Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA232G1033 Erigeron canadensis HOM05D004003 ORTHO05D004595 5.1e-96 354.4 175 100.0
Lsat_1_v5_gn_9_56860 Lactuca sativa HOM05D004003 ORTHO05D004595 4.1e-85 318.2 171 87.7
HanXRQChr15g0494181 Helianthus annuus HOM05D004003 ORTHO05D004595 3.8e-83 311.6 174 85.1
ECA233G0998 Erigeron canadensis HOM05D004003 ORTHO05D004595 3.9e-80 301.6 176 85.2
Lsat_1_v5_gn_2_131500 Lactuca sativa HOM05D004003 ORTHO05D004595 2.4e-77 292.4 173 83.2
Oeu061668.1 Olea europaea HOM05D004003 ORTHO05D004595 2.6e-76 288.9 170 82.4
DCAR_010652 Daucus carota HOM05D004003 ORTHO05D004595 3.4e-76 288.5 172 80.8
Lj1A1007T57 Lonicera japonica HOM05D004003 ORTHO05D004595 5.5e-74 281.2 177 78.5
Lj1A1007T58 Lonicera japonica HOM05D004003 ORTHO05D004595 5.5e-74 281.2 177 78.5
Oeu003331.1 Olea europaea HOM05D004003 ORTHO05D004595 2.1e-73 279.3 173 79.2
Hma1.2p1_1713F.1_g298900 Hydrangea macrophylla HOM05D004003 ORTHO05D004595 2.7e-73 278.9 177 76.8
Sed0009881 Sechium edule HOM05D004003 ORTHO05D004595 6.1e-73 277.7 163 81.6
Sed0014667 Sechium edule HOM05D004003 ORTHO05D004595 6.1e-73 277.7 171 79.5
Actinidia03142 Actinidia chinensis HOM05D004003 ORTHO05D004595 1.0e-72 276.9 173 78.6
Actinidia31844 Actinidia chinensis HOM05D004003 ORTHO05D004595 1.8e-72 276.2 175 77.1
SGA_v2.0_scaffold10G05280 Striga asiatica HOM05D004003 ORTHO05D004595 2.3e-72 275.8 173 77.5
MELO3C006949.2 Cucumis melo HOM05D004003 ORTHO05D004595 5.1e-72 274.6 171 78.4
MSTRG.8697 Avicennia marina HOM05D004003 ORTHO05D004595 6.7e-72 274.2 178 74.7
CSS0000705 Camellia sinensis var. sinensis HOM05D004003 ORTHO05D004595 6.7e-72 274.2 173 77.5
CsaV3_3G017590 Cucumis sativus L. HOM05D004003 ORTHO05D004595 6.7e-72 274.2 171 77.8
Cc02_g02230 Coffea canephora HOM05D004003 ORTHO05D004595 1.1e-71 273.5 177 75.1
Dinv35269 Davidia involucrata HOM05D004003 ORTHO05D004595 1.1e-71 273.5 164 79.3
Manes.06G153700 Manihot esculenta HOM05D004003 ORTHO05D004595 1.1e-71 273.5 155 83.2
Peaxi162Scf00444g00034 Petunia axillaris HOM05D004003 ORTHO05D004595 1.1e-71 273.5 174 74.7
ClCG05G008500 Citrullus lanatus HOM05D004003 ORTHO05D004595 2.0e-71 272.7 171 77.2
COL.COLO4_30289 Corchorus olitorius HOM05D004003 ORTHO05D004595 2.6e-71 272.3 153 85.0
Duzib084G0289 Durio zibethinus HOM05D004003 ORTHO05D004595 2.6e-71 272.3 171 78.9
Manes.14G021000 Manihot esculenta HOM05D004003 ORTHO05D004595 2.6e-71 272.3 155 83.2
Solyc06g036350.3 Solanum lycopersicum HOM05D004003 ORTHO05D004595 2.6e-71 272.3 171 77.2
