_1_v5_gn_5_85761 Lactuca sativa HOM05D011081 ORTHO05D000592 1.4e-18 97.8 63 68.3
ECA236G4222 Erigeron canadensis HOM05D000616 ORTHO05D000233 1.5e-17 94.4 90 56.7
ECA232G3917 Erigeron canadensis HOM05D000107 ORTHO05D000062 3.4e-17 93.2 137 47.4
ECA247G3504 Erigeron canadensis HOM05D011081 ORTHO05D000592 7.7e-17 92.0 64 62.5
Lsat_1_v5_gn_9_120341 Lactuca sativa HOM05D000539 ORTHO05D000233 1.3e-16 91.3 82 53.7
HanXRQChr10g0286251 Helianthus annuus HOM05D011081 ORTHO05D000592 1.9e-15 87.4 64 54.7
HanXRQChr16g0519931 Helianthus annuus HOM05D011081 ORTHO05D000592 1.9e-15 87.4 64 57.8
HanXRQChr09g0262931 Helianthus annuus HOM05D000539 ORTHO05D000592 4.2e-15 86.3 64 57.8
HanXRQChr14g0441961 Helianthus annuus HOM05D000539 ORTHO05D000592 4.2e-15 86.3 64 57.8
HanXRQChr10g0317561 Helianthus annuus HOM05D000539 ORTHO05D000592 1.2e-14 84.7 64 56.2
Lsat_1_v5_gn_4_32420 Lactuca sativa HOM05D000539 ORTHO05D000592 1.6e-14 84.3 63 58.7
Lsat_1_v5_gn_4_12061 Lactuca sativa HOM05D000539 ORTHO05D000592 6.1e-14 82.4 52 69.2
HanXRQChr03g0072891 Helianthus annuus HOM05D011081 ORTHO05D000592 1.5e-12 77.8 62 50.0
ECA240G0180 Erigeron canadensis HOM05D000539 ORTHO05D000233 1.7e-11 74.3 52 63.5
Lsat_1_v5_gn_7_70420 Lactuca sativa HOM05D000539 ORTHO05D000592 2.2e-11 73.9 57 63.2
SHI14858 Sapria himalayana HOM05D000616 ORTHO05D000233 2.2e-11 73.9 197 26.9
SHI43952 Sapria himalayana HOM05D000616 ORTHO05D000233 6.3e-11 72.4 243 28.4
RcHm_v2.0_Chr3g0482291 Rosa chinensis HOM05D000539 ORTHO05D000592 1.2e-09 68.2 62 53.2
RcHm_v2.0_Chr7g0240601 Rosa chinensis HOM05D000539 ORTHO05D000592 1.2e-09 68.2 62 53.2
HanXRQChr08g0229411 Helianthus annuus HOM05D011081 ORTHO05D000592 1.6e-09 67.8 65 47.7
RcHm_v2.0_Chr4g0390571 Rosa chinensis HOM05D000539 ORTHO05D000592 1.6e-09 67.8 62 53.2
RcHm_v2.0_Chr1g0318241 Rosa chinensis HOM05D000539 ORTHO05D000592 2.6e-09 67.0 62 51.6
Sed0011271 Sechium edule HOM05D000539 ORTHO05D000592 1.0e-08 65.1 63 44.4
Sed0004440 Sechium edule HOM05D000539 ORTHO05D000592 1.7e-08 64.3 63 44.4
Sed0014995 Sechium edule HOM05D000539 ORTHO05D000592 1.7e-08 64.3 63 44.4
Sed0019579 Sechium edule HOM05D000539 ORTHO05D000592 1.7e-08 64.3 63 44.4
Sed0016665 Sechium edule HOM05D000539 ORTHO05D000592 2.9e-08 63.5 65 43.1
Sed0019626 Sechium edule HOM05D000539 ORTHO05D000592 2.9e-08 63.5 65 43.1
HanXRQChr17g0567791 Helianthus annuus HOM05D000750 ORTHO05D000592 3.8e-08 63.2 36 66.7
HanXRQChr15g0465241 Helianthus annuus HOM05D000750 ORTHO05D000592 5.0e-08 62.8 36 66.7
RcHm_v2.0_Chr3g0482281 Rosa chinensis HOM05D002644 ORTHO05D000233 5.0e-08 62.8 83 41.0
Sed0000174 Sechium edule HOM05D000539 ORTHO05D000592 6.5e-08 62.4 63 42.9
