Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA232G1465 Erigeron canadensis HOM05D005356 ORTHO05D006596 6.9e-262 906.7 451 100.0
Lsat_1_v5_gn_9_47941 Lactuca sativa HOM05D005356 ORTHO05D006596 1.4e-185 653.3 409 82.9
HanXRQChr05g0139001 Helianthus annuus HOM05D005356 ORTHO05D006596 1.7e-172 609.8 402 79.6
Dinv17238 Davidia involucrata HOM05D005356 ORTHO05D006596 9.9e-144 514.2 346 72.3
Nitab4.5_0002990g0020 Nicotiana tabacum HOM05D005356 ORTHO05D006596 1.9e-142 510.0 345 70.1
Nitab4.5_0000299g0040 Nicotiana tabacum HOM05D005356 ORTHO05D006596 7.1e-142 508.1 345 70.4
TAR375G1012 Trochodendron aralioides HOM05D005356 ORTHO05D006596 7.9e-141 504.6 409 64.1
Solyc04g064720.3 Solanum lycopersicum HOM05D005356 ORTHO05D006596 2.3e-140 503.1 345 69.6
Sopen04g026680 Solanum pennellii HOM05D005356 ORTHO05D006596 2.3e-140 503.1 345 69.6
Thecc.05G227000 Theobroma cacao HOM05D005356 ORTHO05D006596 2.3e-140 503.1 350 70.0
PGSC0003DMG400024812 Solanum tuberosum HOM05D005356 ORTHO05D006596 3.0e-140 502.7 345 69.6
TAR629G3426 Trochodendron aralioides HOM05D005356 ORTHO05D006596 5.1e-140 501.9 412 63.3
CAN.G2009.1 Capsicum annuum HOM05D005356 ORTHO05D006596 1.5e-139 500.4 344 69.5
Peaxi162Scf00263g00323 Petunia axillaris HOM05D005356 ORTHO05D006596 2.5e-139 499.6 345 69.0
CiPaw.05G210900 Carya illinoinensis HOM05D005356 ORTHO05D006596 1.3e-138 497.3 356 66.9
Cc10_g12920 Coffea canephora HOM05D005356 ORTHO05D006596 8.2e-138 494.6 416 60.6
Prupe.2G329800 Prunus persica HOM05D005356 ORTHO05D006596 5.3e-137 491.9 384 64.8
Manes.08G159200 Manihot esculenta HOM05D005356 ORTHO05D006596 1.2e-136 490.7 369 66.1
Hma1.2p1_0564F.1_g179310 Hydrangea macrophylla HOM05D005356 ORTHO05D006596 4.5e-136 488.8 412 62.6
RcHm_v2.0_Chr1g0384641 Rosa chinensis HOM05D005356 ORTHO05D006596 5.8e-136 488.4 361 66.2
GSVIVG01024263001 Vitis vinifera HOM05D005356 ORTHO05D006596 5.8e-136 488.4 378 64.0
Hma1.2p1_0419F.1_g149580 Hydrangea macrophylla HOM05D005356 ORTHO05D006596 4.9e-135 485.3 371 66.3
Atru.chr12.1818 Acer truncatum HOM05D005356 ORTHO05D006596 1.4e-134 483.8 343 69.1
Medtr0172s0020 Medicago truncatula HOM05D005356 ORTHO05D006596 1.4e-134 483.8 380 65.8
FvH4_7g34281 Fragaria vesca HOM05D005356 ORTHO05D006596 3.2e-134 482.6 371 64.4
Gorai.007G246900 Gossypium raimondii HOM05D005356 ORTHO05D006596 5.5e-134 481.9 345 68.1
Gohir.D11G234600 Gossypium hirsutum HOM05D005356 ORTHO05D006596 9.3e-134 481.1 345 67.8
Nn3g19190 Nelumbo nucifera HOM05D005356 ORTHO05D006596 9.3e-134 481.1 409 59.7
Gohir.A11G226000 Gossypium hirsutum HOM05D005356 ORTHO05D006596 1.6e-133 480.3 337 68.8
Nn1g09227 Nelumbo nucifera HOM05D005356 ORTHO05D006596 1.6e-133 480.3 344 69.2
Oeu030531.2 Olea europaea HOM05D005356 ORTHO05D006596 2.1e-133 479.9 347 67.7
Ciclev10031697m.g Citrus clementina HOM05D005356 ORTHO05D006596 2.7e-133 479.6 345 68.7
COL.COLO4_32921 Corchorus olitorius HOM05D005356 ORTHO05D006596 2.7e-133 479.6 345 68.1
Potri.013G076100 Populus trichocarpa HOM05D005356 ORTHO05D006596 2.7e-133 479.6 376 64.9
