Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA232G1195 Erigeron canadensis HOM05D005198 ORTHO05D006839 7.1e-295 1016.5 518 100.0
HanXRQChr15g0483441 Helianthus annuus HOM05D005198 ORTHO05D006839 5.2e-229 797.7 465 87.3
Lsat_1_v5_gn_9_61481 Lactuca sativa HOM05D005198 ORTHO05D006839 1.1e-223 780.0 506 79.1
PGR142G0872 Punica granatum HOM05D005198 ORTHO05D006839 7.0e-218 760.8 524 72.7
Rhsim04G0106800 Rhododendron simsii HOM05D005198 ORTHO05D006839 2.5e-215 752.3 517 69.6
Actinidia28982 Actinidia chinensis HOM05D005198 ORTHO05D006839 9.5e-215 750.4 520 71.2
Cc03_g14040 Coffea canephora HOM05D005198 ORTHO05D006839 1.0e-213 746.9 511 73.2
Thecc.01G302200 Theobroma cacao HOM05D005198 ORTHO05D006839 1.8e-213 746.1 497 72.8
MD15G1424000 Malus domestica HOM05D005198 ORTHO05D006839 2.6e-212 742.3 519 69.7
QL10p055731 Quercus lobata HOM05D005198 ORTHO05D006839 1.7e-211 739.6 485 72.4
Potri.013G126300 Populus trichocarpa HOM05D005198 ORTHO05D006839 8.3e-211 737.3 518 70.1
Hma1.2p1_0150F.1_g066860 Hydrangea macrophylla HOM05D005198 ORTHO05D006839 1.8e-210 736.1 512 69.7
TAR365G0102 Trochodendron aralioides HOM05D005198 ORTHO05D006839 1.8e-210 736.1 521 70.1
Eucgr.H00311 Eucalyptus grandis HOM05D005198 ORTHO05D006839 3.2e-210 735.3 518 71.2
Ciclev10019752m.g Citrus clementina HOM05D005198 ORTHO05D006839 2.7e-209 732.3 497 70.4
Manes.04G036150 Manihot esculenta HOM05D005198 ORTHO05D006839 2.7e-209 732.3 497 71.0
Prupe.1G207000 Prunus persica HOM05D005198 ORTHO05D006839 2.7e-209 732.3 517 71.4
MELO3C017760.2 Cucumis melo HOM05D005198 ORTHO05D006839 7.8e-209 730.7 521 70.8
Solyc08g014060.4 Solanum lycopersicum HOM05D005198 ORTHO05D006839 1.3e-208 729.9 525 69.1
Sabra13G0105600 Salix brachista HOM05D005198 ORTHO05D006839 3.9e-208 728.4 517 69.1
ClCG07G015220 Citrullus lanatus HOM05D005198 ORTHO05D006839 3.3e-207 725.3 521 70.8
SalBow3G0226 Salvia bowleyana HOM05D005198 ORTHO05D006839 1.6e-206 723.0 498 70.3
Sopen08g004940 Solanum pennellii HOM05D005198 ORTHO05D006839 1.6e-206 723.0 529 67.9
TWI63G1273 Tripterygium wilfordii HOM05D005198 ORTHO05D006839 1.6e-206 723.0 515 68.3
GSVIVG01038139001 Vitis vinifera HOM05D005198 ORTHO05D006839 1.6e-206 723.0 493 70.4
CAN.G1411.3 Capsicum annuum HOM05D005198 ORTHO05D006839 1.0e-205 720.3 518 70.1
Sed0009334 Sechium edule HOM05D005198 ORTHO05D006839 1.0e-205 720.3 521 69.9
Gohir.A02G009975 Gossypium hirsutum HOM05D005198 ORTHO05D006839 1.8e-205 719.5 499 70.5