EL10Ac4g07898 Beta vulgaris HOM05D009341 ORTHO05D011542 8.5e-08 62.0 69 46.4
Atru.chr1.522 Acer truncatum HOM05D000539 ORTHO05D000592 1.1e-07 61.6 56 53.6
Ca_07064_v3 Cicer arietinum L. HOM05D002644 ORTHO05D003267 1.1e-07 61.6 60 45.0
Ciclev10003585m.g Citrus clementina HOM05D000616 ORTHO05D000233 1.1e-07 61.6 62 43.5
Ciclev10017763m.g Citrus clementina HOM05D000616 ORTHO05D000233 1.1e-07 61.6 62 43.5
Ciclev10033571m.g Citrus clementina HOM05D000616 ORTHO05D000233 1.1e-07 61.6 62 43.5
Ca_12950_v3 Cicer arietinum L. HOM05D002644 ORTHO05D003267 1.9e-07 60.8 60 41.7
HanXRQChr04g0104851 Helianthus annuus HOM05D011081 ORTHO05D000592 1.9e-07 60.8 35 65.7
HanXRQChr13g0398291 Helianthus annuus HOM05D011081 ORTHO05D000592 1.9e-07 60.8 35 65.7
MELO3C029090.2 Cucumis melo HOM05D008781 ORTHO05D000592 2.5e-07 60.5 63 46.0
Ca_03334_v3 Cicer arietinum L. HOM05D002644 ORTHO05D000592 3.2e-07 60.1 58 41.4
Ca_20463_v3 Cicer arietinum L. HOM05D002644 ORTHO05D003267 3.2e-07 60.1 58 43.1
Ca_23926_v3 Cicer arietinum L. HOM05D002644 ORTHO05D003267 3.2e-07 60.1 60 41.7
MD01G1047900 Malus domestica HOM05D000539 ORTHO05D000592 3.2e-07 60.1 63 44.4
Ca_06949_v3 Cicer arietinum L. HOM05D002644 ORTHO05D003267 4.2e-07 59.7 84 39.3
MELO3C028463.2 Cucumis melo HOM05D000539 ORTHO05D000592 4.2e-07 59.7 65 44.6
MELO3C035597.2 Cucumis melo HOM05D007110 ORTHO05D000592 4.2e-07 59.7 89 37.1
RcHm_v2.0_Chr1g0318231 Rosa chinensis HOM05D000539 ORTHO05D000233 4.2e-07 59.7 134 32.8
RcHm_v2.0_Chr1g0364031 Rosa chinensis HOM05D000539 ORTHO05D000233 4.2e-07 59.7 80 35.0
MELO3C030218.2 Cucumis melo HOM05D000539 ORTHO05D000592 5.5e-07 59.3 66 45.5
CsaV3_6G018870 Cucumis sativus L. HOM05D000539 ORTHO05D000592 5.5e-07 59.3 62 45.2
HanXRQChr09g0261101 Helianthus annuus HOM05D000539 ORTHO05D000592 5.5e-07 59.3 34 70.6
SHI38698 Sapria himalayana HOM05D000616 ORTHO05D000233 5.5e-07 59.3 62 45.2
Ca_04791_v3 Cicer arietinum L. HOM05D002644 ORTHO05D003267 7.2e-07 58.9 60 41.7
Ca_18593_v3 Cicer arietinum L. HOM05D002644 ORTHO05D003267 7.2e-07 58.9 60 41.7
Ca_19281_v3 Cicer arietinum L. HOM05D002644 ORTHO05D003267 7.2e-07 58.9 60 41.7
Ca_23902_v3 Cicer arietinum L. HOM05D002644 ORTHO05D003267 7.2e-07 58.9 60 41.7
Lsat_1_v5_gn_2_58940 Lactuca sativa HOM05D000539 ORTHO05D000592 7.2e-07 58.9 34 67.6
Nn3g20149 Nelumbo nucifera HOM05D001309 ORTHO05D000385 7.2e-07 58.9 102 38.2
RcHm_v2.0_Chr1g0355551 Rosa chinensis HOM05D000539 ORTHO05D000592 7.2e-07 58.9 62 43.5
RcHm_v2.0_Chr7g0235651 Rosa chinensis HOM05D000539 ORTHO05D000233 7.2e-07 58.9 66 36.4
Sed0025775 Sechium edule HOM05D007110 ORTHO05D000592 7.2e-07 58.9 60 40.0
Sed0026544 Sechium edule HOM05D000539 ORTHO05D000592 7.2e-07 58.9 62 45.2
