Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA232G0981 Erigeron canadensis HOM05D004071 ORTHO05D004501 2.7e-173 612.1 342 100.0
HanXRQChr09g0263441 Helianthus annuus HOM05D004071 ORTHO05D004501 4.4e-152 541.6 333 90.1
Lsat_1_v5_gn_4_175840 Lactuca sativa HOM05D004071 ORTHO05D004501 1.4e-145 520.0 349 85.7
Lsat_1_v5_gn_2_86560 Lactuca sativa HOM05D004071 ORTHO05D004501 1.4e-142 510.0 341 76.2
Ciclev10012116m.g Citrus clementina HOM05D004071 ORTHO05D004501 1.9e-139 499.6 345 71.9
Cc07_g04980 Coffea canephora HOM05D004071 ORTHO05D004501 1.4e-137 493.4 349 75.6
COL.COLO4_04619 Corchorus olitorius HOM05D004071 ORTHO05D004501 1.8e-137 493.0 347 74.6
Thecc.04G143800 Theobroma cacao HOM05D004071 ORTHO05D004501 3.1e-137 492.3 347 74.4
CiPaw.04G003700 Carya illinoinensis HOM05D004071 ORTHO05D004501 1.2e-136 490.3 344 70.9
Cfa007968 Carpinus fangiana HOM05D004071 ORTHO05D004501 1.7e-135 486.5 347 72.6
Peaxi162Scf01056g00238 Petunia axillaris HOM05D004071 ORTHO05D004501 2.9e-135 485.7 348 75.6
CsaV3_5G039030 Cucumis sativus L. HOM05D004071 ORTHO05D004501 3.8e-135 485.3 347 74.1
Duzib268G0320 Durio zibethinus HOM05D004071 ORTHO05D004501 3.8e-135 485.3 350 78.6
SGA_v2.0_scaffold204G41658 Striga asiatica HOM05D004071 ORTHO05D004501 4.9e-135 485.0 347 75.8
Oeu049330.1 Olea europaea HOM05D004071 ORTHO05D004501 8.4e-135 484.2 342 69.9
CAN.G153.14 Capsicum annuum HOM05D004071 ORTHO05D004501 1.4e-134 483.4 351 76.1
Dinv34868 Davidia involucrata HOM05D004071 ORTHO05D004501 1.4e-134 483.4 337 78.9
Atru.chr10.1868 Acer truncatum HOM05D004071 ORTHO05D004501 1.9e-134 483.0 347 68.9
Oeu025120.1 Olea europaea HOM05D004071 ORTHO05D004501 3.2e-134 482.3 345 73.6
Gorai.001G203600 Gossypium raimondii HOM05D004071 ORTHO05D004501 4.1e-134 481.9 347 72.9
CiPaw.03G006000 Carya illinoinensis HOM05D004071 ORTHO05D004501 5.4e-134 481.5 347 73.5
CANSAT64G0921 Cannabis sativa HOM05D004071 ORTHO05D004501 6.0e-133 478.0 347 70.3
Gohir.D07G183200 Gossypium hirsutum HOM05D004071 ORTHO05D004501 1.0e-132 477.2 347 71.8
Gohir.A07G176100 Gossypium hirsutum HOM05D004071 ORTHO05D004501 3.0e-132 475.7 347 72.0
HanXRQChr07g0200191 Helianthus annuus HOM05D004071 ORTHO05D004501 3.9e-132 475.3 345 72.5
Hma1.2p1_0550F.1_g177140 Hydrangea macrophylla HOM05D004071 ORTHO05D004501 3.9e-132 475.3 345 70.1
CSS0015718 Camellia sinensis var. sinensis HOM05D004071 ORTHO05D004501 5.1e-132 474.9 344 68.0
SalBow1G4702 Salvia bowleyana HOM05D004071 ORTHO05D004501 5.1e-132 474.9 350 72.6
GSVIVG01036463001 Vitis vinifera HOM05D004071 ORTHO05D004501 5.1e-132 474.9 339 78.2
