Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA232G1846 Erigeron canadensis HOM05D004407 ORTHO05D005074 1.3e-87 326.6 192 100.0
HanXRQChr09g0255761 Helianthus annuus HOM05D004407 ORTHO05D005074 5.7e-40 168.3 192 62.0
Lsat_1_v5_gn_4_184741 Lactuca sativa HOM05D004407 ORTHO05D005074 1.6e-29 133.7 193 51.3
ECA238G3732 Erigeron canadensis HOM05D004407 ORTHO05D005074 1.7e-20 103.6 189 37.0
Lsat_1_v5_gn_2_93521 Lactuca sativa HOM05D004407 ORTHO05D005074 3.8e-20 102.4 88 61.4
TAR622G1038 Trochodendron aralioides HOM05D004407 ORTHO05D005074 4.2e-19 99.0 197 37.6
Solyc02g093710.1 Solanum lycopersicum HOM05D004407 ORTHO05D005074 3.6e-18 95.9 196 36.7
Sopen02g038350 Solanum pennellii HOM05D004407 ORTHO05D005074 6.1e-18 95.1 196 36.2
QL02p073303 Quercus lobata HOM05D004407 ORTHO05D005074 1.4e-17 94.0 196 37.8
QL02p073308 Quercus lobata HOM05D004407 ORTHO05D005074 1.4e-17 94.0 196 37.8
ECA238G3518 Erigeron canadensis HOM05D004407 ORTHO05D005074 5.2e-17 92.0 88 55.7
Nitab4.5_0001863g0220 Nicotiana tabacum HOM05D004407 ORTHO05D005074 8.9e-17 91.3 198 35.4
Prupe.3G298500 Prunus persica HOM05D004407 ORTHO05D005074 1.5e-16 90.5 79 58.2
CSS0009144 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000067 2.6e-16 89.7 202 40.6
Aa31LG9G940 Aethionema arabicum HOM05D004407 ORTHO05D005074 3.4e-16 89.4 183 39.3
Cc07_g00320 Coffea canephora HOM05D004407 ORTHO05D005074 4.4e-16 89.0 201 35.3
Manes.15G155400 Manihot esculenta HOM05D004407 ORTHO05D005074 4.4e-16 89.0 200 33.0
PGSC0003DMG400012626 Solanum tuberosum HOM05D004407 ORTHO05D005074 4.4e-16 89.0 196 36.2
CARHR213820 Cardamine hirsuta HOM05D004407 ORTHO05D005074 5.7e-16 88.6 200 38.5
Nitab4.5_0001031g0160 Nicotiana tabacum HOM05D004407 ORTHO05D005074 7.5e-16 88.2 198 34.8
Psat0s1368g0080 Pisum sativum HOM05D004407 ORTHO05D005074 7.5e-16 88.2 85 52.9
Oeu054661.1 Olea europaea HOM05D004407 ORTHO05D005074 1.3e-15 87.4 192 33.9
CANSAT64G2558 Cannabis sativa HOM05D004407 ORTHO05D005074 1.7e-15 87.0 210 37.6
Sed0027888 Sechium edule HOM05D004407 ORTHO05D005074 1.7e-15 87.0 102 45.1
Ca_03872_v3 Cicer arietinum L. HOM05D004407 ORTHO05D005074 2.8e-15 86.3 85 52.9
Hma1.2p1_0279F.1_g112130 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 2.8e-15 86.3 76 57.9
Nn3g16588 Nelumbo nucifera HOM05D004407 ORTHO05D005074 6.3e-15 85.1 202 34.2
Haze_14799 Corylus avellana HOM05D002760 ORTHO05D003169 8.3e-15 84.7 197 34.0
Gohir.D04G080420 Gossypium hirsutum HOM05D004407 ORTHO05D005074 8.3e-15 84.7 55 67.3
HanXRQChr14g0451031 Helianthus annuus HOM05D004407 ORTHO05D005074 8.3e-15 84.7 88 56.8
MD09G1018600 Malus domestica HOM05D004407 ORTHO05D005074 8.3e-15 84.7 198 33.8
TAR374G1728 Trochodendron aralioides HOM05D004407 ORTHO05D005074 8.3e-15 84.7 90 51.1
MBI11_g29154_MAGBIO Magnolia biondii HOM05D004407 ORTHO05D005074 1.1e-14 84.3 106 44.3
Gorai.012G091100 Gossypium raimondii HOM05D004407 ORTHO05D005074 1.4e-14 84.0 55 67.3
Actinidia05950 Actinidia chinensis HOM05D004407 ORTHO05D005074 2.4e-14 83.2 190 37.9