RcHm_v2.0_Chr2g0123631 Rosa chinensis HOM05D005198 ORTHO05D006839 1.2e-204 716.8 518 69.1
Lj4A14T50 Lonicera japonica HOM05D005198 ORTHO05D006839 1.5e-204 716.5 445 75.5
Glyma.07G208200 Glycine max HOM05D005198 ORTHO05D006839 2.0e-204 716.1 519 67.6
Aqoxy2G02750 Aquilegia oxysepala HOM05D005198 ORTHO05D006839 5.8e-204 714.5 518 67.4
VMungo0251G3269 Vigna mungo HOM05D005198 ORTHO05D006839 9.8e-204 713.8 499 69.1
Duzib151G0783 Durio zibethinus HOM05D005198 ORTHO05D006839 2.9e-203 712.2 515 69.1
CARHR066180 Cardamine hirsuta HOM05D005198 ORTHO05D006839 8.3e-203 710.7 492 69.1
Oeu020813.1 Olea europaea HOM05D005198 ORTHO05D006839 8.3e-203 710.7 483 71.0
Phvul.003G296400 Phaseolus vulgaris HOM05D005198 ORTHO05D006839 1.1e-202 710.3 498 69.3
Gorai.005G012500 Gossypium raimondii HOM05D005198 ORTHO05D006839 1.4e-202 709.9 499 69.9
Ah.13g073540 Amaranthus hybridus HOM05D005198 ORTHO05D006839 4.1e-202 708.4 517 67.3
Gohir.D02G010200 Gossypium hirsutum HOM05D005198 ORTHO05D006839 4.1e-202 708.4 499 69.5
Haze_01365 Corylus avellana HOM05D005198 ORTHO05D006839 7.0e-202 707.6 554 65.3
Glyma.02G137200 Glycine max HOM05D005198 ORTHO05D006839 1.2e-201 706.8 496 69.2
Lj1g0021010 Lotus japonicus HOM05D005198 ORTHO05D006839 1.2e-201 706.8 499 67.9
Medtr4g087280 Medicago truncatula HOM05D005198 ORTHO05D006839 2.7e-201 705.7 517 68.1
THA.LOC104813938 Tarenaya hassleriana HOM05D005198 ORTHO05D006839 7.8e-201 704.1 516 68.6
AUR62002390 Chenopodium quinoa HOM05D005198 ORTHO05D006839 6.6e-200 701.0 515 66.2
CsaV3_4G002810 Cucumis sativus L. HOM05D005198 ORTHO05D006839 6.6e-200 701.0 536 68.1
arahy.Tifrunner.gnm1.ann1.A4X0ZB Arachis hypogaea HOM05D005198 ORTHO05D006839 1.1e-199 700.3 520 67.1
Lalb_Chr09g0328121 Lupinus albus HOM05D005198 ORTHO05D006839 1.1e-199 700.3 484 69.2
TPR.G23517 Trifolium pratense HOM05D005198 ORTHO05D006839 2.5e-199 699.1 483 67.9
PSO675G4502 Papaver somniferum HOM05D005198 ORTHO05D006839 3.3e-199 698.7 518 64.7
Migut.G01222 Erythranthe guttata HOM05D005198 ORTHO05D006839 4.3e-199 698.4 481 69.0
PSO732G0749 Papaver somniferum HOM05D005198 ORTHO05D006839 7.3e-199 697.6 518 64.7
Aa31LG4G3470 Aethionema arabicum HOM05D005198 ORTHO05D006839 2.8e-198 695.7 510 68.4
AT1G73180 Arabidopsis thaliana HOM05D005198 ORTHO05D006839 3.6e-198 695.3 492 68.3
Sp5g28150 Schrenkiella parvula HOM05D005198 ORTHO05D006839 3.6e-198 695.3 492 68.3
Thhalv10018413m.g Eutrema salsugineum HOM05D005198 ORTHO05D006839 6.2e-198 694.5 492 68.1
