Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA232G1832 Erigeron canadensis HOM05D005070 ORTHO05D005987 4.2e-47 191.0 99 100.0
Lsat_1_v5_gn_4_72681 Lactuca sativa HOM05D005070 ORTHO05D005987 9.2e-34 146.7 97 77.3
HanXRQChr09g0271731 Helianthus annuus HOM05D005070 ORTHO05D005987 2.3e-32 142.1 95 77.9
HanXRQChr16g0503551 Helianthus annuus HOM05D005070 ORTHO05D005987 5.0e-32 141.0 95 77.9
Aqoxy3G03084 Aquilegia oxysepala HOM05D005070 ORTHO05D005987 3.6e-22 108.2 97 60.8
Prupe.5G178000 Prunus persica HOM05D005070 ORTHO05D005987 6.2e-22 107.5 94 57.4
Dinv20690 Davidia involucrata HOM05D005070 ORTHO05D005987 8.0e-22 107.1 93 59.1
Nitab4.5_0003132g0040 Nicotiana tabacum HOM05D005070 ORTHO05D005987 8.0e-22 107.1 94 58.5
Nitab4.5_0005570g0060 Nicotiana tabacum HOM05D005070 ORTHO05D005987 1.8e-21 105.9 94 57.4
unitig_0.g791 Utricularia gibba HOM05D005070 ORTHO05D005987 4.0e-21 104.8 98 58.2
Hma1.2p1_1643F.1_g295270 Hydrangea macrophylla HOM05D005070 ORTHO05D005987 5.2e-21 104.4 93 57.0
Hma1.2p1_2351F.1_g320498 Hydrangea macrophylla HOM05D005070 ORTHO05D005987 5.2e-21 104.4 93 57.0
MD14G1185300 Malus domestica HOM05D005070 ORTHO05D005987 5.2e-21 104.4 91 57.1
Hma1.2p1_0002F.1_g002700 Hydrangea macrophylla HOM05D005070 ORTHO05D005987 6.8e-21 104.0 97 54.6
MD06G1180200 Malus domestica HOM05D005070 ORTHO05D005987 6.8e-21 104.0 94 56.4
Psat5g113840 Pisum sativum HOM05D005070 ORTHO05D005987 8.9e-21 103.6 95 58.9
Cc04_g13080 Coffea canephora HOM05D005070 ORTHO05D005987 1.5e-20 102.8 67 73.1
Solyc06g073360.3 Solanum lycopersicum HOM05D005070 ORTHO05D005987 1.5e-20 102.8 94 57.4
Sopen06g029740 Solanum pennellii HOM05D005070 ORTHO05D005987 1.5e-20 102.8 94 57.4
Atru.chr9.2417 Acer truncatum HOM05D005070 ORTHO05D005987 2.6e-20 102.1 97 56.7
Thecc.03G005900 Theobroma cacao HOM05D005070 ORTHO05D005987 2.6e-20 102.1 93 54.8
Ca_16205_v3 Cicer arietinum L. HOM05D000612 ORTHO05D005987 3.4e-20 101.7 95 57.9
CSS0001011 Camellia sinensis var. sinensis HOM05D005070 ORTHO05D005987 4.4e-20 101.3 95 55.8
Cfa019078 Carpinus fangiana HOM05D005070 ORTHO05D005987 4.4e-20 101.3 89 58.4
MELO3C017115.2 Cucumis melo HOM05D005070 ORTHO05D005987 4.4e-20 101.3 97 52.6
Eucgr.B00344 Eucalyptus grandis HOM05D005070 ORTHO05D005987 5.8e-20 100.9 83 57.8
MSTRG.4382 Avicennia marina HOM05D005070 ORTHO05D005987 7.5e-20 100.5 94 55.3
Glyma.06G185100 Glycine max HOM05D005070 ORTHO05D005987 7.5e-20 100.5 79 62.0
