Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA232G1788 Erigeron canadensis HOM05D004237 ORTHO05D005002 1.4e-182 642.9 332 100.0
HanXRQChr09g0262291 Helianthus annuus HOM05D004237 ORTHO05D005002 1.0e-116 424.1 359 67.1
Lsat_1_v5_gn_4_154701 Lactuca sativa HOM05D004237 ORTHO05D005002 1.8e-102 376.7 375 62.9
CSS0027261 Camellia sinensis var. sinensis HOM05D004237 ORTHO05D005002 3.1e-102 375.9 399 56.4
Sopen02g035740 Solanum pennellii HOM05D004237 ORTHO05D005002 4.1e-102 375.6 382 55.8
Nitab4.5_0002248g0060 Nicotiana tabacum HOM05D004237 ORTHO05D005002 4.5e-101 372.1 382 55.2
Dinv14873 Davidia involucrata HOM05D004237 ORTHO05D005002 8.5e-100 367.9 375 58.7
Solyc02g091090.4 Solanum lycopersicum HOM05D004237 ORTHO05D005002 2.1e-98 363.2 371 55.5
Actinidia17655 Actinidia chinensis HOM05D004237 ORTHO05D005002 3.9e-97 359.0 354 57.6
Cc07_g08200 Coffea canephora HOM05D004237 ORTHO05D005002 6.7e-97 358.2 388 54.6
Prupe.3G158400 Prunus persica HOM05D004237 ORTHO05D005002 1.1e-96 357.5 405 55.1
Cfa007846 Carpinus fangiana HOM05D004237 ORTHO05D005002 4.8e-95 352.1 408 52.2
MD09G1261100 Malus domestica HOM05D004237 ORTHO05D005002 8.2e-95 351.3 409 53.3
Gohir.A05G279600 Gossypium hirsutum HOM05D004237 ORTHO05D005002 4.1e-94 349.0 398 54.3
Gorai.009G294600 Gossypium raimondii HOM05D004237 ORTHO05D005002 4.1e-94 349.0 398 53.8
Gohir.D05G281200 Gossypium hirsutum HOM05D004237 ORTHO05D005002 5.9e-93 345.1 397 53.4
EL10Ac2g04487 Beta vulgaris HOM05D004237 ORTHO05D005002 1.3e-92 344.0 390 51.3
TAR633G2403 Trochodendron aralioides HOM05D004237 ORTHO05D005002 1.3e-92 344.0 391 51.2
Haze_14220 Corylus avellana HOM05D004237 ORTHO05D005002 2.2e-92 343.2 401 51.9
DCAR_025876 Daucus carota HOM05D004237 ORTHO05D005002 2.2e-92 343.2 381 55.6
FvH4_7g06071 Fragaria vesca HOM05D004237 ORTHO05D005002 3.8e-92 342.4 405 52.1
Duzib106G0201 Durio zibethinus HOM05D004237 ORTHO05D005002 1.9e-91 340.1 397 53.9
RcHm_v2.0_Chr7g0221661 Rosa chinensis HOM05D004237 ORTHO05D005002 9.4e-91 337.8 401 52.9
Sabra04G0058600 Salix brachista HOM05D004237 ORTHO05D005002 9.4e-91 337.8 403 51.4
AUR62023243 Chenopodium quinoa HOM05D004237 ORTHO05D005002 4.7e-90 335.5 390 52.3
FAN06G1641 Fragaria x ananassa HOM05D004237 ORTHO05D005002 6.1e-90 335.1 404 51.2
Sc11g0008610 Simmondsia chinensis HOM05D004237 ORTHO05D005002 8.0e-90 334.7 372 53.8
Hund16204 Selenicereus undatus HOM05D004237 ORTHO05D005002 1.4e-89 334.0 401 50.4
CiPaw.03G068200 Carya illinoinensis HOM05D004237 ORTHO05D005002 2.3e-89 333.2 392 50.5
Oeu047420.1 Olea europaea HOM05D004237 ORTHO05D005002 5.2e-89 332.0 339 57.5
CAN.G625.84 Capsicum annuum HOM05D004237 ORTHO05D005002 2.0e-88 330.1 347 55.3
Atru.chr4.1671 Acer truncatum HOM05D004237 ORTHO05D005002 2.6e-88 329.7 391 52.9