arahy.Tifrunner.gnm1.ann1.Q28JUU Arachis hypogaea HOM05D005198 ORTHO05D006839 1.1e-197 693.7 530 65.1
Dinv07059 Davidia involucrata HOM05D005198 ORTHO05D006839 1.1e-197 693.7 483 69.8
Psat7g121400 Pisum sativum HOM05D005198 ORTHO05D006839 1.1e-197 693.7 517 67.5
CANSAT11G2028 Cannabis sativa HOM05D005198 ORTHO05D006839 2.3e-197 692.6 515 66.4
Carub.0002s1997 Capsella rubella HOM05D005198 ORTHO05D006839 3.1e-197 692.2 493 67.7
AL2G32950 Arabidopsis lyrata HOM05D005198 ORTHO05D006839 1.5e-196 689.9 493 67.5
FAN28G0627 Fragaria x ananassa HOM05D005198 ORTHO05D006839 7.5e-196 687.6 509 67.2
C06p34190 Brassica napus HOM05D005198 ORTHO05D006839 1.9e-194 682.9 493 67.5
A07p29920 Brassica napus HOM05D005198 ORTHO05D006839 6.6e-192 674.5 494 67.2
COL.COLO4_23329 Corchorus olitorius HOM05D005198 ORTHO05D006839 8.1e-190 667.5 496 66.3
FAN26G1320 Fragaria x ananassa HOM05D005198 ORTHO05D006839 1.1e-189 667.2 574 60.8
BraA07t30630Z Brassica rapa HOM05D005198 ORTHO05D006839 6.8e-189 664.5 500 65.8
vmacro09048 Vaccinium macrocarpon HOM05D005198 ORTHO05D006839 3.4e-188 662.1 716 51.4
Atru.BG.83.p Acer truncatum HOM05D005198 ORTHO05D006839 2.7e-185 652.5 475 67.4
Hund03196 Selenicereus undatus HOM05D005198 ORTHO05D006839 2.7e-185 652.5 520 63.3
BolC6t38540H Brassica oleracea HOM05D005198 ORTHO05D006839 6.0e-185 651.4 500 64.6
AUR62023798 Chenopodium quinoa HOM05D005198 ORTHO05D006839 7.3e-183 644.4 534 63.5
Cpa.g.sc9.361 Carica papaya HOM05D005198 ORTHO05D006839 9.6e-183 644.0 515 64.3
ATR0733G245 Amborella trichopoda HOM05D005198 ORTHO05D006839 1.5e-180 636.7 486 62.6
Nitab4.5_0011921g0010 Nicotiana tabacum HOM05D005198 ORTHO05D006839 2.6e-180 636.0 486 64.8
Zm00001eb246620 Zea mays HOM05D005198 ORTHO05D006839 4.4e-180 635.2 522 59.0
SGA_v2.0_scaffold12G06184 Striga asiatica HOM05D005198 ORTHO05D006839 1.3e-179 633.6 515 65.2
Peaxi162Scf00075g01544 Petunia axillaris HOM05D005198 ORTHO05D006839 1.4e-178 630.2 488 64.3
CSS0046337 Camellia sinensis var. sinensis HOM05D005198 ORTHO05D006839 8.7e-176 620.9 515 64.1
BcaC08g45664 Brassica carinata HOM05D005198 ORTHO05D006839 5.3e-173 611.7 497 63.0
FvH4_1g25500 Fragaria vesca HOM05D005198 ORTHO05D006839 9.0e-173 610.9 509 63.1
Nitab4.5_0000122g0140 Nicotiana tabacum HOM05D005198 ORTHO05D006839 7.6e-172 607.8 431 68.2
Eucgr.L01724 Eucalyptus grandis HOM05D005198 ORTHO05D006839 1.3e-168 597.0 471 66.7
CDE04G2667 Ceratophyllum demersum HOM05D005198 ORTHO05D006839 8.7e-168 594.3 507 59.6