Nn3g16981 Nelumbo nucifera HOM05D005070 ORTHO05D005987 7.5e-20 100.5 96 58.3
Dinv09171 Davidia involucrata HOM05D005070 ORTHO05D005987 9.8e-20 100.1 86 61.6
TAR371G1219 Trochodendron aralioides HOM05D005070 ORTHO05D005987 9.8e-20 100.1 89 57.3
Manes.06G101600 Manihot esculenta HOM05D005070 ORTHO05D005987 1.3e-19 99.8 84 63.1
Oeu022174.1 Olea europaea HOM05D005070 ORTHO05D005987 1.3e-19 99.8 98 56.1
COL.COLO4_04329 Corchorus olitorius HOM05D005070 ORTHO05D005987 1.7e-19 99.4 92 53.3
Phvul.009G149950 Phaseolus vulgaris HOM05D005070 ORTHO05D005987 1.7e-19 99.4 94 55.3
Aa31LG4G16490 Aethionema arabicum HOM05D007129 ORTHO05D008680 2.2e-19 99.0 81 61.7
Glyma.04G179700 Glycine max HOM05D005070 ORTHO05D005987 2.2e-19 99.0 94 55.3
Sabra12G0055200 Salix brachista HOM05D005070 ORTHO05D005987 2.2e-19 99.0 94 54.3
TAR629G1223 Trochodendron aralioides HOM05D005070 ORTHO05D005987 2.2e-19 99.0 95 55.8
MSTRG.9667 Avicennia marina HOM05D005070 ORTHO05D005987 2.9e-19 98.6 94 55.3
Medtr3g078310 Medicago truncatula HOM05D005070 ORTHO05D005987 2.9e-19 98.6 94 54.3
PGR083G2074 Punica granatum HOM05D005070 ORTHO05D005987 2.9e-19 98.6 89 59.6
RcHm_v2.0_Chr7g0179591 Rosa chinensis HOM05D005070 ORTHO05D005987 2.9e-19 98.6 98 56.1
Potri.012G077101 Populus trichocarpa HOM05D005070 ORTHO05D005987 3.7e-19 98.2 79 60.8
CiPaw.12G023900 Carya illinoinensis HOM05D005070 ORTHO05D005987 4.9e-19 97.8 89 56.2
Manes.06G101800 Manihot esculenta HOM05D005070 ORTHO05D005987 4.9e-19 97.8 84 61.9
Potri.015G072100 Populus trichocarpa HOM05D005070 ORTHO05D005987 4.9e-19 97.8 101 54.5
QL10p013399 Quercus lobata HOM05D005070 ORTHO05D005987 4.9e-19 97.8 89 56.2
CsaV3_1G001750 Cucumis sativus L. HOM05D005070 ORTHO05D005987 8.3e-19 97.1 94 54.3
Nn4g22889 Nelumbo nucifera HOM05D005070 ORTHO05D005987 8.3e-19 97.1 94 54.3
GSVIVG01007813001 Vitis vinifera HOM05D005070 ORTHO05D005987 8.3e-19 97.1 89 55.1
Actinidia19084 Actinidia chinensis HOM05D005070 ORTHO05D005987 1.1e-18 96.7 97 51.5
Lalb_Chr23g0273091 Lupinus albus HOM05D005070 ORTHO05D005987 1.1e-18 96.7 94 54.3
arahy.Tifrunner.gnm1.ann1.FI7QKA Arachis hypogaea HOM05D005070 ORTHO05D005987 1.4e-18 96.3 94 53.2
Peaxi162Scf00375g00418 Petunia axillaris HOM05D005070 ORTHO05D005987 1.4e-18 96.3 94 52.1
Lj1g0020478 Lotus japonicus HOM05D005070 ORTHO05D005987 1.9e-18 95.9 94 51.1
Sc04g0002050 Simmondsia chinensis HOM05D005070 ORTHO05D005987 1.9e-18 95.9 94 54.3