Gohir.A08G037600 Gossypium hirsutum HOM05D004071 ORTHO05D004501 6.6e-132 474.6 342 76.9
Prupe.3G241500 Prunus persica HOM05D004071 ORTHO05D004501 6.6e-132 474.6 342 69.3
Gorai.004G047400 Gossypium raimondii HOM05D004071 ORTHO05D004501 1.5e-131 473.4 342 77.5
MD17G1072900 Malus domestica HOM05D004071 ORTHO05D004501 1.9e-131 473.0 342 68.1
Migut.H00537 Erythranthe guttata HOM05D004071 ORTHO05D004501 2.5e-131 472.6 349 73.6
Gohir.A07G073300 Gossypium hirsutum HOM05D004071 ORTHO05D004501 2.5e-131 472.6 337 68.0
Gorai.001G082400 Gossypium raimondii HOM05D004071 ORTHO05D004501 2.5e-131 472.6 337 69.1
ClCG11G005270 Citrullus lanatus HOM05D004071 ORTHO05D004501 3.3e-131 472.2 347 74.1
Gohir.D08G047900 Gossypium hirsutum HOM05D004071 ORTHO05D004501 3.3e-131 472.2 342 76.9
PGSC0003DMG400018768 Solanum tuberosum HOM05D004071 ORTHO05D004501 3.3e-131 472.2 350 72.6
Migut.K00863 Erythranthe guttata HOM05D004071 ORTHO05D004501 4.3e-131 471.9 342 70.8
SalBow1G4945 Salvia bowleyana HOM05D004071 ORTHO05D004501 4.3e-131 471.9 350 72.3
TAR622G0876 Trochodendron aralioides HOM05D004071 ORTHO05D004501 5.6e-131 471.5 342 71.3
Oeu032872.2 Olea europaea HOM05D004071 ORTHO05D004501 9.6e-131 470.7 345 69.0
Psat1g062200 Pisum sativum HOM05D004071 ORTHO05D004501 9.6e-131 470.7 349 69.1
Potri.004G104900 Populus trichocarpa HOM05D004071 ORTHO05D004501 3.6e-130 468.8 347 68.0
MELO3C022067.2 Cucumis melo HOM05D004071 ORTHO05D004501 4.7e-130 468.4 348 69.8
Medtr6g016780 Medicago truncatula HOM05D004071 ORTHO05D004501 8.1e-130 467.6 350 70.9
Lj4A130T17 Lonicera japonica HOM05D004071 ORTHO05D004501 3.1e-129 465.7 349 76.8
Sed0017773 Sechium edule HOM05D004071 ORTHO05D004501 3.1e-129 465.7 347 71.2
EL10Ac2g04623 Beta vulgaris HOM05D004071 ORTHO05D004501 4.0e-129 465.3 346 73.1
Gohir.D07G078000 Gossypium hirsutum HOM05D004071 ORTHO05D004501 5.2e-129 464.9 353 66.0
Solyc03g045090.3 Solanum lycopersicum HOM05D004071 ORTHO05D004501 5.2e-129 464.9 349 73.9
TPR.G9685 Trifolium pratense HOM05D004071 ORTHO05D004501 9.0e-129 464.2 348 66.4
MSTRG.23829 Avicennia marina HOM05D004071 ORTHO05D004501 1.2e-128 463.8 349 69.3
Cpa.g.sc179.42 Carica papaya HOM05D004071 ORTHO05D004501 1.5e-128 463.4 345 69.9
Lj2g0019369 Lotus japonicus HOM05D004071 ORTHO05D004501 1.5e-128 463.4 348 68.1
Phvul.004G073300 Phaseolus vulgaris HOM05D004071 ORTHO05D004501 3.4e-128 462.2 346 66.5
Sopen03g009550 Solanum pennellii HOM05D004071 ORTHO05D004501 7.6e-128 461.1 351 75.2
Actinidia26308 Actinidia chinensis HOM05D004071 ORTHO05D004501 1.3e-127 460.3 345 75.9