ATR0369G003 Amborella trichopoda HOM05D005356 ORTHO05D006596 4.6e-133 478.8 394 61.9
Gorai.004G255200 Gossypium raimondii HOM05D005356 ORTHO05D006596 1.0e-132 477.6 370 63.5
Os04g0602400 Oryza sativa ssp. japonica HOM05D005356 ORTHO05D006596 1.3e-132 477.2 315 74.0
CiPaw.06G037000 Carya illinoinensis HOM05D005356 ORTHO05D006596 1.8e-132 476.9 358 64.2
DCAR_009031 Daucus carota HOM05D005356 ORTHO05D006596 1.8e-132 476.9 345 68.7
Hund11857 Selenicereus undatus HOM05D005356 ORTHO05D006596 1.8e-132 476.9 397 62.0
Aqoxy3G04210 Aquilegia oxysepala HOM05D005356 ORTHO05D006596 3.9e-132 475.7 408 60.0
MD07G1311300 Malus domestica HOM05D005356 ORTHO05D006596 3.9e-132 475.7 336 68.5
Sabra13G0065300 Salix brachista HOM05D005356 ORTHO05D006596 5.1e-132 475.3 376 64.9
arahy.Tifrunner.gnm1.ann1.509DQ1 Arachis hypogaea HOM05D005356 ORTHO05D006596 6.7e-132 474.9 370 65.9
Aqoxy1G01762 Aquilegia oxysepala HOM05D005356 ORTHO05D006596 1.5e-131 473.8 405 60.0
A02p04240 Brassica napus HOM05D005356 ORTHO05D006596 1.5e-131 473.8 378 63.8
BraA02t05387Z Brassica rapa HOM05D005356 ORTHO05D006596 1.5e-131 473.8 378 63.8
THA.LOC104820830 Tarenaya hassleriana HOM05D005356 ORTHO05D006596 9.7e-131 471.1 358 62.8
BcaC03g13524 Brassica carinata HOM05D005356 ORTHO05D006596 1.6e-130 470.3 360 65.0
Gohir.A08G221634 Gossypium hirsutum HOM05D005356 ORTHO05D006596 2.2e-130 469.9 383 61.4
Lj3g0010653 Lotus japonicus HOM05D005356 ORTHO05D006596 2.2e-130 469.9 384 63.3
arahy.Tifrunner.gnm1.ann1.RW14FX Arachis hypogaea HOM05D005356 ORTHO05D006596 2.8e-130 469.5 345 68.7
AUR62015463 Chenopodium quinoa HOM05D005356 ORTHO05D006596 1.1e-129 467.6 432 57.9
AUR62002252 Chenopodium quinoa HOM05D005356 ORTHO05D006596 2.4e-129 466.5 415 59.0
PSO782G1515 Papaver somniferum HOM05D005356 ORTHO05D006596 2.4e-129 466.5 417 59.0
C02p09120 Brassica napus HOM05D005356 ORTHO05D006596 3.1e-129 466.1 360 64.2
TPR.G9827 Trifolium pratense HOM05D005356 ORTHO05D006596 3.1e-129 466.1 405 62.0
BolC2t06824H Brassica oleracea HOM05D005356 ORTHO05D006596 9.0e-129 464.5 360 64.4
PGR119G0933 Punica granatum HOM05D005356 ORTHO05D006596 2.0e-128 463.4 316 70.3
Sed0019262 Sechium edule HOM05D005356 ORTHO05D006596 2.6e-128 463.0 345 64.6
PGR008G0003 Punica granatum HOM05D005356 ORTHO05D006596 5.9e-128 461.8 316 69.9
PGR131G0008 Punica granatum HOM05D005356 ORTHO05D006596 5.9e-128 461.8 316 69.9
EL10Ac3g05893 Beta vulgaris HOM05D005356 ORTHO05D006596 7.7e-128 461.5 389 60.9
MELO3C024754.2 Cucumis melo HOM05D005356 ORTHO05D006596 1.7e-127 460.3 410 58.0
CANSAT21G1742 Cannabis sativa HOM05D005356 ORTHO05D006596 3.8e-127 459.1 341 66.6
CsaV3_2G035860 Cucumis sativus L. HOM05D005356 ORTHO05D006596 5.0e-127 458.8 412 57.3
Sabra19G0053800 Salix brachista HOM05D005356 ORTHO05D006596 6.5e-127 458.4 364 63.5
Sp6g26700 Schrenkiella parvula HOM05D005356 ORTHO05D006596 6.5e-127 458.4 358 62.8
Migut.N03237 Erythranthe guttata HOM05D005356 ORTHO05D006596 1.9e-126 456.8 410 57.8
Lalb_Chr01g0000721 Lupinus albus HOM05D005356 ORTHO05D006596 1.9e-126 456.8 383 62.1
Psat0s2502g0200 Pisum sativum HOM05D005356 ORTHO05D006596 1.9e-126 456.8 380 61.1