SHI22978 Sapria himalayana HOM05D000616 ORTHO05D000233 9.4e-07 58.5 61 44.3
Atru.chr7.1246 Acer truncatum HOM05D000539 ORTHO05D000592 1.2e-06 58.2 58 51.7
Ca_06768_v3 Cicer arietinum L. HOM05D002644 ORTHO05D003267 1.2e-06 58.2 69 37.7
MELO3C034193.2 Cucumis melo HOM05D000539 ORTHO05D000592 1.2e-06 58.2 73 39.7
CsaV3_1G045370 Cucumis sativus L. HOM05D000539 ORTHO05D000592 1.2e-06 58.2 62 45.2
HanXRQChr03g0064971 Helianthus annuus HOM05D001309 ORTHO05D005970 1.2e-06 58.2 84 41.7
SHI06731 Sapria himalayana HOM05D007110 ORTHO05D000233 1.2e-06 58.2 55 49.1
Ca_03880_v3 Cicer arietinum L. HOM05D002644 ORTHO05D003267 1.6e-06 57.8 58 39.7
SHI35917 Sapria himalayana HOM05D000616 ORTHO05D000233 1.6e-06 57.8 62 43.5
MELO3C033862.2 Cucumis melo HOM05D000539 ORTHO05D000592 2.1e-06 57.4 62 46.8
MELO3C034305.2 Cucumis melo HOM05D000539 ORTHO05D000592 2.1e-06 57.4 78 35.9
Lj2g0011920 Lotus japonicus HOM05D002644 ORTHO05D003267 2.1e-06 57.4 59 44.1
SHI14002 Sapria himalayana HOM05D000616 ORTHO05D000233 2.1e-06 57.4 57 45.6
SHI28597 Sapria himalayana HOM05D000616 ORTHO05D000233 2.1e-06 57.4 70 35.7
SHI29962 Sapria himalayana HOM05D000616 ORTHO05D000233 2.1e-06 57.4 67 41.8
SHI36792 Sapria himalayana HOM05D000616 ORTHO05D000062 2.1e-06 57.4 84 36.9
Ca_03261_v3 Cicer arietinum L. HOM05D002644 ORTHO05D003267 2.7e-06 57.0 58 41.4
Ca_13592_v3 Cicer arietinum L. HOM05D002644 ORTHO05D003267 2.7e-06 57.0 58 41.4
MELO3C000336.2 Cucumis melo HOM05D000539 ORTHO05D000592 2.7e-06 57.0 61 47.5
FvH4_1g20221 Fragaria vesca HOM05D000539 ORTHO05D000233 2.7e-06 57.0 60 43.3
RcHm_v2.0_Chr2g0112301 Rosa chinensis HOM05D000539 ORTHO05D000233 2.7e-06 57.0 60 43.3
RcHm_v2.0_Chr3g0462471 Rosa chinensis HOM05D000539 ORTHO05D000233 2.7e-06 57.0 77 35.1
RcHm_v2.0_Chr6g0261571 Rosa chinensis HOM05D000539 ORTHO05D000592 2.7e-06 57.0 62 41.9
SalBow3G2933 Salvia bowleyana HOM05D000539 ORTHO05D000592 2.7e-06 57.0 63 44.4
SHI03621 Sapria himalayana HOM05D000616 ORTHO05D000233 2.7e-06 57.0 74 37.8
SHI12282 Sapria himalayana HOM05D000616 ORTHO05D000233 2.7e-06 57.0 86 34.9
Sed0014210 Sechium edule HOM05D007110 ORTHO05D000592 2.7e-06 57.0 60 38.3
Ciclev10013461m.g Citrus clementina HOM05D000616 ORTHO05D000233 3.6e-06 56.6 87 35.6
MELO3C035686.2 Cucumis melo HOM05D007110 ORTHO05D000592 3.6e-06 56.6 62 45.2
HanXRQChr01g0029741 Helianthus annuus HOM05D011081 ORTHO05D000592 3.6e-06 56.6 49 44.9
HanXRQChr08g0213901 Helianthus annuus HOM05D011081 ORTHO05D000592 3.6e-06 56.6 49 44.9
HanXRQChr09g0267321 Helianthus annuus HOM05D011081 ORTHO05D011662 3.6e-06 56.6 35 60.0
Prupe.3G119600 Prunus persica HOM05D000539 ORTHO05D000592 3.6e-06 56.6 61 44.3
