Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA232G1778 Erigeron canadensis HOM05D001907 ORTHO05D011097 1.2e-169 599.7 306 100.0
Lsat_1_v5_gn_4_133000 Lactuca sativa HOM05D001907 ORTHO05D011097 3.0e-43 179.9 268 46.3
Lj2A618T24 Lonicera japonica HOM05D009190 ORTHO05D011097 9.8e-18 95.1 169 34.3
Nitab4.5_0003552g0010 Nicotiana tabacum HOM05D001907 ORTHO05D011097 2.4e-16 90.5 68 63.2
Actinidia12289 Actinidia chinensis HOM05D001907 ORTHO05D011097 2.0e-15 87.4 185 37.3
Lju1609C0T1 Lonicera japonica HOM05D009190 ORTHO05D011097 7.7e-15 85.5 69 58.0
Lju1220C0T2 Lonicera japonica HOM05D009190 ORTHO05D011097 2.3e-14 84.0 190 32.6
Lju114A2T28 Lonicera japonica HOM05D009190 ORTHO05D011097 2.9e-14 83.6 69 56.5
Lju225A5T26 Lonicera japonica HOM05D009190 ORTHO05D011097 3.8e-14 83.2 69 56.5
Dinv00569 Davidia involucrata HOM05D001907 ORTHO05D011097 1.9e-13 80.9 201 34.8
Ciclev10019343m.g Citrus clementina HOM05D001907 ORTHO05D002387 4.0e-11 73.2 144 35.4
Migut.N01634 Erythranthe guttata HOM05D001907 ORTHO05D002387 1.2e-10 71.6 69 44.9
Lsat_1_v5_gn_4_43261 Lactuca sativa HOM05D001907 ORTHO05D002387 1.2e-10 71.6 96 37.5
CDE01G0029 Ceratophyllum demersum HOM05D001907 ORTHO05D002387 2.0e-10 70.9 68 47.1
HanXRQChr16g0520151 Helianthus annuus HOM05D001907 ORTHO05D002387 2.0e-10 70.9 102 36.3
Sopen01g037080 Solanum pennellii HOM05D001907 ORTHO05D002387 2.6e-10 70.5 100 39.0
PGSC0003DMG400012775 Solanum tuberosum HOM05D001907 ORTHO05D002387 2.6e-10 70.5 100 39.0
Thecc.07G183800 Theobroma cacao HOM05D001907 ORTHO05D002387 2.6e-10 70.5 172 29.7
CDE02G3340 Ceratophyllum demersum HOM05D004848 ORTHO05D006859 3.4e-10 70.1 195 29.7
Gorai.002G109600 Gossypium raimondii HOM05D001907 ORTHO05D002387 4.4e-10 69.7 234 27.8
MELO3C006832.2 Cucumis melo HOM05D001907 ORTHO05D002387 5.7e-10 69.3 68 48.5
CAN.G388.15 Capsicum annuum HOM05D001907 ORTHO05D002387 7.5e-10 68.9 256 27.7
CsaV3_3G016330 Cucumis sativus L. HOM05D001907 ORTHO05D002387 7.5e-10 68.9 68 48.5
CsaV3_6G006170 Cucumis sativus L. HOM05D001907 ORTHO05D002387 7.5e-10 68.9 148 33.1
Gohir.A01G099300 Gossypium hirsutum HOM05D001907 ORTHO05D002387 7.5e-10 68.9 234 28.2
Nn4g26408 Nelumbo nucifera HOM05D001907 ORTHO05D002387 7.5e-10 68.9 94 42.6
Actinidia07536 Actinidia chinensis HOM05D001907 ORTHO05D011097 9.8e-10 68.6 94 41.5
MSTRG.17193 Avicennia marina HOM05D001907 ORTHO05D002387 9.8e-10 68.6 67 44.8
RcHm_v2.0_Chr1g0350561 Rosa chinensis HOM05D001907 ORTHO05D002387 9.8e-10 68.6 69 44.9
Atru.chr9.36 Acer truncatum HOM05D001907 ORTHO05D002387 1.3e-09 68.2 121 35.5
Ah.03g147890 Amaranthus hybridus HOM05D007202 ORTHO05D009125 1.3e-09 68.2 71 49.3
AT3G12340 Arabidopsis thaliana HOM05D001907 ORTHO05D002387 1.3e-09 68.2 124 32.3
Cc02_g36710 Coffea canephora HOM05D001907 ORTHO05D002387 1.3e-09 68.2 144 33.3
SGA_v2.0_scaffold52G19099 Striga asiatica HOM05D001907 ORTHO05D030686 1.3e-09 68.2 66 48.5