Hma1.2p1_0150F.1_g066870 Hydrangea macrophylla HOM05D005198 ORTHO05D006839 1.5e-167 593.6 381 70.9
FAN23G1744 Fragaria x ananassa HOM05D005198 ORTHO05D006839 2.5e-167 592.8 513 60.0
FAN19G2119 Fragaria x ananassa HOM05D005198 ORTHO05D006839 3.1e-165 585.9 549 58.3
CiPaw.02G100600 Carya illinoinensis HOM05D005198 ORTHO05D006839 2.9e-163 579.3 393 74.6
Dinv33201 Davidia involucrata HOM05D005198 ORTHO05D006839 4.2e-162 575.5 392 73.5
Nn1g09646 Nelumbo nucifera HOM05D005198 ORTHO05D006839 1.0e-152 544.3 367 71.7
Sc25g0002780 Simmondsia chinensis HOM05D005198 ORTHO05D006839 2.9e-147 526.2 345 69.3
Mapoly0011s0080 Marchantia polymorpha HOM05D005198 ORTHO05D006839 8.2e-142 508.1 477 53.0
Lalb_Chr16g0384461 Lupinus albus HOM05D005198 ORTHO05D006839 1.1e-138 497.7 345 68.4
Pp3c6_14240 Physcomitrium patens HOM05D005198 ORTHO05D006839 2.5e-138 496.5 496 49.2
unitig_92.g28215 Utricularia gibba HOM05D005198 ORTHO05D006839 1.4e-133 480.7 314 70.1
CSS0050366 Camellia sinensis var. sinensis HOM05D005198 ORTHO05D006839 7.7e-132 474.9 388 61.3
CBR_g53754 Chara braunii HOM05D005198 ORTHO05D006839 2.8e-126 456.4 521 44.9
SMO145G0177 Selaginella moellendorffii HOM05D005198 ORTHO05D006839 5.0e-123 445.7 489 46.6
SEGI_32957 Sequoiadendron giganteum HOM05D005198 ORTHO05D006839 2.2e-118 430.3 383 57.4
Ca_25383_v3 Cicer arietinum L. HOM05D005198 ORTHO05D006839 5.3e-117 425.6 257 74.7
MBI11_g23940_MAGBIO Magnolia biondii HOM05D005198 ORTHO05D006839 1.6e-116 424.1 289 67.8
DCAR_027527 Daucus carota HOM05D005198 ORTHO05D006839 5.0e-115 419.1 289 67.8
EL10Ac3g06083 Beta vulgaris HOM05D005198 ORTHO05D006839 9.4e-114 414.8 295 66.1
Atru.chr4.1402 Acer truncatum HOM05D005198 ORTHO05D006839 6.3e-110 402.1 261 70.9
Eucgr.H00310 Eucalyptus grandis HOM05D005198 ORTHO05D006839 2.0e-108 397.1 469 49.3
SHI30329 Sapria himalayana HOM05D005198 ORTHO05D000023 1.1e-93 348.2 303 59.1
AagrBONN_evm.TU.Sc2ySwM_228.1363 Anthoceros agrestis HOM05D005198 ORTHO05D006839 2.9e-78 297.0 290 50.7
PRCOL_00000684 Prasinoderma coloniale HOM05D005198 ORTHO05D006839 1.2e-76 291.6 442 36.9
Hma1.2p1_0554F.1_g177930 Hydrangea macrophylla HOM05D005198 ORTHO05D006839 2.1e-76 290.8 328 52.1
MCO01G167 Micromonas commoda HOM05D005198 ORTHO05D006839 2.5e-74 283.9 496 33.9
Lj3g0007177 Lotus japonicus HOM05D005198 ORTHO05D006839 1.3e-70 271.6 203 67.5
Lj6g0012253 Lotus japonicus HOM05D005198 ORTHO05D006839 1.3e-70 271.6 203 67.5
Cre08.g375900 Chlamydomonas reinhardtii HOM05D005198 ORTHO05D006839 3.8e-70 270.0 462 35.3