Sopen06g012130 Solanum pennellii HOM05D004003 ORTHO05D004595 3.3e-71 271.9 171 77.2
Duzib205G1856 Durio zibethinus HOM05D004003 ORTHO05D004595 4.4e-71 271.6 171 78.9
Gohir.D11G013100 Gossypium hirsutum HOM05D004003 ORTHO05D004595 5.7e-71 271.2 171 78.4
Rhsim03G0192400 Rhododendron simsii HOM05D004003 ORTHO05D004595 5.7e-71 271.2 161 81.4
SalBow2G3526 Salvia bowleyana HOM05D004003 ORTHO05D004595 7.4e-71 270.8 174 77.6
PGSC0003DMG400028905 Solanum tuberosum HOM05D004003 ORTHO05D004595 9.7e-71 270.4 173 75.7
DCAR_020275 Daucus carota HOM05D004003 ORTHO05D004595 1.3e-70 270.0 156 82.7
QL09p012375 Quercus lobata HOM05D004003 ORTHO05D004595 1.7e-70 269.6 153 83.7
Rhsim09G0201100 Rhododendron simsii HOM05D004003 ORTHO05D004595 2.2e-70 269.2 174 76.4
Actinidia08590 Actinidia chinensis HOM05D004003 ORTHO05D004595 2.8e-70 268.9 177 75.7
Migut.F01081 Erythranthe guttata HOM05D004003 ORTHO05D004595 2.8e-70 268.9 171 76.0
MD07G1280400 Malus domestica HOM05D004003 ORTHO05D004595 2.8e-70 268.9 171 76.6
Nitab4.5_0011314g0010 Nicotiana tabacum HOM05D004003 ORTHO05D004595 2.8e-70 268.9 174 75.3
Gohir.A11G012800 Gossypium hirsutum HOM05D004003 ORTHO05D004595 3.7e-70 268.5 171 77.8
Lj2g0001989 Lotus japonicus HOM05D004003 ORTHO05D004595 3.7e-70 268.5 173 75.1
CiPaw.06G004300 Carya illinoinensis HOM05D004003 ORTHO05D004595 4.8e-70 268.1 172 75.6
Eucgr.A02717 Eucalyptus grandis HOM05D004003 ORTHO05D004595 6.3e-70 267.7 163 76.7
Solyc03g007660.4 Solanum lycopersicum HOM05D004003 ORTHO05D004595 1.1e-69 266.9 174 74.7
Sopen03g003590 Solanum pennellii HOM05D004003 ORTHO05D004595 1.1e-69 266.9 174 74.7
Gorai.007G013400 Gossypium raimondii HOM05D004003 ORTHO05D004595 1.8e-69 266.2 173 77.5
MD01G1210300 Malus domestica HOM05D004003 ORTHO05D004595 2.4e-69 265.8 171 74.9
Prupe.2G302600 Prunus persica HOM05D004003 ORTHO05D004595 2.4e-69 265.8 163 79.8
Thecc.03G186200 Theobroma cacao HOM05D004003 ORTHO05D004595 3.1e-69 265.4 153 83.0
unitig_0.g1158 Utricularia gibba HOM05D004003 ORTHO05D004595 3.1e-69 265.4 158 80.4
THA.LOC104800278 Tarenaya hassleriana HOM05D004003 ORTHO05D004595 4.1e-69 265.0 166 77.1
CARHR265770 Cardamine hirsuta HOM05D004003 ORTHO05D004595 5.3e-69 264.6 175 72.6
CAN.G126.15 Capsicum annuum HOM05D004003 ORTHO05D004595 7.0e-69 264.2 174 73.6
Ciclev10006072m.g Citrus clementina HOM05D004003 ORTHO05D004595 9.1e-69 263.8 172 76.7
THA.LOC104825117 Tarenaya hassleriana HOM05D004003 ORTHO05D004595 1.2e-68 263.5 157 79.6