MSTRG.8803 Avicennia marina HOM05D001907 ORTHO05D002387 1.7e-09 67.8 99 38.4
BcaB03g16311 Brassica carinata HOM05D001907 ORTHO05D002387 1.7e-09 67.8 69 42.0
MELO3C022502.2 Cucumis melo HOM05D001907 ORTHO05D002387 1.7e-09 67.8 68 47.1
ClCG06G000380 Citrullus lanatus HOM05D001907 ORTHO05D002387 2.2e-09 67.4 69 44.9
QL01p040141 Quercus lobata HOM05D001907 ORTHO05D002387 2.2e-09 67.4 98 38.8
Sed0001551 Sechium edule HOM05D001907 ORTHO05D002387 2.2e-09 67.4 69 46.4
SGA_v2.0_scaffold153G37010 Striga asiatica HOM05D001907 ORTHO05D002387 2.2e-09 67.4 68 47.1
GSVIVG01018518001 Vitis vinifera HOM05D001907 ORTHO05D002387 2.2e-09 67.4 296 25.7
C04p49420 Brassica napus HOM05D001907 ORTHO05D002387 2.9e-09 67.0 152 32.2
PGSC0003DMG400031007 Solanum tuberosum HOM05D001907 ORTHO05D002387 2.9e-09 67.0 66 48.5
TAR629G1526 Trochodendron aralioides HOM05D001907 ORTHO05D002387 2.9e-09 67.0 84 42.9
BcaC06g36755 Brassica carinata HOM05D001907 ORTHO05D002387 3.7e-09 66.6 69 40.6
C07p00310 Brassica napus HOM05D001907 ORTHO05D002387 3.7e-09 66.6 69 40.6
BolC7t40480H Brassica oleracea HOM05D001907 ORTHO05D002387 3.7e-09 66.6 69 40.6
Aqoxy7G00628 Aquilegia oxysepala HOM05D001907 ORTHO05D002387 4.9e-09 66.2 68 44.1
ClCG05G007470 Citrullus lanatus HOM05D000898 ORTHO05D000762 4.9e-09 66.2 68 48.5
Lj2g0001614 Lotus japonicus HOM05D001907 ORTHO05D002387 4.9e-09 66.2 105 37.1
MBI03_g16542_MAGBIO Magnolia biondii HOM05D001907 ORTHO05D002387 4.9e-09 66.2 59 47.5
AL3G23980 Arabidopsis lyrata HOM05D001907 ORTHO05D002387 6.3e-09 65.9 146 29.5
Dinv43711 Davidia involucrata HOM05D001907 ORTHO05D002387 6.3e-09 65.9 299 25.8
Sed0007034 Sechium edule HOM05D000898 ORTHO05D000762 6.3e-09 65.9 68 48.5
TAR374G0814 Trochodendron aralioides HOM05D001907 ORTHO05D002387 6.3e-09 65.9 60 46.7
Cpa.g.sc15.40 Carica papaya HOM05D001907 ORTHO05D002387 8.3e-09 65.5 71 43.7
Cc00_g02890 Coffea canephora HOM05D001907 ORTHO05D011097 8.3e-09 65.5 65 50.8
Migut.A01098 Erythranthe guttata HOM05D001907 ORTHO05D002387 8.3e-09 65.5 104 33.7
Lsat_1_v5_gn_9_52620 Lactuca sativa HOM05D001907 ORTHO05D002387 8.3e-09 65.5 161 28.6
BcaB06g27691 Brassica carinata HOM05D001907 ORTHO05D002387 1.1e-08 65.1 165 29.1
Migut.F00433 Erythranthe guttata HOM05D001907 ORTHO05D002387 1.1e-08 65.1 66 48.5
MD00G1063900 Malus domestica HOM05D001907 ORTHO05D002387 1.1e-08 65.1 149 28.2
SalBow5G0762 Salvia bowleyana HOM05D001907 ORTHO05D002387 1.1e-08 65.1 321 28.3
unitig_8.g4982 Utricularia gibba HOM05D001907 ORTHO05D002387 1.1e-08 65.1 322 26.4
Sabra07G0000500 Salix brachista HOM05D001663 ORTHO05D003186 1.4e-08 64.7 68 50.0
TAR629G1911 Trochodendron aralioides HOM05D001907 ORTHO05D002387 1.4e-08 64.7 68 45.6
Actinidia12686 Actinidia chinensis HOM05D001907 ORTHO05D002387 1.8e-08 64.3 68 44.1
MSTRG.4891 Avicennia marina HOM05D001907 ORTHO05D002387 1.8e-08 64.3 227 28.2