VMungo0464G1781 Vigna mungo HOM05D004071 ORTHO05D004501 3.8e-127 458.8 346 74.3
TWI74G0934 Tripterygium wilfordii HOM05D004071 ORTHO05D004501 6.4e-127 458.0 346 77.7
Ca_14084_v3 Cicer arietinum L. HOM05D004071 ORTHO05D004501 8.4e-127 457.6 349 69.3
DCAR_007521 Daucus carota HOM05D000912 ORTHO05D004501 8.4e-127 457.6 341 66.9
PSO782G5396 Papaver somniferum HOM05D004071 ORTHO05D004501 8.4e-127 457.6 349 71.9
Rhsim08G0080100 Rhododendron simsii HOM05D004071 ORTHO05D004501 1.1e-126 457.2 342 70.2
Glyma.13G047900 Glycine max HOM05D004071 ORTHO05D004501 1.4e-126 456.8 348 65.8
FAN09G0395 Fragaria x ananassa HOM05D000085 ORTHO05D004501 3.2e-126 455.7 344 67.7
PSO063G1546 Papaver somniferum HOM05D004071 ORTHO05D004501 3.2e-126 455.7 346 74.0
MD09G1082200 Malus domestica HOM05D004071 ORTHO05D004501 4.2e-126 455.3 342 65.8
arahy.Tifrunner.gnm1.ann1.SG5ZZ4 Arachis hypogaea HOM05D004071 ORTHO05D004501 9.3e-126 454.1 338 69.5
arahy.Tifrunner.gnm1.ann1.85GVTZ Arachis hypogaea HOM05D004071 ORTHO05D004501 2.7e-125 452.6 346 65.0
FAN02G1076 Fragaria x ananassa HOM05D000085 ORTHO05D004501 3.5e-125 452.2 343 74.1
FvH4_6g45520 Fragaria vesca HOM05D004071 ORTHO05D004501 4.6e-125 451.8 345 74.5
FAN14G5468 Fragaria x ananassa HOM05D000085 ORTHO05D004501 4.6e-125 451.8 343 74.1
MBI16_g36053_MAGBIO Magnolia biondii HOM05D004071 ORTHO05D004501 4.6e-125 451.8 368 61.4
Aqoxy3G00414 Aquilegia oxysepala HOM05D004071 ORTHO05D004501 6.0e-125 451.4 343 66.2
arahy.Tifrunner.gnm1.ann1.UUQR92 Arachis hypogaea HOM05D004071 ORTHO05D004501 7.8e-125 451.1 338 69.2
SGA_v2.0_scaffold150G36618 Striga asiatica HOM05D002617 ORTHO05D009035 7.8e-125 451.1 342 68.7
CARHR076390 Cardamine hirsuta HOM05D004071 ORTHO05D004501 2.3e-124 449.5 347 68.9
TAR629G1013 Trochodendron aralioides HOM05D004071 ORTHO05D004501 2.3e-124 449.5 345 71.6
FAN05G3345 Fragaria x ananassa HOM05D004071 ORTHO05D004501 3.0e-124 449.1 344 73.8
THA.LOC104827150 Tarenaya hassleriana HOM05D004071 ORTHO05D004501 3.9e-124 448.7 346 69.9
RcHm_v2.0_Chr2g0163461 Rosa chinensis HOM05D004071 ORTHO05D004501 5.1e-124 448.4 349 74.2
Manes.02G065500 Manihot esculenta HOM05D004071 ORTHO05D004501 6.6e-124 448.0 349 68.2
PGR042G1023 Punica granatum HOM05D004071 ORTHO05D004501 6.2e-122 441.4 344 68.3
Hund13742 Selenicereus undatus HOM05D004071 ORTHO05D004501 6.2e-122 441.4 352 65.6
Nn3g17651 Nelumbo nucifera HOM05D004071 ORTHO05D004501 1.8e-121 439.9 345 67.2
AUR62008952 Chenopodium quinoa HOM05D004071 ORTHO05D004501 4.5e-120 435.3 343 67.9
Ah.16g102220 Amaranthus hybridus HOM05D004071 ORTHO05D004501 7.6e-120 434.5 354 71.2