Aqoxy7G00202 Aquilegia oxysepala HOM05D004003 ORTHO05D004595 1.5e-68 263.1 171 74.9
EL10Ac2g03211 Beta vulgaris HOM05D004003 ORTHO05D004595 1.5e-68 263.1 153 81.0
TWI23G0858 Tripterygium wilfordii HOM05D004003 ORTHO05D004595 1.5e-68 263.1 161 79.5
Ah.11g045360 Amaranthus hybridus HOM05D004003 ORTHO05D004595 2.0e-68 262.7 165 77.0
PGR042G1718 Punica granatum HOM05D004003 ORTHO05D004595 2.0e-68 262.7 157 80.3
Hund13071 Selenicereus undatus HOM05D004003 ORTHO05D004595 2.0e-68 262.7 153 81.7
GSVIVG01028820001 Vitis vinifera HOM05D004003 ORTHO05D004595 2.6e-68 262.3 172 75.0
Atru.chr1.335 Acer truncatum HOM05D004003 ORTHO05D004595 3.5e-68 261.9 153 82.4
BraA03t10847Z Brassica rapa HOM05D004003 ORTHO05D004595 3.5e-68 261.9 175 72.0
Thhalv10026409m.g Eutrema salsugineum HOM05D004003 ORTHO05D004595 3.5e-68 261.9 153 81.0
Nitab4.5_0000472g0260 Nicotiana tabacum HOM05D004003 ORTHO05D004595 3.5e-68 261.9 159 79.9
Sc14g0006860 Simmondsia chinensis HOM05D004003 ORTHO05D004595 3.5e-68 261.9 162 76.5
BcaC01g06202 Brassica carinata HOM05D004003 ORTHO05D004595 4.5e-68 261.5 175 72.0
A03p15550 Brassica napus HOM05D004003 ORTHO05D004595 4.5e-68 261.5 175 72.0
C03p18160 Brassica napus HOM05D004003 ORTHO05D004595 4.5e-68 261.5 175 72.0
Gorai.008G273600 Gossypium raimondii HOM05D004003 ORTHO05D004595 4.5e-68 261.5 171 74.9
TWI14G1326 Tripterygium wilfordii HOM05D004003 ORTHO05D004595 4.5e-68 261.5 156 81.4
Dinv28379 Davidia involucrata HOM05D004003 ORTHO05D004595 7.7e-68 260.8 150 84.7
AL8G27280 Arabidopsis lyrata HOM05D004003 ORTHO05D004595 1.0e-67 260.4 173 74.0
Thhalv10014849m.g Eutrema salsugineum HOM05D004003 ORTHO05D004595 1.0e-67 260.4 155 79.4
PSO017G3679 Papaver somniferum HOM05D004003 ORTHO05D004595 1.0e-67 260.4 176 73.3
BolC3t14217H Brassica oleracea HOM05D004003 ORTHO05D004595 1.3e-67 260.0 175 71.4
Gohir.D12G255500 Gossypium hirsutum HOM05D004003 ORTHO05D004595 1.3e-67 260.0 171 74.3
Gohir.D12G255550 Gossypium hirsutum HOM05D004003 ORTHO05D004595 1.3e-67 260.0 171 74.3
Glyma.09G129000 Glycine max HOM05D004003 ORTHO05D004595 1.7e-67 259.6 167 77.2
Lalb_Chr19g0130491 Lupinus albus HOM05D004003 ORTHO05D004595 1.7e-67 259.6 157 79.0
VMungo0464G2050 Vigna mungo HOM05D004003 ORTHO05D004595 1.7e-67 259.6 173 73.4
PSO478G4828 Papaver somniferum HOM05D004003 ORTHO05D004595 2.2e-67 259.2 173 73.4
Aa31LG3G9080 Aethionema arabicum HOM05D004003 ORTHO05D004595 2.9e-67 258.8 155 78.7
BcaB01g04212 Brassica carinata HOM05D004003 ORTHO05D004595 2.9e-67 258.8 162 75.3