ECA232G1417 Erigeron canadensis HOM05D001907 ORTHO05D002387 1.8e-08 64.3 72 43.1
Rhsim11G0052300 Rhododendron simsii HOM05D001907 ORTHO05D002387 1.8e-08 64.3 68 42.6
SalBow5G0888 Salvia bowleyana HOM05D001907 ORTHO05D002387 1.8e-08 64.3 68 48.5
Solyc03g007170.3 Solanum lycopersicum HOM05D001907 ORTHO05D002387 1.8e-08 64.3 121 35.5
AT4G25340 Arabidopsis thaliana HOM05D001907 ORTHO05D002387 2.4e-08 63.9 68 48.5
Haze_16814 Corylus avellana HOM05D001907 ORTHO05D002387 2.4e-08 63.9 72 45.8
Nitab4.5_0000072g0450 Nicotiana tabacum HOM05D001907 ORTHO05D002387 2.4e-08 63.9 66 47.0
Nitab4.5_0007960g0020 Nicotiana tabacum HOM05D001907 ORTHO05D002387 2.4e-08 63.9 66 47.0
Oeu022503.1 Olea europaea HOM05D001907 ORTHO05D002387 2.4e-08 63.9 66 48.5
Peaxi162Scf01372g00046 Petunia axillaris HOM05D001907 ORTHO05D002387 2.4e-08 63.9 66 47.0
PGR142G0970 Punica granatum HOM05D001907 ORTHO05D002387 2.4e-08 63.9 68 45.6
Aqoxy4G01542 Aquilegia oxysepala HOM05D001907 ORTHO05D002387 3.2e-08 63.5 74 44.6
Aqoxy4G01587 Aquilegia oxysepala HOM05D001907 ORTHO05D002387 3.2e-08 63.5 71 46.5
AL3G51650 Arabidopsis lyrata HOM05D001907 ORTHO05D002387 3.2e-08 63.5 80 40.0
Ciclev10004843m.g Citrus clementina HOM05D001907 ORTHO05D002387 3.2e-08 63.5 66 50.0
Os09g0293900 Oryza sativa ssp. japonica HOM05D001907 ORTHO05D002387 3.2e-08 63.5 116 34.5
PSO478G0067 Papaver somniferum HOM05D001907 ORTHO05D011097 3.2e-08 63.5 66 50.0
SalBow4G2192 Salvia bowleyana HOM05D001907 ORTHO05D002387 3.2e-08 63.5 66 45.5
SalBow4G3260 Salvia bowleyana HOM05D001907 ORTHO05D002387 3.2e-08 63.5 66 45.5
ECA234G4376 Erigeron canadensis HOM05D002123 ORTHO05D002163 4.1e-08 63.2 309 25.9
Gohir.D01G083900 Gossypium hirsutum HOM05D001907 ORTHO05D002387 5.4e-08 62.8 63 49.2
Lj1A984T84 Lonicera japonica HOM05D001907 ORTHO05D002387 5.4e-08 62.8 90 38.9
LjContig00222g0001670 Lotus japonicus HOM05D001907 ORTHO05D002387 5.4e-08 62.8 88 36.4
TAR629G2215 Trochodendron aralioides HOM05D001907 ORTHO05D011097 5.4e-08 62.8 323 23.8
AL7G27790 Arabidopsis lyrata HOM05D001907 ORTHO05D002387 7.0e-08 62.4 68 47.1
EL10Ac9g22970 Beta vulgaris HOM05D001907 ORTHO05D002387 7.0e-08 62.4 176 31.8
SalBow5G3617 Salvia bowleyana HOM05D001907 ORTHO05D002387 7.0e-08 62.4 289 28.0
Hund04635 Selenicereus undatus HOM05D001907 ORTHO05D002387 7.0e-08 62.4 67 46.3
Hund08617 Selenicereus undatus HOM05D001907 ORTHO05D002387 7.0e-08 62.4 247 25.9
Cpa.g.sc3.275 Carica papaya HOM05D001907 ORTHO05D002387 9.2e-08 62.0 69 46.4
Lj7C528G7 Lonicera japonica HOM05D001907 ORTHO05D002387 9.2e-08 62.0 190 27.9
Sopen03g003150 Solanum pennellii HOM05D001907 ORTHO05D002387 9.2e-08 62.0 66 45.5
Ah.07g208240 Amaranthus hybridus HOM05D001907 ORTHO05D002387 1.2e-07 61.6 68 42.6
ECA234G4740 Erigeron canadensis HOM05D001907 ORTHO05D002387 1.2e-07 61.6 236 27.1
Nn3g20632 Nelumbo nucifera HOM05D001907 ORTHO05D002387 1.2e-07 61.6 288 27.4