Rhsim08G0085800 Rhododendron simsii HOM05D004237 ORTHO05D005002 4.4e-88 328.9 373 56.3
Manes.03G011500 Manihot esculenta HOM05D004237 ORTHO05D005002 6.3e-87 325.1 396 51.5
Phvul.008G233700 Phaseolus vulgaris HOM05D004237 ORTHO05D005002 6.3e-87 325.1 351 53.8
Potri.004G088000 Populus trichocarpa HOM05D004237 ORTHO05D005002 4.1e-86 322.4 401 49.9
SalBow3G4435 Salvia bowleyana HOM05D004237 ORTHO05D005002 4.1e-86 322.4 397 49.6
Migut.H00265 Erythranthe guttata HOM05D004237 ORTHO05D005002 5.9e-85 318.5 398 51.5
Glyma.02G247200 Glycine max HOM05D004237 ORTHO05D005002 5.9e-85 318.5 355 53.0
Thecc.10G175300 Theobroma cacao HOM05D004237 ORTHO05D005002 1.3e-84 317.4 397 51.6
GSVIVG01030867001 Vitis vinifera HOM05D004237 ORTHO05D005002 2.2e-84 316.6 359 53.8
Aqoxy5G01640 Aquilegia oxysepala HOM05D004237 ORTHO05D005002 1.5e-83 313.9 400 48.5
Nn3g18884 Nelumbo nucifera HOM05D004237 ORTHO05D005002 1.9e-83 313.5 405 47.9
Cpa.g.sc118.40 Carica papaya HOM05D004237 ORTHO05D005002 5.5e-83 312.0 353 54.7
PGR004G2154 Punica granatum HOM05D004237 ORTHO05D005002 8.0e-82 308.1 413 48.7
SGA_v2.0_scaffold149G36490 Striga asiatica HOM05D004237 ORTHO05D005002 1.0e-81 307.8 380 48.9
Sed0014224 Sechium edule HOM05D004237 ORTHO05D005002 1.4e-81 307.4 388 48.7
CANSAT54G2538 Cannabis sativa HOM05D004237 ORTHO05D005002 1.3e-76 290.8 428 45.3
arahy.Tifrunner.gnm1.ann1.MQJ11K Arachis hypogaea HOM05D004237 ORTHO05D005002 2.2e-76 290.0 369 50.4
Lalb_Chr10g0104521 Lupinus albus HOM05D004237 ORTHO05D005002 2.2e-76 290.0 351 54.4
MELO3C020294.2 Cucumis melo HOM05D004237 ORTHO05D005002 1.1e-75 287.7 414 46.4
Eucgr.F02819 Eucalyptus grandis HOM05D004237 ORTHO05D005002 1.5e-75 287.3 436 43.8
SHI19441 Sapria himalayana HOM05D004237 ORTHO05D005002 3.2e-75 286.2 386 45.6
ClCG05G010910 Citrullus lanatus HOM05D004237 ORTHO05D005002 4.2e-75 285.8 413 47.5
CsaV3_3G021670 Cucumis sativus L. HOM05D004237 ORTHO05D005002 9.4e-75 284.6 412 45.9
LjContig00141g0018818 Lotus japonicus HOM05D004237 ORTHO05D005002 2.3e-73 280.0 342 51.2
arahy.Tifrunner.gnm1.ann1.68W1N1 Arachis hypogaea HOM05D004237 ORTHO05D005002 3.4e-72 276.2 368 48.9
QL11p004173 Quercus lobata HOM05D004237 ORTHO05D005002 9.8e-72 274.6 412 44.9
Psat2g041040 Pisum sativum HOM05D004237 ORTHO05D005002 3.7e-71 272.7 360 48.9
Medtr5g079680 Medicago truncatula HOM05D004237 ORTHO05D005002 1.3e-68 264.2 346 50.9
unitig_899.g14517 Utricularia gibba HOM05D004236 ORTHO05D004903 1.7e-68 263.8 387 43.2
Hma1.2p1_3512F.1_g336510 Hydrangea macrophylla HOM05D004237 ORTHO05D005002 2.9e-68 263.1 346 49.4
TPR.G3499 Trifolium pratense HOM05D004237 ORTHO05D005002 3.3e-67 259.6 352 47.4
Ca_05866_v3 Cicer arietinum L. HOM05D004237 ORTHO05D005002 4.0e-65 252.7 363 45.7