BraA02t06220Z Brassica rapa HOM05D004003 ORTHO05D004595 2.9e-67 258.8 167 73.7
A02p11580 Brassica napus HOM05D004003 ORTHO05D004595 3.8e-67 258.5 167 73.7
BcaB08g35638 Brassica carinata HOM05D004003 ORTHO05D004595 5.0e-67 258.1 155 78.1
BraA10t43109Z Brassica rapa HOM05D004003 ORTHO05D004595 5.0e-67 258.1 168 73.8
FAN10G2159 Fragaria x ananassa HOM05D004003 ORTHO05D004595 6.5e-67 257.7 163 76.7
arahy.Tifrunner.gnm1.ann1.SB31NP Arachis hypogaea HOM05D004003 ORTHO05D004595 8.5e-67 257.3 173 72.8
RcHm_v2.0_Chr1g0378851 Rosa chinensis HOM05D004003 ORTHO05D004595 8.5e-67 257.3 163 77.3
AUR62037745 Chenopodium quinoa HOM05D004003 ORTHO05D004595 1.1e-66 256.9 174 70.7
FvH4_7g30480 Fragaria vesca HOM05D004003 ORTHO05D004595 1.1e-66 256.9 163 76.7
FAN01G1512 Fragaria x ananassa HOM05D004003 ORTHO05D004595 1.1e-66 256.9 163 76.7
FAN06G3020 Fragaria x ananassa HOM05D004003 ORTHO05D004595 1.1e-66 256.9 163 76.7
Phvul.004G105700 Phaseolus vulgaris HOM05D004003 ORTHO05D004595 1.1e-66 256.9 172 73.8
arahy.Tifrunner.gnm1.ann1.R03NAB Arachis hypogaea HOM05D004003 ORTHO05D004595 1.5e-66 256.5 173 72.8
Ca_20595_v3 Cicer arietinum L. HOM05D004003 ORTHO05D004595 1.5e-66 256.5 155 78.7
FAN03G0349 Fragaria x ananassa HOM05D004003 ORTHO05D004595 1.5e-66 256.5 163 76.1
FAN03G2611 Fragaria x ananassa HOM05D004003 ORTHO05D004595 1.5e-66 256.5 163 76.1
Sp7g25950 Schrenkiella parvula HOM05D004003 ORTHO05D004595 1.5e-66 256.5 174 73.0
AT5G52840 Arabidopsis thaliana HOM05D004003 ORTHO05D004595 1.9e-66 256.1 174 71.8
BcaC04g20535 Brassica carinata HOM05D004003 ORTHO05D004595 1.9e-66 256.1 168 73.8
C09p42440 Brassica napus HOM05D004003 ORTHO05D004595 1.9e-66 256.1 168 73.8
Sp6g15000 Schrenkiella parvula HOM05D004003 ORTHO05D004595 1.9e-66 256.1 155 77.4
Carub.0008s1300 Capsella rubella HOM05D004003 ORTHO05D004595 2.5e-66 255.8 162 74.1
FAN06G1184 Fragaria x ananassa HOM05D004003 ORTHO05D004595 2.5e-66 255.8 163 76.7
Nn6g32413 Nelumbo nucifera HOM05D004003 ORTHO05D004595 2.5e-66 255.8 171 71.3
FAN10G2319 Fragaria x ananassa HOM05D004003 ORTHO05D004595 4.2e-66 255.0 163 76.1
A10p10290 Brassica napus HOM05D004003 ORTHO05D004595 5.5e-66 254.6 168 73.2
Gohir.A12G253200 Gossypium hirsutum HOM05D004003 ORTHO05D004595 5.5e-66 254.6 171 72.5
Psat0s1604g0040 Pisum sativum HOM05D004003 ORTHO05D004595 5.5e-66 254.6 182 70.9
Psat5g299680 Pisum sativum HOM05D004003 ORTHO05D004595 7.2e-66 254.2 182 71.4
CANSAT21G1389 Cannabis sativa HOM05D004003 ORTHO05D004595 9.4e-66 253.8 153 77.1