Sed0022702 Sechium edule HOM05D004071 ORTHO05D004501 5.4e-118 428.3 328 65.2
CDE08G1388 Ceratophyllum demersum HOM05D004071 ORTHO05D004501 1.2e-117 427.2 333 63.1
Hma1.2p1_0136F.1_g061955 Hydrangea macrophylla HOM05D004071 ORTHO05D004501 6.7e-116 421.4 302 69.2
Lalb_Chr17g0336551 Lupinus albus HOM05D004071 ORTHO05D004501 8.7e-116 421.0 338 68.9
Potri.017G110600 Populus trichocarpa HOM05D004071 ORTHO05D004501 2.5e-115 419.5 347 66.9
HPP92_011599 Vanilla planifolia HOM05D004071 ORTHO05D004501 2.5e-115 419.5 333 61.3
Nitab4.5_0004420g0040 Nicotiana tabacum HOM05D004071 ORTHO05D004501 4.3e-115 418.7 351 69.2
AUR62014550 Chenopodium quinoa HOM05D004071 ORTHO05D004501 5.6e-115 418.3 357 65.0
Zm00001eb161490 Zea mays HOM05D004071 ORTHO05D004501 7.4e-115 417.9 350 59.1
Rhsim10G0064500 Rhododendron simsii HOM05D004071 ORTHO05D004501 4.0e-113 412.1 339 61.9
Actinidia36304 Actinidia chinensis HOM05D004071 ORTHO05D004501 6.9e-113 411.4 343 59.8
Duzib133G0960 Durio zibethinus HOM05D004071 ORTHO05D004501 6.9e-113 411.4 347 65.7
Os01g0604700 Oryza sativa ssp. japonica HOM05D004071 ORTHO05D004501 9.0e-113 411.0 338 59.5
PGSC0003DMG400010091 Solanum tuberosum HOM05D004071 ORTHO05D004501 9.0e-113 411.0 349 66.5
CDE06G1497 Ceratophyllum demersum HOM05D004071 ORTHO05D004501 3.4e-112 409.1 333 66.7
Nn4g23653 Nelumbo nucifera HOM05D004071 ORTHO05D004501 4.5e-112 408.7 302 76.8
Os05g0589000 Oryza sativa ssp. japonica HOM05D004071 ORTHO05D004501 5.8e-112 408.3 352 61.9
Sabra04G0076900 Salix brachista HOM05D004071 ORTHO05D004501 7.6e-112 407.9 448 52.0
unitig_62.g23397 Utricularia gibba HOM05D004071 ORTHO05D004501 1.3e-111 407.1 350 64.3
CSS0021599 Camellia sinensis var. sinensis HOM05D004071 ORTHO05D004501 6.4e-111 404.8 236 82.2
Carub.0003s0151 Capsella rubella HOM05D004071 ORTHO05D004501 1.9e-110 403.3 350 63.4
AT3G02420 Arabidopsis thaliana HOM05D004071 ORTHO05D004501 7.1e-110 401.4 352 62.5
Zm00001eb297500 Zea mays HOM05D004071 ORTHO05D004501 9.3e-110 401.0 348 64.7
Aa31LG5G12930 Aethionema arabicum HOM05D004071 ORTHO05D004501 3.5e-109 399.1 347 63.4
Thhalv10021061m.g Eutrema salsugineum HOM05D004071 ORTHO05D004501 4.6e-109 398.7 347 64.3
Hund16109 Selenicereus undatus HOM05D004071 ORTHO05D004501 6.0e-109 398.3 353 62.9
BcaC09g47699 Brassica carinata HOM05D004071 ORTHO05D004501 1.3e-108 397.1 339 59.6
BcaB04g21412 Brassica carinata HOM05D004071 ORTHO05D004501 1.8e-108 396.7 347 62.5
PSO017G6828 Papaver somniferum HOM05D004071 ORTHO05D004501 3.0e-108 396.0 347 55.6
BcaC05g30354 Brassica carinata HOM05D004071 ORTHO05D004501 2.1e-106 389.8 342 58.2