BraA04t17032Z Brassica rapa HOM05D004407 ORTHO05D005074 4.1e-14 82.4 203 41.4
Nn4g22470 Nelumbo nucifera HOM05D004407 ORTHO05D005074 4.1e-14 82.4 202 31.7
Potri.001G338100 Populus trichocarpa HOM05D004407 ORTHO05D005074 4.1e-14 82.4 83 53.0
Duzib187G1586 Durio zibethinus HOM05D004407 ORTHO05D005074 5.4e-14 82.0 102 46.1
Phvul.008G156900 Phaseolus vulgaris HOM05D004407 ORTHO05D005074 9.2e-14 81.3 91 47.3
Thecc.04G026300 Theobroma cacao HOM05D004407 ORTHO05D005074 9.2e-14 81.3 101 48.5
A04p13730 Brassica napus HOM05D004407 ORTHO05D005074 1.2e-13 80.9 198 38.4
Prupe.3G298600 Prunus persica HOM05D004407 ORTHO05D005074 1.2e-13 80.9 99 46.5
Sed0005342 Sechium edule HOM05D004407 ORTHO05D005074 1.2e-13 80.9 83 47.0
CiPaw.03G049400 Carya illinoinensis HOM05D004407 ORTHO05D005074 1.6e-13 80.5 202 35.6
Thhalv10028148m.g Eutrema salsugineum HOM05D004407 ORTHO05D005074 1.6e-13 80.5 192 40.6
RcHm_v2.0_Chr2g0173921 Rosa chinensis HOM05D004407 ORTHO05D005074 2.7e-13 79.7 92 47.8
BolC4t26352H Brassica oleracea HOM05D004407 ORTHO05D005074 3.5e-13 79.3 197 39.6
ClCG09G019590 Citrullus lanatus HOM05D004407 ORTHO05D005074 3.5e-13 79.3 83 48.2
Medtr1g051195 Medicago truncatula HOM05D004407 ORTHO05D005074 3.5e-13 79.3 86 51.2
VMungo1383G1696 Vigna mungo HOM05D004407 ORTHO05D005074 3.5e-13 79.3 80 48.8
CAN.G473.50 Capsicum annuum HOM05D004407 ORTHO05D005074 4.5e-13 79.0 198 34.8
CsaV3_5G026800 Cucumis sativus L. HOM05D004407 ORTHO05D005074 4.5e-13 79.0 83 47.0
Glyma.02G190900 Glycine max HOM05D004407 ORTHO05D005074 4.5e-13 79.0 81 51.9
Gohir.A09G032000 Gossypium hirsutum HOM05D004407 ORTHO05D005074 4.5e-13 79.0 54 64.8
Gorai.006G037000 Gossypium raimondii HOM05D004407 ORTHO05D005074 4.5e-13 79.0 54 64.8
Thecc.04G026400 Theobroma cacao HOM05D004407 ORTHO05D005074 4.5e-13 79.0 208 36.5
Hma1.2p1_0818F.1_g223550 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 7.8e-13 78.2 86 51.2
Hma1.2p1_1484F.1_g286420 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 7.8e-13 78.2 86 51.2
Rhsim10G0012300 Rhododendron simsii HOM05D004407 ORTHO05D005074 7.8e-13 78.2 105 46.7
Sp7g01180 Schrenkiella parvula HOM05D004407 ORTHO05D005074 7.8e-13 78.2 90 48.9
PGR083G0262 Punica granatum HOM05D004407 ORTHO05D005074 1.0e-12 77.8 202 33.7
Cpa.g.sc130.51 Carica papaya HOM05D004407 ORTHO05D005074 1.3e-12 77.4 186 33.9
MD17G1019100 Malus domestica HOM05D004407 ORTHO05D005074 1.3e-12 77.4 101 43.6
TPR.G1105 Trifolium pratense HOM05D004407 ORTHO05D005074 1.3e-12 77.4 77 50.6
EL10Ac4g07679 Beta vulgaris HOM05D004407 ORTHO05D005074 1.7e-12 77.0 55 61.8
MELO3C021614.2 Cucumis melo HOM05D004407 ORTHO05D005074 1.7e-12 77.0 54 63.0
Carub.0007s3479 Capsella rubella HOM05D004407 ORTHO05D005074 2.3e-12 76.6 200 39.0
Eucgr.J02274 Eucalyptus grandis HOM05D004407 ORTHO05D005074 2.3e-12 76.6 107 41.1
Hma1.2p1_0818F.1_g223510 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 2.3e-12 76.6 51 70.6
Sabra16G0218800 Salix brachista HOM05D000111 ORTHO05D000134 2.3e-12 76.6 81 48.1