TPR.G17706 Trifolium pratense HOM05D005070 ORTHO05D005987 1.9e-18 95.9 95 54.7
Gorai.008G297700 Gossypium raimondii HOM05D005070 ORTHO05D005987 2.4e-18 95.5 93 52.7
CANSAT80G1974 Cannabis sativa HOM05D005070 ORTHO05D005987 3.2e-18 95.1 67 65.7
arahy.Tifrunner.gnm1.ann1.LKK6LB Arachis hypogaea HOM05D005070 ORTHO05D005987 4.1e-18 94.7 96 55.2
CANSAT35G0192 Cannabis sativa HOM05D005070 ORTHO05D005987 4.1e-18 94.7 67 65.7
Sed0009180 Sechium edule HOM05D005070 ORTHO05D005987 4.1e-18 94.7 71 60.6
DCAR_031298 Daucus carota HOM05D005070 ORTHO05D005987 5.4e-18 94.4 92 57.6
Duzib068G0746 Durio zibethinus HOM05D005070 ORTHO05D005987 5.4e-18 94.4 93 51.6
Migut.D01788 Erythranthe guttata HOM05D005070 ORTHO05D005987 5.4e-18 94.4 67 67.2
Gohir.A12G276360 Gossypium hirsutum HOM05D005070 ORTHO05D005987 5.4e-18 94.4 86 54.7
Gohir.D12G277200 Gossypium hirsutum HOM05D005070 ORTHO05D005987 5.4e-18 94.4 64 67.2
TWI32G1183 Tripterygium wilfordii HOM05D005070 ORTHO05D005987 5.4e-18 94.4 95 52.6
TWI34G0241 Tripterygium wilfordii HOM05D005070 ORTHO05D005987 5.4e-18 94.4 96 53.1
Thhalv10005150m.g Eutrema salsugineum HOM05D005070 ORTHO05D005987 7.0e-18 94.0 85 52.9
Sed0013294 Sechium edule HOM05D005070 ORTHO05D005987 7.0e-18 94.0 97 52.6
Hund09411 Selenicereus undatus HOM05D005070 ORTHO05D005987 7.0e-18 94.0 95 54.7
TAR622G0050 Trochodendron aralioides HOM05D005070 ORTHO05D005987 7.0e-18 94.0 68 63.2
Actinidia33046 Actinidia chinensis HOM05D005070 ORTHO05D005987 9.2e-18 93.6 97 51.5
AT5G62575 Arabidopsis thaliana HOM05D005070 ORTHO05D005987 9.2e-18 93.6 81 55.6
Carub.0005s1395 Capsella rubella HOM05D005070 ORTHO05D005987 9.2e-18 93.6 95 50.5
Oeu016348.1 Olea europaea HOM05D005070 ORTHO05D005987 9.2e-18 93.6 66 66.7
SGA_v2.0_scaffold7G04113 Striga asiatica HOM05D007129 ORTHO05D008680 9.2e-18 93.6 94 53.2
Duzib205G1171 Durio zibethinus HOM05D005070 ORTHO05D005987 2.0e-17 92.4 81 59.3
Thhalv10010853m.g Eutrema salsugineum HOM05D005070 ORTHO05D005987 2.0e-17 92.4 95 52.6
Phvul.009G181300 Phaseolus vulgaris HOM05D005070 ORTHO05D005987 2.0e-17 92.4 93 50.5
Sp2g25760 Schrenkiella parvula HOM05D005070 ORTHO05D005987 2.0e-17 92.4 85 52.9
Ciclev10024649m.g Citrus clementina HOM05D005070 ORTHO05D005987 2.7e-17 92.0 95 55.8
CARHR156530 Cardamine hirsuta HOM05D005070 ORTHO05D005987 3.5e-17 91.7 93 50.5
THA.LOC104821444 Tarenaya hassleriana HOM05D005070 ORTHO05D005987 3.5e-17 91.7 94 50.0