TWI77G0983 Tripterygium wilfordii HOM05D004071 ORTHO05D004501 2.8e-106 389.4 346 59.0
PSO478G0222 Papaver somniferum HOM05D004071 ORTHO05D004501 6.2e-106 388.3 348 54.0
BraA05t23141Z Brassica rapa HOM05D004071 ORTHO05D004501 1.1e-105 387.5 341 58.9
Sp3g01460 Schrenkiella parvula HOM05D004071 ORTHO05D004501 3.1e-105 386.0 347 59.1
HPP92_003788 Vanilla planifolia HOM05D004071 ORTHO05D004501 4.0e-105 385.6 341 55.4
vmacro18101 Vaccinium macrocarpon HOM05D004071 ORTHO05D004501 6.9e-105 384.8 343 58.0
unitig_32.g10761 Utricularia gibba HOM05D004071 ORTHO05D004501 2.0e-104 383.3 339 63.4
SEGI_38032 Sequoiadendron giganteum HOM05D004071 ORTHO05D004501 1.3e-103 380.6 335 63.0
ClCG05G012000 Citrullus lanatus HOM05D004071 ORTHO05D004501 1.4e-102 377.1 344 55.2
PGR004G2426 Punica granatum HOM05D004071 ORTHO05D004501 3.2e-102 375.9 293 70.6
vmacro05581 Vaccinium macrocarpon HOM05D004071 ORTHO05D004501 1.2e-101 374.0 428 56.5
Nitab4.5_0009272g0060 Nicotiana tabacum HOM05D004071 ORTHO05D004501 8.2e-98 361.3 359 62.1
Glyma.19G043700 Glycine max HOM05D004071 ORTHO05D004501 1.2e-96 357.5 297 68.0
Sed0014814 Sechium edule HOM05D004071 ORTHO05D004501 6.5e-95 351.7 344 50.6
Peaxi162Scf00479g00310 Petunia axillaris HOM05D004071 ORTHO05D004501 3.6e-93 345.9 301 72.4
TAR371G1199 Trochodendron aralioides HOM05D004071 ORTHO05D004501 5.1e-92 342.0 295 61.0
SMO164G0101 Selaginella moellendorffii HOM05D004071 ORTHO05D004501 1.2e-85 320.9 332 51.8
AagrBONN_evm.TU.Sc2ySwM_117.1813 Anthoceros agrestis HOM05D004071 ORTHO05D004501 1.8e-84 317.0 332 45.8
ATR0730G004 Amborella trichopoda HOM05D004071 ORTHO05D004501 9.7e-83 311.2 274 66.4
AL3G11710 Arabidopsis lyrata HOM05D004071 ORTHO05D004501 4.8e-82 308.9 300 55.0
Nitab4.5_0000612g0160 Nicotiana tabacum HOM05D004071 ORTHO05D004501 6.9e-81 305.1 342 52.0
Dinv33918 Davidia involucrata HOM05D004071 ORTHO05D004501 1.5e-80 303.9 187 79.1
Eucgr.I02122 Eucalyptus grandis HOM05D004071 ORTHO05D004501 5.9e-80 302.0 246 67.9
Gohir.A13G091200 Gossypium hirsutum HOM05D004071 ORTHO05D004501 7.7e-80 301.6 221 69.7
Mapoly0013s0171 Marchantia polymorpha HOM05D004071 ORTHO05D004501 1.0e-79 301.2 333 43.2
BolC5t35082H Brassica oleracea HOM05D004071 ORTHO05D007018 1.4e-78 297.4 289 54.3
QL02p053393 Quercus lobata HOM05D004071 ORTHO05D004501 1.9e-78 297.0 245 68.6
Sc10g0001400 Simmondsia chinensis HOM05D004071 ORTHO05D004501 2.0e-75 287.0 245 60.4
arahy.Tifrunner.gnm1.ann1.2VHL38 Arachis hypogaea HOM05D004071 ORTHO05D004501 2.2e-74 283.5 244 59.0
Pp3c7_9290 Physcomitrium patens HOM05D004071 ORTHO05D004501 8.2e-74 281.6 337 40.9