SHI15197 Sapria himalayana HOM05D000616 ORTHO05D000233 3.6e-06 56.6 70 41.4
Sed0024905 Sechium edule HOM05D000539 ORTHO05D000592 3.6e-06 56.6 62 43.5
Ca_02759_v3 Cicer arietinum L. HOM05D002644 ORTHO05D003267 4.7e-06 56.2 58 39.7
Ca_19885_v3 Cicer arietinum L. HOM05D002644 ORTHO05D003267 4.7e-06 56.2 57 40.4
Ca_20183_v3 Cicer arietinum L. HOM05D002644 ORTHO05D003267 4.7e-06 56.2 100 33.0
Lsat_1_v5_gn_9_120520 Lactuca sativa HOM05D001309 ORTHO05D005970 4.7e-06 56.2 73 46.6
SHI22555 Sapria himalayana HOM05D000616 ORTHO05D000233 4.7e-06 56.2 63 41.3
SHI39977 Sapria himalayana HOM05D000616 ORTHO05D000233 4.7e-06 56.2 73 38.4
SHI42493 Sapria himalayana HOM05D000616 ORTHO05D000233 4.7e-06 56.2 54 48.1
Atru.chr6.155 Acer truncatum HOM05D000539 ORTHO05D000592 6.1e-06 55.8 60 46.7
Ca_12022_v3 Cicer arietinum L. HOM05D002644 ORTHO05D003267 6.1e-06 55.8 58 39.7
Ciclev10012877m.g Citrus clementina HOM05D000539 ORTHO05D000592 6.1e-06 55.8 58 41.4
Rhsim05G0213000 Rhododendron simsii HOM05D000539 ORTHO05D000233 6.1e-06 55.8 63 41.3
RcHm_v2.0_Chr1g0325021 Rosa chinensis HOM05D000539 ORTHO05D000233 6.1e-06 55.8 156 31.4
RcHm_v2.0_Chr4g0407981 Rosa chinensis HOM05D000539 ORTHO05D000592 6.1e-06 55.8 61 45.9
RcHm_v2.0_Chr6g0271071 Rosa chinensis HOM05D000539 ORTHO05D000592 6.1e-06 55.8 58 41.4
SHI23010 Sapria himalayana HOM05D000616 ORTHO05D000233 6.1e-06 55.8 73 38.4
SHI34585 Sapria himalayana HOM05D000616 ORTHO05D000233 6.1e-06 55.8 62 41.9
Sed0025384 Sechium edule HOM05D007110 ORTHO05D000592 6.1e-06 55.8 61 37.7
ClCG09G008820 Citrullus lanatus HOM05D000539 ORTHO05D000233 8.0e-06 55.5 97 34.0
MELO3C027923.2 Cucumis melo HOM05D000539 ORTHO05D000592 8.0e-06 55.5 59 49.2
Prupe.4G254700 Prunus persica HOM05D000539 ORTHO05D000233 8.0e-06 55.5 306 23.9
RcHm_v2.0_Chr1g0340601 Rosa chinensis HOM05D000539 ORTHO05D000233 8.0e-06 55.5 96 29.2
RcHm_v2.0_Chr4g0393861 Rosa chinensis HOM05D000539 ORTHO05D000233 8.0e-06 55.5 83 31.3
RcHm_v2.0_Chr4g0407991 Rosa chinensis HOM05D000539 ORTHO05D000233 8.0e-06 55.5 83 31.3
RcHm_v2.0_Chr5g0082411 Rosa chinensis HOM05D000539 ORTHO05D000233 8.0e-06 55.5 77 35.1
SalBow6G4879 Salvia bowleyana HOM05D000539 ORTHO05D000592 8.0e-06 55.5 72 37.5
SHI06622 Sapria himalayana HOM05D000616 ORTHO05D000233 8.0e-06 55.5 73 37.0
SHI07772 Sapria himalayana HOM05D000616 ORTHO05D000233 8.0e-06 55.5 66 43.9
SHI19528 Sapria himalayana HOM05D000616 ORTHO05D000233 8.0e-06 55.5 61 41.0
SHI27548 Sapria himalayana HOM05D000616 ORTHO05D000233 8.0e-06 55.5 63 46.0
Sed0007296 Sechium edule HOM05D000539 ORTHO05D000592 8.0e-06 55.5 61 36.1


User provided reference genes

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