CAN.G256.23 Capsicum annuum HOM05D005198 ORTHO05D006839 1.2e-52 211.8 152 63.8
DCAR_027526 Daucus carota HOM05D005198 ORTHO05D006839 8.7e-51 205.7 181 69.1
Ca_18641_v3 Cicer arietinum L. HOM05D005198 ORTHO05D006839 3.1e-48 197.2 478 31.2
Lalb_Chr16g0384471 Lupinus albus HOM05D005198 ORTHO05D006839 1.5e-47 194.9 142 69.0
unitig_92.g28214 Utricularia gibba HOM05D005198 ORTHO05D006839 1.6e-44 184.9 154 63.6
SHI30330 Sapria himalayana HOM05D000105 ORTHO05D000023 1.5e-42 178.3 196 46.9
MBI11_g23941_MAGBIO Magnolia biondii HOM05D005198 ORTHO05D006839 3.7e-41 173.7 150 61.3
Nitab4.5_0009616g0020 Nicotiana tabacum HOM05D005198 ORTHO05D006839 1.2e-39 168.7 100 76.0
SEGI_27162 Sequoiadendron giganteum HOM05D005198 ORTHO05D006839 2.1e-28 131.3 127 49.6
CSS0015120 Camellia sinensis var. sinensis HOM05D005198 ORTHO05D006839 1.8e-27 128.3 130 67.7
BolC3t18675H Brassica oleracea HOM05D005198 ORTHO05D006839 2.3e-27 127.9 101 58.4
TPR.G21430 Trifolium pratense HOM05D002708 ORTHO05D003516 9.7e-26 122.5 422 23.5
MBI14_g40932_MAGBIO Magnolia biondii HOM05D005198 ORTHO05D006839 1.3e-25 122.1 80 66.2
RcHm_v2.0_Chr3g0448281 Rosa chinensis HOM05D002708 ORTHO05D003516 6.9e-24 116.3 373 23.3
PSO063G5514 Papaver somniferum HOM05D002708 ORTHO05D003516 1.3e-22 112.1 439 22.1
CDE12G0538 Ceratophyllum demersum HOM05D002708 ORTHO05D003516 1.7e-22 111.7 441 22.2
PSO782G1674 Papaver somniferum HOM05D002708 ORTHO05D003516 1.7e-22 111.7 439 21.9
PSO017G2439 Papaver somniferum HOM05D002708 ORTHO05D003516 2.2e-22 111.3 439 21.9
PGR031G2892 Punica granatum HOM05D002708 ORTHO05D003516 2.9e-22 110.9 419 21.2
ECA248G3827 Erigeron canadensis HOM05D002708 ORTHO05D003516 5.0e-22 110.2 416 21.6
Medtr3g105430 Medicago truncatula HOM05D002708 ORTHO05D003516 5.0e-22 110.2 423 21.5
Aqoxy7G03410 Aquilegia oxysepala HOM05D002708 ORTHO05D003516 6.5e-22 109.8 458 22.1
Manes.03G006600 Manihot esculenta HOM05D002708 ORTHO05D003516 8.5e-22 109.4 419 21.0
Manes.16G132500 Manihot esculenta HOM05D002708 ORTHO05D003516 1.1e-21 109.0 396 21.5
Medtr5g091610 Medicago truncatula HOM05D001363 ORTHO05D006839 2.5e-21 107.8 79 63.3
Peaxi162Scf01124g00013 Petunia axillaris HOM05D002708 ORTHO05D003516 5.5e-21 106.7 406 20.9
Sabra06G0209700 Salix brachista HOM05D002708 ORTHO05D003516 2.1e-20 104.8 419 20.8
Zm00001eb024200 Zea mays HOM05D002708 ORTHO05D003516 4.7e-20 103.6 373 22.8
EL10Ac5g11414 Beta vulgaris HOM05D002708 ORTHO05D003516 6.1e-20 103.2 417 21.1