Migut.C01041 Erythranthe guttata HOM05D005356 ORTHO05D006596 3.2e-126 456.1 402 57.0
Glyma.12G013400 Glycine max HOM05D005356 ORTHO05D006596 4.2e-126 455.7 376 62.2
Phvul.011G016500 Phaseolus vulgaris HOM05D005356 ORTHO05D006596 4.2e-126 455.7 385 60.0
BcaB08g36764 Brassica carinata HOM05D005356 ORTHO05D006596 9.4e-126 454.5 315 68.6
Sed0017544 Sechium edule HOM05D005356 ORTHO05D006596 1.2e-125 454.1 343 64.7
Aa31LG11G12150 Aethionema arabicum HOM05D005356 ORTHO05D006596 2.7e-125 453.0 311 68.5
A10p21870 Brassica napus HOM05D005356 ORTHO05D006596 2.7e-125 453.0 315 68.3
BraA10t44246Z Brassica rapa HOM05D005356 ORTHO05D006596 2.7e-125 453.0 315 68.3
Eucgr.A02993 Eucalyptus grandis HOM05D005356 ORTHO05D006596 7.9e-125 451.4 341 66.0
SalBow7G2700 Salvia bowleyana HOM05D005356 ORTHO05D006596 7.9e-125 451.4 341 64.5
CARHR195670 Cardamine hirsuta HOM05D005356 ORTHO05D006596 1.0e-124 451.1 341 63.6
THA.LOC104802905 Tarenaya hassleriana HOM05D005356 ORTHO05D006596 1.4e-124 450.7 358 62.6
BcaC04g18781 Brassica carinata HOM05D005356 ORTHO05D006596 3.0e-124 449.5 315 67.6
MSTRG.24194 Avicennia marina HOM05D005356 ORTHO05D006596 6.7e-124 448.4 343 63.8
AT5G17520 Arabidopsis thaliana HOM05D005356 ORTHO05D006596 1.1e-123 447.6 335 65.4
AL6G28610 Arabidopsis lyrata HOM05D005356 ORTHO05D006596 4.3e-123 445.7 345 63.8
C09p59620 Brassica napus HOM05D005356 ORTHO05D006596 9.7e-123 444.5 315 67.0
BolC9t58801H Brassica oleracea HOM05D005356 ORTHO05D006596 9.7e-123 444.5 315 67.0
Oeu015013.2 Olea europaea HOM05D005356 ORTHO05D006596 1.3e-122 444.1 468 52.4
VMungo0647G2360 Vigna mungo HOM05D005356 ORTHO05D006596 6.9e-121 438.3 304 68.4
SalBow6G3313 Salvia bowleyana HOM05D005356 ORTHO05D006596 1.2e-120 437.6 413 56.2
FAN03G1362 Fragaria x ananassa HOM05D005356 ORTHO05D006596 1.6e-117 427.2 289 70.2
SEGI_37553 Sequoiadendron giganteum HOM05D005356 ORTHO05D006596 1.0e-116 424.5 354 60.7
Actinidia33804 Actinidia chinensis HOM05D005356 ORTHO05D006596 1.4e-116 424.1 411 57.4
A10p21860 Brassica napus HOM05D005356 ORTHO05D006596 6.7e-116 421.8 293 68.6
MD01G1240200 Malus domestica HOM05D005356 ORTHO05D006596 6.7e-116 421.8 336 63.1
MSTRG.22381 Avicennia marina HOM05D005356 ORTHO05D006596 1.1e-115 421.0 346 59.5
unitig_744.g24563 Utricularia gibba HOM05D005356 ORTHO05D006596 3.7e-114 416.0 331 62.5
SGA_v2.0_scaffold19G08642 Striga asiatica HOM05D005356 ORTHO05D006596 4.8e-114 415.6 332 62.3
PSO063G2098 Papaver somniferum HOM05D005356 ORTHO05D006596 2.4e-113 413.3 313 66.5
Lj3A883T53 Lonicera japonica HOM05D005356 ORTHO05D006596 5.3e-113 412.1 281 73.3
Rhsim09G0214300 Rhododendron simsii HOM05D005356 ORTHO05D006596 1.7e-111 407.1 623 41.4
Manes.09G130400 Manihot esculenta HOM05D005356 ORTHO05D006596 8.5e-111 404.8 367 56.9
Duzib177G1190 Durio zibethinus HOM05D005356 ORTHO05D006596 5.5e-110 402.1 280 70.4
Cpa.g.sc43.152 Carica papaya HOM05D005356 ORTHO05D006596 1.1e-105 387.9 278 68.3
Ca_19620_v3 Cicer arietinum L. HOM05D005356 ORTHO05D006596 7.0e-105 385.2 263 71.1