Lj7A9T84 Lonicera japonica HOM05D004071 ORTHO05D004501 2.4e-73 280.0 173 82.1
Zm00001eb158750 Zea mays HOM05D004071 ORTHO05D004501 5.3e-73 278.9 242 55.4
A05p45210 Brassica napus HOM05D002308 ORTHO05D007018 1.0e-71 274.6 279 52.0
C09p75710 Brassica napus HOM05D002308 ORTHO05D002535 2.9e-71 273.1 285 51.6
Os01g0641700 Oryza sativa ssp. japonica HOM05D004071 ORTHO05D004501 5.5e-70 268.9 232 55.6
DCAR_010977 Daucus carota HOM05D004071 ORTHO05D004501 2.1e-69 266.9 333 48.3
CDE05G2628 Ceratophyllum demersum HOM05D004071 ORTHO05D004501 7.5e-67 258.5 240 51.2
SHI25579 Sapria himalayana HOM05D004071 ORTHO05D004501 2.2e-66 256.9 232 55.6
BNapus_Darmor_BZH_scaffold_208p00070 Brassica napus HOM05D004071 ORTHO05D004501 9.4e-62 241.5 240 59.2
BraSC141t45626Z Brassica rapa HOM05D004071 ORTHO05D004501 9.4e-62 241.5 240 52.5
TPR.G28780 Trifolium pratense HOM05D004071 ORTHO05D004501 4.0e-60 236.1 145 75.9
Nitab4.5_0003161g0040 Nicotiana tabacum HOM05D004071 ORTHO05D004501 1.1e-57 228.0 134 82.1
BolC1t05906H Brassica oleracea HOM05D004071 ORTHO05D004501 2.3e-55 220.3 245 47.8
Gohir.A03G111050 Gossypium hirsutum HOM05D004071 ORTHO05D004501 5.8e-43 179.1 140 64.3
QL02p053385 Quercus lobata HOM05D004071 ORTHO05D004501 1.9e-41 174.1 102 81.4
Gohir.A04G081800 Gossypium hirsutum HOM05D004071 ORTHO05D004501 7.3e-38 162.2 131 65.6
Gohir.A13G168300 Gossypium hirsutum HOM05D004071 ORTHO05D004501 2.1e-37 160.6 128 65.6
unitig_52.g17623 Utricularia gibba HOM05D004071 ORTHO05D004501 9.8e-35 151.8 125 59.2
Dinv33917 Davidia involucrata HOM05D004071 ORTHO05D004501 8.3e-26 122.1 73 75.3
Solyc02g089780.3 Solanum lycopersicum HOM05D004071 ORTHO05D004501 5.4e-25 119.4 342 27.8
Actinidia17620 Actinidia chinensis HOM05D004071 ORTHO05D004501 1.6e-24 117.9 73 72.6
CBR_g39496 Chara braunii HOM05D004071 ORTHO05D004501 1.1e-22 111.7 145 35.2
SEGI_19153 Sequoiadendron giganteum HOM05D004071 ORTHO05D004501 1.9e-17 94.4 58 69.0
Gohir.A10G225466 Gossypium hirsutum HOM05D004071 ORTHO05D004501 1.7e-15 87.8 54 77.8
HanXRQChr02g0053871 Helianthus annuus HOM05D004071 ORTHO05D004501 3.3e-14 83.6 103 50.5
Cre02.g099650 Chlamydomonas reinhardtii HOM05D004071 ORTHO05D004501 9.6e-14 82.0 217 26.3
arahy.Tifrunner.gnm1.ann1.FI956K Arachis hypogaea HOM05D004071 ORTHO05D004501 1.6e-08 64.7 98 35.7
BcaC02g08620 Brassica carinata HOM05D004071 ORTHO05D004501 3.9e-07 60.1 38 78.9
CBR_g42155 Chara braunii HOM05D004071 ORTHO05D004501 9.6e-06 55.5 61 41.0


User provided reference genes

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