CSS0029201 Camellia sinensis var. sinensis HOM05D002708 ORTHO05D003516 1.0e-19 102.4 437 22.0
CDE01G0349 Ceratophyllum demersum HOM05D002708 ORTHO05D003516 5.1e-19 100.1 442 21.7
AagrBONN_evm.TU.Sc2ySwM_117.472 Anthoceros agrestis HOM05D002708 ORTHO05D003516 2.0e-18 98.2 415 20.5
Cre03.g190100 Chlamydomonas reinhardtii HOM05D002708 ORTHO05D003516 2.0e-18 98.2 416 22.4
MBI11_g30564_MAGBIO Magnolia biondii HOM05D005198 ORTHO05D006839 2.6e-18 97.8 57 75.4
MCO03G077 Micromonas commoda HOM05D002708 ORTHO05D003516 3.3e-18 97.4 365 24.1
TPR.G40117 Trifolium pratense HOM05D002708 ORTHO05D003516 3.3e-18 97.4 214 27.6
Lsat_1_v5_gn_8_82921 Lactuca sativa HOM05D002708 ORTHO05D003516 5.7e-18 96.7 394 21.3
Psat1g217120 Pisum sativum HOM05D005198 ORTHO05D006839 9.7e-18 95.9 66 68.2
MD04G1241100 Malus domestica HOM05D002708 ORTHO05D003516 2.2e-17 94.7 426 20.2
Glyma.03G132500 Glycine max HOM05D005198 ORTHO05D006839 2.8e-17 94.4 74 63.5
SGA_v2.0_scaffold130G34334 Striga asiatica HOM05D005198 ORTHO05D006839 6.3e-17 93.2 90 53.3
Sabra18G0018700 Salix brachista HOM05D002708 ORTHO05D003516 8.2e-17 92.8 438 20.3
Potri.018G015200 Populus trichocarpa HOM05D002708 ORTHO05D003516 1.1e-16 92.4 450 19.6
SEGI_02227 Sequoiadendron giganteum HOM05D002708 ORTHO05D003516 4.1e-16 90.5 300 23.0
SEGI_26246 Sequoiadendron giganteum HOM05D002708 ORTHO05D003516 5.3e-16 90.1 300 23.0
SEGI_28578 Sequoiadendron giganteum HOM05D002708 ORTHO05D003516 5.3e-16 90.1 300 22.7
Dinv33202 Davidia involucrata HOM05D005198 ORTHO05D006839 1.5e-15 88.6 55 70.9
Mapoly0108s0028 Marchantia polymorpha HOM05D002708 ORTHO05D003516 2.0e-15 88.2 407 18.9
MBI03_g14783_MAGBIO Magnolia biondii HOM05D005198 ORTHO05D006839 5.9e-15 86.7 59 69.5
Lsat_1_v5_gn_5_150841 Lactuca sativa HOM05D005198 ORTHO05D004031 2.2e-14 84.7 45 82.2
SGA_v2.0_scaffold649G53360 Striga asiatica HOM05D005198 ORTHO05D006839 1.4e-11 75.5 48 72.9
MBI07_g28641_MAGBIO Magnolia biondii HOM05D000992 ORTHO05D001928 3.0e-11 74.3 46 73.9
COL.COLO4_29149 Corchorus olitorius HOM05D005198 ORTHO05D006839 6.7e-11 73.2 198 30.3
Lj1g0008805 Lotus japonicus HOM05D002708 ORTHO05D003516 6.7e-11 73.2 194 24.2
Os02g0606100 Oryza sativa ssp. japonica HOM05D005198 ORTHO05D006839 1.1e-10 72.4 115 46.1
Lj4A14T51 Lonicera japonica HOM05D005198 ORTHO05D006839 7.0e-08 63.2 67 70.1
Nitab4.5_0012432g0010 Nicotiana tabacum HOM05D002708 ORTHO05D003516 2.2e-06 58.2 129 24.8


User provided reference genes

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