THA.LOC104800062 Tarenaya hassleriana HOM05D001907 ORTHO05D002387 1.2e-07 61.6 316 27.8
AUR62016106 Chenopodium quinoa HOM05D001907 ORTHO05D002387 1.6e-07 61.2 98 35.7
FAN10G0625 Fragaria x ananassa HOM05D001907 ORTHO05D002387 1.6e-07 61.2 67 49.3
Oeu042583.1 Olea europaea HOM05D001907 ORTHO05D002387 1.6e-07 61.2 66 47.0
Psat7g226200 Pisum sativum HOM05D001907 ORTHO05D002387 1.6e-07 61.2 138 31.2
CANSAT56G0923 Cannabis sativa HOM05D001907 ORTHO05D002387 2.0e-07 60.8 66 45.5
DCAR_015904 Daucus carota HOM05D001907 ORTHO05D002387 2.0e-07 60.8 61 44.3
Medtr5g008680 Medicago truncatula HOM05D001907 ORTHO05D002387 2.0e-07 60.8 117 31.6
Carub.0003s1169 Capsella rubella HOM05D001907 ORTHO05D002387 2.7e-07 60.5 302 24.5
Carub.0007s1567 Capsella rubella HOM05D001907 ORTHO05D002387 2.7e-07 60.5 103 38.8
Haze_13829 Corylus avellana HOM05D001907 ORTHO05D002387 3.5e-07 60.1 121 37.2
Eucgr.B01534 Eucalyptus grandis HOM05D001907 ORTHO05D002387 3.5e-07 60.1 86 38.4
Gohir.A09G044100 Gossypium hirsutum HOM05D001907 ORTHO05D002387 3.5e-07 60.1 69 46.4
Manes.18G143600 Manihot esculenta HOM05D001907 ORTHO05D036639 3.5e-07 60.1 72 44.4
Nitab4.5_0000457g0300 Nicotiana tabacum HOM05D001907 ORTHO05D002387 3.5e-07 60.1 241 27.0
Sp7g23360 Schrenkiella parvula HOM05D001907 ORTHO05D002387 3.5e-07 60.1 68 45.6
Atru.chr1.639 Acer truncatum HOM05D001907 ORTHO05D002387 4.6e-07 59.7 68 47.1
Ca_19708_v3 Cicer arietinum L. HOM05D001907 ORTHO05D002387 4.6e-07 59.7 148 31.8
Thhalv10025104m.g Eutrema salsugineum HOM05D001907 ORTHO05D002387 4.6e-07 59.7 68 47.1
Gohir.D09G045400 Gossypium hirsutum HOM05D001907 ORTHO05D002387 4.6e-07 59.7 69 46.4
Gorai.006G065000 Gossypium raimondii HOM05D001907 ORTHO05D002387 4.6e-07 59.7 69 46.4
Prupe.2G145400 Prunus persica HOM05D001907 ORTHO05D002387 4.6e-07 59.7 233 23.6
VMungo0540G2205 Vigna mungo HOM05D001907 ORTHO05D002387 4.6e-07 59.7 107 37.4
Duzib213G0159 Durio zibethinus HOM05D001907 ORTHO05D002387 5.9e-07 59.3 280 27.1
FvH4_7g28142 Fragaria vesca HOM05D001907 ORTHO05D002387 5.9e-07 59.3 125 34.4
FAN06G2134 Fragaria x ananassa HOM05D001907 ORTHO05D002387 5.9e-07 59.3 125 34.4
Sp7g04930 Schrenkiella parvula HOM05D001907 ORTHO05D002387 5.9e-07 59.3 312 24.4
CSS0043271 Camellia sinensis var. sinensis HOM05D001907 ORTHO05D002387 7.8e-07 58.9 229 26.6
AUR62035052 Chenopodium quinoa HOM05D001907 ORTHO05D002387 7.8e-07 58.9 98 34.7
Solyc01g091340.3 Solanum lycopersicum HOM05D001907 ORTHO05D002387 7.8e-07 58.9 287 26.5
Aa31LG3G6550 Aethionema arabicum HOM05D001907 ORTHO05D002387 1.0e-06 58.5 243 25.9
Manes.14G033300 Manihot esculenta HOM05D001907 ORTHO05D002387 1.0e-06 58.5 103 38.8
EL10Ac3g05795 Beta vulgaris HOM05D001907 ORTHO05D002387 1.3e-06 58.2 67 41.8
CAN.G128.121 Capsicum annuum HOM05D001907 ORTHO05D015557 1.3e-06 58.2 62 45.2
CARHR232750 Cardamine hirsuta HOM05D001907 ORTHO05D002387 1.3e-06 58.2 66 42.4