Carub.0008s2325 Capsella rubella HOM05D005070 ORTHO05D005987 4.6e-17 91.3 81 55.6
Lalb_Chr11g0071141 Lupinus albus HOM05D005070 ORTHO05D005987 4.6e-17 91.3 94 50.0
TPR.G15088 Trifolium pratense HOM05D005070 ORTHO05D005987 4.6e-17 91.3 94 51.1
FvH4_5g16500 Fragaria vesca HOM05D005070 ORTHO05D005987 7.8e-17 90.5 98 54.1
FAN04G3047 Fragaria x ananassa HOM05D005070 ORTHO05D005987 7.8e-17 90.5 98 54.1
FAN13G2199 Fragaria x ananassa HOM05D005070 ORTHO05D005987 7.8e-17 90.5 98 54.1
FAN18G1077 Fragaria x ananassa HOM05D005070 ORTHO05D005987 7.8e-17 90.5 98 54.1
BcaB01g00872 Brassica carinata HOM05D005070 ORTHO05D005987 1.3e-16 89.7 93 52.7
DCAR_026116 Daucus carota HOM05D000306 ORTHO05D005987 1.3e-16 89.7 65 66.2
AL5G27130 Arabidopsis lyrata HOM05D005070 ORTHO05D005987 1.7e-16 89.4 84 53.6
CSS0038581 Camellia sinensis var. sinensis HOM05D005070 ORTHO05D005987 1.7e-16 89.4 67 59.7
CARHR276360 Cardamine hirsuta HOM05D005070 ORTHO05D005987 2.3e-16 89.0 77 54.5
A06p19790 Brassica napus HOM05D005070 ORTHO05D005987 5.0e-16 87.8 93 52.7
BraA06t25059Z Brassica rapa HOM05D005070 ORTHO05D005987 5.0e-16 87.8 93 52.7
AT3G47833 Arabidopsis thaliana HOM05D005070 ORTHO05D005987 6.6e-16 87.4 80 55.0
MBI02_g26995_MAGBIO Magnolia biondii HOM05D005070 ORTHO05D005987 6.6e-16 87.4 87 50.6
BolC3t19504H Brassica oleracea HOM05D005070 ORTHO05D005987 1.9e-15 85.9 93 51.6
THA.LOC104819433 Tarenaya hassleriana HOM05D005070 ORTHO05D005987 1.9e-15 85.9 89 49.4
BcaC01g01772 Brassica carinata HOM05D005070 ORTHO05D005987 3.3e-15 85.1 93 50.5
C03p72060 Brassica napus HOM05D005070 ORTHO05D005987 3.3e-15 85.1 93 50.5
ATR1149G117 Amborella trichopoda HOM05D005070 ORTHO05D005987 4.3e-15 84.7 66 56.1
CDE10G1084 Ceratophyllum demersum HOM05D005070 ORTHO05D005987 7.3e-15 84.0 77 53.2
FAN08G0574 Fragaria x ananassa HOM05D005070 ORTHO05D005987 1.2e-14 83.2 98 51.0
EL10Ac5g10819 Beta vulgaris HOM05D005070 ORTHO05D005987 3.6e-14 81.6 94 50.0
BcaB02g10688 Brassica carinata HOM05D005070 ORTHO05D005987 6.2e-14 80.9 91 45.1
BcaC01g02293 Brassica carinata HOM05D005070 ORTHO05D005987 8.1e-14 80.5 91 45.1
C03p66960 Brassica napus HOM05D005070 ORTHO05D005987 8.1e-14 80.5 91 45.1
BolC3t18969H Brassica oleracea HOM05D005070 ORTHO05D005987 8.1e-14 80.5 91 45.1
Rhsim12G0162300 Rhododendron simsii HOM05D005070 ORTHO05D005987 3.1e-13 78.6 60 61.7
PSO017G3759 Papaver somniferum HOM05D005070 ORTHO05D005987 6.8e-13 77.4 85 50.6