Ciclev10017684m.g Citrus clementina HOM05D004407 ORTHO05D005074 2.9e-12 76.3 198 32.8
FvH4_6g52330 Fragaria vesca HOM05D004407 ORTHO05D005074 2.9e-12 76.3 147 35.4
Hma1.2p1_1484F.1_g286410 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 2.9e-12 76.3 87 55.2
Potri.001G336200 Populus trichocarpa HOM05D004407 ORTHO05D005074 2.9e-12 76.3 198 32.3
Ah.06g182110 Amaranthus hybridus HOM05D004407 ORTHO05D005074 3.8e-12 75.9 55 60.0
CANSAT64G1834 Cannabis sativa HOM05D004407 ORTHO05D005074 3.8e-12 75.9 90 46.7
Migut.H00046 Erythranthe guttata HOM05D004407 ORTHO05D005074 3.8e-12 75.9 94 43.6
TPR.G1219 Trifolium pratense HOM05D004407 ORTHO05D005074 3.8e-12 75.9 77 51.9
Hma1.2p1_0818F.1_g223530 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 5.0e-12 75.5 54 66.7
Hma1.2p1_1484F.1_g286386 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 5.0e-12 75.5 54 66.7
C04p47510 Brassica napus HOM05D004407 ORTHO05D005074 6.6e-12 75.1 96 45.8
FAN05G1079 Fragaria x ananassa HOM05D004407 ORTHO05D005074 6.6e-12 75.1 100 43.0
Rhsim10G0012400 Rhododendron simsii HOM05D004407 ORTHO05D005074 8.6e-12 74.7 197 33.0
SGA_v2.0_scaffold47G17536 Striga asiatica HOM05D004407 ORTHO05D005074 1.1e-11 74.3 180 33.3
DCAR_015072 Daucus carota HOM05D004407 ORTHO05D005074 1.5e-11 73.9 54 59.3
TWI36G1179 Tripterygium wilfordii HOM05D004407 ORTHO05D005074 1.5e-11 73.9 198 31.8
Sed0009704 Sechium edule HOM05D004407 ORTHO05D005074 1.9e-11 73.6 67 52.2
TAR625G1142 Trochodendron aralioides HOM05D004407 ORTHO05D005074 1.9e-11 73.6 92 45.7
unitig_747.g21864 Utricularia gibba HOM05D004407 ORTHO05D005074 1.9e-11 73.6 77 50.6
Aqoxy3G01382 Aquilegia oxysepala HOM05D004407 ORTHO05D005074 2.5e-11 73.2 105 42.9
MSTRG.24058 Avicennia marina HOM05D004407 ORTHO05D005074 2.5e-11 73.2 88 45.5
Hma1.2p1_1484F.1_g286390 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 2.5e-11 73.2 86 48.8
Sabra16G0217100 Salix brachista HOM05D004407 ORTHO05D005074 2.5e-11 73.2 163 33.1
Dinv25704 Davidia involucrata HOM05D004407 ORTHO05D005074 3.3e-11 72.8 176 34.7
Gohir.A05G342300 Gossypium hirsutum HOM05D004407 ORTHO05D005074 3.3e-11 72.8 88 46.6
Duzib264G0535 Durio zibethinus HOM05D004407 ORTHO05D005074 4.3e-11 72.4 90 44.4
THA.LOC104825308 Tarenaya hassleriana HOM05D004407 ORTHO05D005074 4.3e-11 72.4 105 41.9
COL.COLO4_29257 Corchorus olitorius HOM05D004407 ORTHO05D005074 5.6e-11 72.0 51 60.8
FAN14G0353 Fragaria x ananassa HOM05D004407 ORTHO05D005074 5.6e-11 72.0 57 54.4
Gohir.A11G065600 Gossypium hirsutum HOM05D004407 ORTHO05D005074 5.6e-11 72.0 97 46.4
Hma1.2p1_0818F.1_g223560 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 5.6e-11 72.0 54 64.8
THA.LOC104805351 Tarenaya hassleriana HOM05D004407 ORTHO05D005074 7.3e-11 71.6 99 42.4
Peaxi162Scf00420g00249 Petunia axillaris HOM05D004407 ORTHO05D005074 9.5e-11 71.2 164 34.1
Aa31LG2G5400 Aethionema arabicum HOM05D004407 ORTHO05D005074 1.6e-10 70.5 197 29.9
Aqoxy4G01774 Aquilegia oxysepala HOM05D004407 ORTHO05D005074 2.1e-10 70.1 216 35.6
Aqoxy5G03597 Aquilegia oxysepala HOM05D004407 ORTHO05D005074 2.1e-10 70.1 216 35.6