Ca_29976_v3 Cicer arietinum L. HOM05D004237 ORTHO05D005002 4.0e-65 252.7 363 45.7
Nitab4.5_0004399g0090 Nicotiana tabacum HOM05D004237 ORTHO05D005002 1.1e-59 234.6 299 48.5
Peaxi162Scf00003g00001 Petunia axillaris HOM05D004237 ORTHO05D005002 3.2e-54 216.5 305 46.6
CDE09G1075 Ceratophyllum demersum HOM05D004237 ORTHO05D005002 7.8e-53 211.8 352 40.9
CDE02G0048 Ceratophyllum demersum HOM05D004237 ORTHO05D005002 2.8e-50 203.4 257 46.7
AUR62023195 Chenopodium quinoa HOM05D004237 ORTHO05D005002 2.3e-44 183.7 272 44.9
Lj2P435T33 Lonicera japonica HOM05D004237 ORTHO05D005002 3.9e-44 183.0 270 50.4
MBI08_g18909_MAGBIO Magnolia biondii HOM05D004237 ORTHO05D005002 1.1e-43 181.4 279 45.9
SEGI_05374 Sequoiadendron giganteum HOM05D004237 ORTHO05D005002 1.9e-43 180.6 455 32.3
ATR0743G026 Amborella trichopoda HOM05D004237 ORTHO05D005002 4.4e-40 169.5 453 32.0
Glyma.14G069000 Glycine max HOM05D004237 ORTHO05D005002 2.2e-39 167.2 287 43.6
Cpa.g.sc83.32 Carica papaya HOM05D004237 ORTHO05D005002 1.6e-37 161.0 166 51.2
ATR0561G250 Amborella trichopoda HOM05D004237 ORTHO05D005002 7.8e-37 158.7 167 49.1
Phvul.003G050200 Phaseolus vulgaris HOM05D004237 ORTHO05D005002 1.7e-36 157.5 161 49.7
DCAR_030819 Daucus carota HOM05D004237 ORTHO05D005002 2.3e-36 157.1 186 46.2
Medtr8g085190 Medicago truncatula HOM05D004237 ORTHO05D005002 3.9e-36 156.4 159 50.3
Glyma.05G153300 Glycine max HOM05D004237 ORTHO05D005002 6.6e-36 155.6 210 43.8
TAR636G2161 Trochodendron aralioides HOM05D004237 ORTHO05D005002 6.6e-36 155.6 173 48.6
Actinidia11451 Actinidia chinensis HOM05D004237 ORTHO05D005002 8.6e-36 155.2 179 48.0
Cfa014954 Carpinus fangiana HOM05D004237 ORTHO05D005002 8.6e-36 155.2 132 55.3
arahy.Tifrunner.gnm1.ann1.BLV0FA Arachis hypogaea HOM05D004237 ORTHO05D005002 1.1e-35 154.8 126 56.3
arahy.Tifrunner.gnm1.ann1.T9JHLZ Arachis hypogaea HOM05D004237 ORTHO05D005002 1.1e-35 154.8 126 56.3
Peaxi162Scf00047g00110 Petunia axillaris HOM05D004237 ORTHO05D005002 1.1e-35 154.8 174 48.3
MELO3C020354.2 Cucumis melo HOM05D004237 ORTHO05D005002 1.5e-35 154.5 183 47.5
Rhsim02G0061200 Rhododendron simsii HOM05D004237 ORTHO05D005002 1.9e-35 154.1 118 61.9
RhsimUnG0035800 Rhododendron simsii HOM05D004237 ORTHO05D005002 1.9e-35 154.1 118 61.9
Potri.001G318600 Populus trichocarpa HOM05D004237 ORTHO05D005002 4.3e-35 152.9 193 44.0
SEGI_20207 Sequoiadendron giganteum HOM05D004237 ORTHO05D005002 4.3e-35 152.9 179 47.5
HanXRQChr15g0484241 Helianthus annuus HOM05D004237 ORTHO05D005002 5.6e-35 152.5 366 32.8
Psat7g073000 Pisum sativum HOM05D004237 ORTHO05D005002 5.6e-35 152.5 119 58.8
Sc13g0000310 Simmondsia chinensis HOM05D004237 ORTHO05D005002 5.6e-35 152.5 280 37.9
CBR_g29388 Chara braunii HOM05D004237 ORTHO05D005002 7.3e-35 152.1 121 57.0