CANSAT21G1446 Cannabis sativa HOM05D004003 ORTHO05D004595 9.4e-66 253.8 153 77.1
TAR629G0127 Trochodendron aralioides HOM05D004003 ORTHO05D004595 9.4e-66 253.8 169 73.4
Potri.004G071900 Populus trichocarpa HOM05D004003 ORTHO05D004595 1.2e-65 253.4 174 70.1
vmacro06614 Vaccinium macrocarpon HOM05D004003 ORTHO05D004595 1.6e-65 253.1 230 59.6
BcaB05g21985 Brassica carinata HOM05D004003 ORTHO05D004595 2.1e-65 252.7 165 72.1
Lalb_Chr03g0034981 Lupinus albus HOM05D004003 ORTHO05D004595 4.7e-65 251.5 155 77.4
HPP92_001384 Vanilla planifolia HOM05D004003 ORTHO05D004595 4.7e-65 251.5 173 72.3
Medtr6g053280 Medicago truncatula HOM05D004003 ORTHO05D004595 3.0e-64 248.8 182 69.2
TPR.G27150 Trifolium pratense HOM05D004003 ORTHO05D004595 8.8e-64 247.3 166 74.1
C02p19300 Brassica napus HOM05D004003 ORTHO05D004595 7.4e-63 244.2 155 74.8
BolC2t08066H Brassica oleracea HOM05D004003 ORTHO05D004595 7.4e-63 244.2 155 74.8
Sabra04G0047300 Salix brachista HOM05D004003 ORTHO05D004595 1.3e-62 243.4 155 74.8
Potri.017G149100 Populus trichocarpa HOM05D004003 ORTHO05D004595 8.2e-62 240.7 174 66.7
Sabra17G0124400 Salix brachista HOM05D004003 ORTHO05D004595 8.2e-62 240.7 155 72.3
Zm00001eb015010 Zea mays HOM05D004003 ORTHO05D004595 1.8e-61 239.6 157 72.6
CDE05G0545 Ceratophyllum demersum HOM05D004003 ORTHO05D004595 1.2e-60 236.9 154 74.7
Os03g0313000 Oryza sativa ssp. japonica HOM05D004003 ORTHO05D004595 1.2e-60 236.9 157 72.6
CDE05G3305 Ceratophyllum demersum HOM05D004003 ORTHO05D004595 3.5e-60 235.3 163 69.9
ATR0721G154 Amborella trichopoda HOM05D004003 ORTHO05D004595 5.0e-59 231.5 139 76.3
PSO478G1314 Papaver somniferum HOM05D004003 ORTHO05D004595 5.5e-58 228.0 146 74.0
AUR62042233 Chenopodium quinoa HOM05D004003 ORTHO05D004595 7.5e-55 217.6 174 62.1
Haze_00063 Corylus avellana HOM05D004003 ORTHO05D004595 4.1e-53 211.8 132 78.8
SEGI_14933 Sequoiadendron giganteum HOM05D004003 ORTHO05D004595 2.9e-51 205.7 146 65.8
TAR636G0624 Trochodendron aralioides HOM05D004003 ORTHO05D004595 1.1e-50 203.8 125 78.4
HanXRQChr10g0304961 Helianthus annuus HOM05D004003 ORTHO05D004595 3.6e-49 198.7 108 90.7
BolC9t57124H Brassica oleracea HOM05D004003 ORTHO05D004595 4.7e-49 198.4 168 59.5
MD00G1172600 Malus domestica HOM05D004003 ORTHO05D004595 2.3e-48 196.1 129 72.9
MD13G1261600 Malus domestica HOM05D004003 ORTHO05D004595 3.5e-44 182.2 111 75.7
vmacro09809 Vaccinium macrocarpon HOM05D004003 ORTHO05D004595 9.5e-42 174.1 146 59.6
Pp3c5_12290 Physcomitrium patens HOM05D004003 ORTHO05D004595 2.8e-41 172.6 138 60.1