DCAR_015074 Daucus carota HOM05D004407 ORTHO05D005074 3.6e-10 69.3 90 41.1
Thhalv10028030m.g Eutrema salsugineum HOM05D004407 ORTHO05D005074 3.6e-10 69.3 203 31.0
PSO407G0367 Papaver somniferum HOM05D004407 ORTHO05D005074 3.6e-10 69.3 106 41.5
Sc03g0006970 Simmondsia chinensis HOM05D004407 ORTHO05D005074 4.7e-10 68.9 58 56.9
SGA_v2.0_scaffold154G37145 Striga asiatica HOM05D002760 ORTHO05D003169 6.1e-10 68.6 44 68.2
Sc03g0006940 Simmondsia chinensis HOM05D004407 ORTHO05D005074 8.0e-10 68.2 202 33.7
Duzib187G1582 Durio zibethinus HOM05D004407 ORTHO05D005074 1.8e-09 67.0 198 31.8
Migut.K01432 Erythranthe guttata HOM05D004407 ORTHO05D005074 2.3e-09 66.6 186 45.7
PSO063G0264 Papaver somniferum HOM05D004407 ORTHO05D005074 2.3e-09 66.6 55 58.2
PSO832G4071 Papaver somniferum HOM05D004407 ORTHO05D005074 2.3e-09 66.6 55 58.2
PGR083G1149 Punica granatum HOM05D004407 ORTHO05D005074 3.1e-09 66.2 101 41.6
PSO017G7028 Papaver somniferum HOM05D004407 ORTHO05D005074 5.2e-09 65.5 55 56.4
Gohir.D11G069800 Gossypium hirsutum HOM05D004407 ORTHO05D005074 1.5e-08 63.9 102 40.2
Gorai.007G074900 Gossypium raimondii HOM05D004407 ORTHO05D005074 2.0e-08 63.5 79 45.6
GSVIVG01003970001 Vitis vinifera HOM05D004407 ORTHO05D005074 2.6e-08 63.2 53 54.7
BcaB07g31285 Brassica carinata HOM05D004407 ORTHO05D005074 3.4e-08 62.8 55 52.7
PGR083G0848 Punica granatum HOM05D004407 ORTHO05D005074 3.4e-08 62.8 105 40.0
BcaC04g22350 Brassica carinata HOM05D004407 ORTHO05D005074 4.4e-08 62.4 55 49.1
C09p20260 Brassica napus HOM05D006758 ORTHO05D008326 4.4e-08 62.4 55 49.1
BolC9t54931H Brassica oleracea HOM05D006758 ORTHO05D008326 4.4e-08 62.4 55 49.1
BcaB02g07933 Brassica carinata HOM05D004407 ORTHO05D005074 5.8e-08 62.0 200 30.5
BcaNung02831 Brassica carinata HOM05D004407 ORTHO05D005074 1.3e-07 60.8 94 39.4
A09p16650 Brassica napus HOM05D006758 ORTHO05D008326 1.3e-07 60.8 55 49.1
BraA09t37304Z Brassica rapa HOM05D006758 ORTHO05D008326 1.3e-07 60.8 55 49.1
HPP92_009915 Vanilla planifolia HOM05D004407 ORTHO05D005074 1.7e-07 60.5 54 48.1
CARHR025870 Cardamine hirsuta HOM05D004407 ORTHO05D005074 2.2e-07 60.1 55 50.9
AL7G49050 Arabidopsis lyrata HOM05D004407 ORTHO05D005074 3.7e-07 59.3 84 42.9
AT5G40690 Arabidopsis thaliana HOM05D004407 ORTHO05D005074 3.7e-07 59.3 184 39.7
C04p02920 Brassica napus HOM05D004407 ORTHO05D005074 4.9e-07 58.9 95 38.9
BolC4t21933H Brassica oleracea HOM05D004407 ORTHO05D005074 4.9e-07 58.9 95 38.9
HPP92_009916 Vanilla planifolia HOM05D004407 ORTHO05D005074 6.4e-07 58.5 54 44.4
BraA05t19239Z Brassica rapa HOM05D004407 ORTHO05D005074 1.1e-06 57.8 95 38.9
A05p02450 Brassica napus HOM05D004407 ORTHO05D005074 2.4e-06 56.6 96 39.6
BcaNung02832 Brassica carinata HOM05D004407 ORTHO05D005074 4.1e-06 55.8 94 38.3
Thhalv10019315m.g Eutrema salsugineum HOM05D004407 ORTHO05D005074 4.1e-06 55.8 86 38.4
A05p02470 Brassica napus HOM05D004407 ORTHO05D005074 7.0e-06 55.1 86 37.2


User provided reference genes

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