Nn5g27135 Nelumbo nucifera HOM05D001907 ORTHO05D002387 1.3e-06 58.2 332 24.4
Oeu011934.1 Olea europaea HOM05D001907 ORTHO05D002387 1.3e-06 58.2 241 27.4
PSO782G3057 Papaver somniferum HOM05D001907 ORTHO05D002387 1.3e-06 58.2 68 45.6
THA.LOC104808290 Tarenaya hassleriana HOM05D001907 ORTHO05D002387 1.3e-06 58.2 117 29.9
COL.COLO4_16250 Corchorus olitorius HOM05D001907 ORTHO05D002387 1.7e-06 57.8 269 25.3
Thhalv10027735m.g Eutrema salsugineum HOM05D001907 ORTHO05D002387 1.7e-06 57.8 269 24.5
PSO782G3451 Papaver somniferum HOM05D001907 ORTHO05D002387 1.7e-06 57.8 66 42.4
arahy.Tifrunner.gnm1.ann1.7B1RJZ Arachis hypogaea HOM05D001907 ORTHO05D002387 2.3e-06 57.4 68 41.2
CSS0047059 Camellia sinensis var. sinensis HOM05D001907 ORTHO05D002387 2.3e-06 57.4 229 26.6
DCAR_020207 Daucus carota HOM05D001907 ORTHO05D002387 2.3e-06 57.4 66 40.9
Os04g0446500 Oryza sativa ssp. japonica HOM05D001907 ORTHO05D002387 2.3e-06 57.4 80 38.8
Phvul.011G000800 Phaseolus vulgaris HOM05D001907 ORTHO05D002387 2.3e-06 57.4 94 38.3
Dinv32376 Davidia involucrata HOM05D001907 ORTHO05D002387 2.9e-06 57.0 268 24.6
Duzib205G0190 Durio zibethinus HOM05D001907 ORTHO05D002387 2.9e-06 57.0 69 43.5
Lalb_Chr01g0000061 Lupinus albus HOM05D001907 ORTHO05D002387 2.9e-06 57.0 101 33.7
PSO782G5711 Papaver somniferum HOM05D001907 ORTHO05D002387 2.9e-06 57.0 58 48.3
THA.LOC104798646 Tarenaya hassleriana HOM05D001907 ORTHO05D002387 2.9e-06 57.0 97 35.1
THA.LOC104811511 Tarenaya hassleriana HOM05D001907 ORTHO05D002387 2.9e-06 57.0 84 38.1
HPP92_016052 Vanilla planifolia HOM05D001907 ORTHO05D002387 2.9e-06 57.0 214 28.5
Lj2g0024568 Lotus japonicus HOM05D001907 ORTHO05D002387 3.9e-06 56.6 168 30.4
Manes.02G213700 Manihot esculenta HOM05D001907 ORTHO05D002387 3.9e-06 56.6 234 27.4
QL08p052511 Quercus lobata HOM05D001907 ORTHO05D002387 3.9e-06 56.6 211 28.4
SGA_v2.0_scaffold10G05286 Striga asiatica HOM05D001907 ORTHO05D002387 3.9e-06 56.6 73 42.5
arahy.Tifrunner.gnm1.ann1.SH3RHJ Arachis hypogaea HOM05D001907 ORTHO05D002387 5.0e-06 56.2 120 32.5
Glyma.20G055800 Glycine max HOM05D001907 ORTHO05D002387 5.0e-06 56.2 188 29.3
Psat2g186640 Pisum sativum HOM05D001907 ORTHO05D002387 5.0e-06 56.2 100 32.0
QL12p039655 Quercus lobata HOM05D001907 ORTHO05D002387 5.0e-06 56.2 118 31.4
Rhsim03G0171200 Rhododendron simsii HOM05D001907 ORTHO05D002387 5.0e-06 56.2 222 27.0
CARHR086870 Cardamine hirsuta HOM05D001907 ORTHO05D002387 6.6e-06 55.8 320 24.7
AUR62032962 Chenopodium quinoa HOM05D001907 ORTHO05D002387 6.6e-06 55.8 190 27.4
HanXRQChr16g0512681 Helianthus annuus HOM05D001907 ORTHO05D002387 6.6e-06 55.8 268 25.7
Nitab4.5_0005372g0030 Nicotiana tabacum HOM05D001907 ORTHO05D002387 6.6e-06 55.8 294 22.8
PSO170G4236 Papaver somniferum HOM05D001907 ORTHO05D002387 8.6e-06 55.5 338 23.7


User provided reference genes

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