AUR62008276 Chenopodium quinoa HOM05D005070 ORTHO05D005987 8.9e-13 77.0 101 47.5
PSO832G4075 Papaver somniferum HOM05D005070 ORTHO05D005987 2.0e-12 75.9 81 51.9
CDE10G1207 Ceratophyllum demersum HOM05D005070 ORTHO05D005987 4.4e-12 74.7 57 57.9
PSO478G4659 Papaver somniferum HOM05D005070 ORTHO05D005987 5.8e-12 74.3 85 48.2
PSO063G7000 Papaver somniferum HOM05D005070 ORTHO05D005987 9.9e-12 73.6 81 51.9
Hma1.2p1_1643F.1_g295260 Hydrangea macrophylla HOM05D005070 ORTHO05D005987 2.2e-11 72.4 72 54.2
Hma1.2p1_2351F.1_g320497 Hydrangea macrophylla HOM05D005070 ORTHO05D005987 2.2e-11 72.4 72 54.2
Psat7g153800 Pisum sativum HOM05D005070 ORTHO05D005987 2.2e-11 72.4 78 53.8
Psat7g156680 Pisum sativum HOM05D005070 ORTHO05D005987 1.1e-10 70.1 77 53.2
arahy.Tifrunner.gnm1.ann1.K5B2QX Arachis hypogaea HOM05D005070 ORTHO05D005987 4.1e-10 68.2 58 55.2
Mapoly0038s0062 Marchantia polymorpha HOM05D005070 ORTHO05D005987 4.1e-10 68.2 68 51.5
arahy.Tifrunner.gnm1.ann1.HW74CG Arachis hypogaea HOM05D005070 ORTHO05D005987 7.1e-10 67.4 58 55.2
Haze_07448 Corylus avellana HOM05D005070 ORTHO05D005987 7.1e-10 67.4 72 51.4
Zm00001eb098990 Zea mays HOM05D005070 ORTHO05D005987 9.2e-10 67.0 61 57.4
Zm00001eb311750 Zea mays HOM05D005070 ORTHO05D005987 1.2e-09 66.6 61 57.4
ClCG06G016770 Citrullus lanatus HOM05D005070 ORTHO05D005987 1.6e-09 66.2 76 48.7
HPP92_017066 Vanilla planifolia HOM05D005070 ORTHO05D005987 1.0e-08 63.5 85 44.7
SEGI_14877 Sequoiadendron giganteum HOM05D005070 ORTHO05D005987 1.7e-08 62.8 62 51.6
HPP92_017347 Vanilla planifolia HOM05D005070 ORTHO05D005987 3.9e-08 61.6 61 50.8
arahy.Tifrunner.gnm1.ann1.67M40U Arachis hypogaea HOM05D005070 ORTHO05D005987 8.6e-08 60.5 53 56.6
SalBow3G2397 Salvia bowleyana HOM05D005070 ORTHO05D005987 1.5e-07 59.7 76 46.1
C08p19280 Brassica napus HOM05D000130 ORTHO05D000257 1.9e-07 59.3 67 52.2
Manes.14G069501 Manihot esculenta HOM05D005070 ORTHO05D005987 2.5e-07 58.9 89 42.7
Os09g0382500 Oryza sativa ssp. japonica HOM05D005070 ORTHO05D005987 5.6e-07 57.8 58 50.0
PGSC0003DMG400027010 Solanum tuberosum HOM05D000366 ORTHO05D001950 5.6e-07 57.8 65 49.2
BolC8t49547H Brassica oleracea HOM05D000130 ORTHO05D000001 1.2e-06 56.6 53 52.8
Pp3c7_6970 Physcomitrium patens HOM05D005070 ORTHO05D005987 1.2e-06 56.6 82 37.8
AagrBONN_evm.TU.Sc2ySwM_344.5276 Anthoceros agrestis HOM05D005070 ORTHO05D005987 2.1e-06 55.8 69 40.6


User provided reference genes

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