CsaV3_2G011170 Cucumis sativus L. HOM05D004237 ORTHO05D005002 7.3e-35 152.1 183 46.4
Eucgr.H02692 Eucalyptus grandis HOM05D004237 ORTHO05D005002 7.3e-35 152.1 171 49.1
Lj4g0001711 Lotus japonicus HOM05D004237 ORTHO05D005002 7.3e-35 152.1 125 56.0
PGSC0003DMG400026424 Solanum tuberosum HOM05D004237 ORTHO05D005002 7.3e-35 152.1 165 49.1
Lsat_1_v5_gn_2_45661 Lactuca sativa HOM05D004237 ORTHO05D005002 9.5e-35 151.8 128 56.2
Thecc.04G196500 Theobroma cacao HOM05D004237 ORTHO05D005002 9.5e-35 151.8 131 55.0
MBI11_g07416_MAGBIO Magnolia biondii HOM05D004237 ORTHO05D005002 1.2e-34 151.4 253 42.3
Atru.chr4.1600 Acer truncatum HOM05D004237 ORTHO05D005002 2.1e-34 150.6 186 45.7
Dinv27207 Davidia involucrata HOM05D004237 ORTHO05D005002 2.1e-34 150.6 192 45.8
Gohir.A10G128300 Gossypium hirsutum HOM05D004237 ORTHO05D005002 2.1e-34 150.6 133 53.4
Hma1.2p1_2958F.1_g330800 Hydrangea macrophylla HOM05D004237 ORTHO05D005002 2.1e-34 150.6 187 45.5
Sabra16G0201600 Salix brachista HOM05D004237 ORTHO05D005002 2.1e-34 150.6 193 43.5
TPR.G11799 Trifolium pratense HOM05D004237 ORTHO05D005002 2.8e-34 150.2 128 54.7
Prupe.1G163000 Prunus persica HOM05D004237 ORTHO05D005002 4.7e-34 149.4 213 43.2
unitig_45.g31537 Utricularia gibba HOM05D004237 ORTHO05D005002 4.7e-34 149.4 119 56.3
unitig_578.g16513 Utricularia gibba HOM05D004237 ORTHO05D005002 4.7e-34 149.4 119 56.3
Haze_11643 Corylus avellana HOM05D004237 ORTHO05D005002 6.2e-34 149.1 181 47.0
Lalb_Chr07g0186771 Lupinus albus HOM05D004237 ORTHO05D005002 6.2e-34 149.1 157 48.4
Nitab4.5_0007828g0040 Nicotiana tabacum HOM05D004237 ORTHO05D005002 6.2e-34 149.1 166 49.4
Solyc09g092210.4 Solanum lycopersicum HOM05D004237 ORTHO05D005002 6.2e-34 149.1 165 48.5
Sopen09g035130 Solanum pennellii HOM05D004237 ORTHO05D005002 6.2e-34 149.1 165 48.5
SGA_v2.0_scaffold31G12582 Striga asiatica HOM05D004237 ORTHO05D005002 6.2e-34 149.1 202 44.6
vmacro15560 Vaccinium macrocarpon HOM05D004237 ORTHO05D005002 6.2e-34 149.1 166 52.4
VMungo0251G2499 Vigna mungo HOM05D004237 ORTHO05D005002 6.2e-34 149.1 226 42.9
CSS0022501 Camellia sinensis var. sinensis HOM05D004237 ORTHO05D005002 8.1e-34 148.7 158 51.9
MD13G1282300 Malus domestica HOM05D004237 ORTHO05D005002 8.1e-34 148.7 195 45.6
Actinidia28992 Actinidia chinensis HOM05D004237 ORTHO05D005002 1.1e-33 148.3 159 49.7
CAN.G1565.17 Capsicum annuum HOM05D004237 ORTHO05D005002 1.1e-33 148.3 177 48.0
Ca_17976_v3 Cicer arietinum L. HOM05D004237 ORTHO05D005002 1.1e-33 148.3 164 48.8
Sabra17G0051800 Salix brachista HOM05D004237 ORTHO05D005002 1.1e-33 148.3 192 43.2
CiPaw.01G118000 Carya illinoinensis HOM05D004237 ORTHO05D005002 1.4e-33 147.9 182 46.7
Ciclev10004964m.g Citrus clementina HOM05D004237 ORTHO05D005002 1.4e-33 147.9 139 50.4