Ah.10g032500 Amaranthus hybridus HOM05D004003 ORTHO05D004595 4.7e-41 171.8 156 58.3
AagrBONN_evm.TU.Sc2ySwM_344.4010 Anthoceros agrestis HOM05D004003 ORTHO05D004595 1.8e-40 169.9 138 58.7
CBR_g31069 Chara braunii HOM05D004003 ORTHO05D004595 4.0e-40 168.7 137 58.4
Mapoly0111s0029 Marchantia polymorpha HOM05D004003 ORTHO05D004595 1.2e-39 167.2 138 58.0
Zm00001eb395850 Zea mays HOM05D004003 ORTHO05D004595 5.9e-36 154.8 112 70.5
Thhalv10015894m.g Eutrema salsugineum HOM05D004003 ORTHO05D004595 2.8e-33 146.0 162 52.5
SMO119G0129 Selaginella moellendorffii HOM05D004003 ORTHO05D004595 2.8e-33 146.0 120 55.8
BcaC03g14495 Brassica carinata HOM05D004003 ORTHO05D004595 4.9e-30 135.2 92 73.9
RcHm_v2.0_Chr1g0362161 Rosa chinensis HOM05D004003 ORTHO05D004595 1.6e-28 130.2 90 73.3
Ah.03g141030 Amaranthus hybridus HOM05D004003 ORTHO05D004595 2.0e-28 129.8 104 61.5
Psat6g098040 Pisum sativum HOM05D000395 ORTHO05D004595 8.6e-27 124.4 96 66.7
CAN.G311.32 Capsicum annuum HOM05D005247 ORTHO05D006571 2.5e-26 122.9 107 63.6
ECA238G0868 Erigeron canadensis HOM05D004003 ORTHO05D004595 2.3e-24 116.3 163 40.5
ECA240G4047 Erigeron canadensis HOM05D004003 ORTHO05D004595 9.8e-23 110.9 141 38.3
ECA240G1980 Erigeron canadensis HOM05D004003 ORTHO05D004595 2.9e-22 109.4 130 44.6
ECA240G4361 Erigeron canadensis HOM05D004003 ORTHO05D004595 2.9e-22 109.4 130 44.6
Dinv24022 Davidia involucrata HOM05D004003 ORTHO05D004595 6.4e-22 108.2 71 76.1
CAN.G204.11 Capsicum annuum HOM05D004003 ORTHO05D004595 1.9e-21 106.7 57 80.7
AT4G28005 Arabidopsis thaliana HOM05D004003 ORTHO05D004595 6.6e-19 98.2 173 39.9
BcaC03g14494 Brassica carinata HOM05D004003 ORTHO05D004595 1.1e-18 97.4 49 77.6
COL.COLO4_06858 Corchorus olitorius HOM05D004003 ORTHO05D004595 2.5e-18 96.3 44 88.6
CAN.G640.19 Capsicum annuum HOM05D004003 ORTHO05D004595 2.8e-17 92.8 69 60.9
Rhsim03G0124900 Rhododendron simsii HOM05D004003 ORTHO05D004595 1.1e-16 90.9 55 78.2
MCO01G593 Micromonas commoda HOM05D004003 ORTHO05D004595 2.3e-16 89.7 100 43.0
MCO01G594 Micromonas commoda HOM05D004003 ORTHO05D004595 2.3e-16 89.7 100 43.0
Haze_26197 Corylus avellana HOM05D004003 ORTHO05D004595 3.7e-14 82.4 101 41.6
ATR0721G175 Amborella trichopoda HOM05D004003 ORTHO05D004595 2.3e-11 73.2 56 53.6
Cre13.g568800 Chlamydomonas reinhardtii HOM05D004003 ORTHO05D004595 4.3e-10 68.9 109 40.4
PRCOL_00006691 Prasinoderma coloniale HOM05D004003 ORTHO05D004595 6.4e-06 55.1 97 38.1


User provided reference genes

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