Gohir.D08G239900 Gossypium hirsutum HOM05D005356 ORTHO05D006596 9.4e-102 374.8 265 67.5
Haze_00348 Corylus avellana HOM05D005356 ORTHO05D006596 5.2e-100 369.0 355 56.3
Mapoly0051s0014 Marchantia polymorpha HOM05D005356 ORTHO05D006596 3.7e-98 362.8 308 56.2
Carub.0006s1575 Capsella rubella HOM05D005356 ORTHO05D006596 1.0e-95 354.8 258 65.5
ClCG02G007870 Citrullus lanatus HOM05D005356 ORTHO05D006596 3.8e-95 352.8 295 59.7
Pp3c6_18710 Physcomitrium patens HOM05D005356 ORTHO05D006596 2.5e-94 350.1 342 51.2
CDE11G1065 Ceratophyllum demersum HOM05D005356 ORTHO05D006596 3.2e-94 349.7 367 52.0
AagrBONN_evm.TU.Sc2ySwM_228.477 Anthoceros agrestis HOM05D005356 ORTHO05D006596 1.2e-93 347.8 323 53.9
SMO012G0030 Selaginella moellendorffii HOM05D005356 ORTHO05D006596 3.4e-91 339.7 388 47.2
MBI04_g30781_MAGBIO Magnolia biondii HOM05D005356 ORTHO05D006596 2.2e-90 337.0 265 66.8
Pp3c24_890 Physcomitrium patens HOM05D005356 ORTHO05D006596 8.6e-87 325.1 309 52.4
HPP92_022764 Vanilla planifolia HOM05D005356 ORTHO05D006596 1.9e-86 323.9 218 66.5
Sopen04g026690 Solanum pennellii HOM05D005356 ORTHO05D006596 2.5e-86 323.6 295 58.3
SMO118G0252 Selaginella moellendorffii HOM05D005356 ORTHO05D006596 9.2e-81 305.1 287 54.4
CANSAT21G0168 Cannabis sativa HOM05D005356 ORTHO05D006596 2.5e-78 297.0 213 67.6
vmacro22188 Vaccinium macrocarpon HOM05D005356 ORTHO05D006596 5.6e-78 295.8 308 54.5
CSS0033101 Camellia sinensis var. sinensis HOM05D005356 ORTHO05D006596 2.9e-74 283.5 263 61.2
Sc03g0005650 Simmondsia chinensis HOM05D005356 ORTHO05D006596 1.5e-70 271.2 205 69.3
Zm00001eb071770 Zea mays HOM05D005356 ORTHO05D006596 2.5e-70 270.4 183 75.4
CANSAT21G1370 Cannabis sativa HOM05D005356 ORTHO05D006596 7.0e-65 252.3 168 70.2
Pp3c23_14070 Physcomitrium patens HOM05D005356 ORTHO05D006596 5.2e-60 236.1 238 50.4
Actinidia04557 Actinidia chinensis HOM05D005356 ORTHO05D006596 1.3e-50 204.9 224 50.4
MCO10G093 Micromonas commoda HOM05D005356 ORTHO05D006596 5.1e-47 193.0 330 35.5
AT5G17523 Arabidopsis thaliana HOM05D005356 ORTHO05D006596 3.8e-42 176.8 147 64.6
Thhalv10016106m.g Eutrema salsugineum HOM05D005356 ORTHO05D006596 5.4e-41 172.9 114 64.9
Cre12.g486600 Chlamydomonas reinhardtii HOM05D005356 ORTHO05D006596 3.0e-39 167.2 314 32.5
Pp3c24_840 Physcomitrium patens HOM05D005356 ORTHO05D006596 1.4e-33 148.3 146 51.4
Glyma.09G223400 Glycine max HOM05D005356 ORTHO05D006596 4.2e-33 146.7 93 67.7
PRCOL_00004977 Prasinoderma coloniale HOM05D005356 ORTHO05D006596 4.8e-29 133.3 309 31.1
CSS0037967 Camellia sinensis var. sinensis HOM05D005356 ORTHO05D006596 2.4e-28 131.0 103 61.2
CBR_g17686 Chara braunii HOM05D005356 ORTHO05D006596 8.4e-26 122.5 104 51.0
Zm00001eb003380 Zea mays HOM05D001522 ORTHO05D001547 1.7e-18 98.2 81 66.7
CBR_g17688 Chara braunii HOM05D005356 ORTHO05D006596 3.0e-15 87.4 103 42.7
Pp3c21_10850 Physcomitrium patens HOM05D005356 ORTHO05D310352 6.7e-15 86.3 183 30.1
HPP92_022763 Vanilla planifolia HOM05D005356 ORTHO05D006596 1.9e-14 84.7 47 83.0


User provided reference genes

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