Oeu025033.1 Olea europaea HOM05D004237 ORTHO05D005002 1.8e-33 147.5 170 47.6
Oeu063463.1 Olea europaea HOM05D004237 ORTHO05D005002 2.4e-33 147.1 173 48.0
FAN12G1632 Fragaria x ananassa HOM05D004237 ORTHO05D005002 3.1e-33 146.7 193 45.1
Dinv38185 Davidia involucrata HOM05D004237 ORTHO05D005002 5.2e-33 146.0 184 47.3
MSTRG.21980 Avicennia marina HOM05D004237 ORTHO05D005002 8.9e-33 145.2 187 44.9
FvH4_4g13400 Fragaria vesca HOM05D004237 ORTHO05D005002 8.9e-33 145.2 193 44.6
MD04G1016300 Malus domestica HOM05D004237 ORTHO05D005002 8.9e-33 145.2 200 43.0
RcHm_v2.0_Chr4g0413771 Rosa chinensis HOM05D004237 ORTHO05D005002 8.9e-33 145.2 212 43.4
Manes.03G145100 Manihot esculenta HOM05D004237 ORTHO05D005002 1.2e-32 144.8 189 46.0
Mapoly0008s0013 Marchantia polymorpha HOM05D004237 ORTHO05D005002 1.5e-32 144.4 425 32.0
Potri.017G058200 Populus trichocarpa HOM05D004237 ORTHO05D005002 3.4e-32 143.3 303 35.6
GSVIVG01021000001 Vitis vinifera HOM05D004237 ORTHO05D005002 3.4e-32 143.3 310 33.9
Duzib212G0922 Durio zibethinus HOM05D004237 ORTHO05D005002 4.4e-32 142.9 190 42.6
FAN07G1461 Fragaria x ananassa HOM05D004237 ORTHO05D005002 4.4e-32 142.9 193 44.0
Manes.15G056100 Manihot esculenta HOM05D004237 ORTHO05D005002 4.4e-32 142.9 147 46.9
HPP92_024243 Vanilla planifolia HOM05D004237 ORTHO05D005002 4.9e-31 139.4 117 56.4
Aqoxy2G03968 Aquilegia oxysepala HOM05D004237 ORTHO05D005002 1.9e-30 137.5 207 40.1
CANSAT78G0306 Cannabis sativa HOM05D004237 ORTHO05D005002 9.2e-30 135.2 246 39.8
CDE05G0646 Ceratophyllum demersum HOM05D004237 ORTHO05D005002 9.2e-30 135.2 303 36.6
QL06p026437 Quercus lobata HOM05D004237 ORTHO05D005002 9.2e-30 135.2 100 62.0
RcHm_v2.0_Chr1g0334211 Rosa chinensis HOM05D004237 ORTHO05D005002 9.2e-30 135.2 262 37.0
ECA238G4613 Erigeron canadensis HOM05D004237 ORTHO05D005002 3.9e-28 129.8 155 47.7
COL.COLO4_20213 Corchorus olitorius HOM05D004237 ORTHO05D005002 3.3e-27 126.7 167 44.3
AUR62020847 Chenopodium quinoa HOM05D004237 ORTHO05D005002 9.6e-27 125.2 151 47.0
Gohir.D10G137600 Gossypium hirsutum HOM05D004237 ORTHO05D005002 1.1e-25 121.7 170 42.4
Gorai.011G152800 Gossypium raimondii HOM05D004237 ORTHO05D005002 1.8e-25 120.9 168 42.9
Migut.N00416 Erythranthe guttata HOM05D004237 ORTHO05D005002 2.4e-25 120.6 185 41.1
Sed0001983 Sechium edule HOM05D004237 ORTHO05D005002 2.9e-23 113.6 251 34.7
RcHm_v2.0_Chr1g0333491 Rosa chinensis HOM05D003866 ORTHO05D004508 4.2e-22 109.8 95 60.0
RcHm_v2.0_Chr1g0333501 Rosa chinensis HOM05D004237 ORTHO05D005002 2.3e-20 104.0 172 41.3
PSO017G6634 Papaver somniferum HOM05D004237 ORTHO05D005002 3.0e-12 77.0 165 34.5
SHI01026 Sapria himalayana HOM05D004237 ORTHO05D005002 1.9e-06 57.8 65 47.7


User provided reference genes

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