Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA232G0897 Erigeron canadensis HOM05D004833 ORTHO05D005671 8.7e-206 720.3 427 100.0
ECA234G1378 Erigeron canadensis HOM05D000038 ORTHO05D000423 9.5e-120 434.5 377 72.9
ECA232G1138 Erigeron canadensis HOM05D004833 ORTHO05D005671 4.4e-117 425.6 381 71.4
Lsat_1_v5_gn_4_144160 Lactuca sativa HOM05D004833 ORTHO05D005671 5.7e-40 169.5 435 32.9
HanXRQChr09g0257341 Helianthus annuus HOM05D004833 ORTHO05D005671 3.9e-33 146.7 318 37.4
DCAR_024234 Daucus carota HOM05D004833 ORTHO05D005671 3.8e-28 130.2 155 44.5
HanXRQChr05g0145861 Helianthus annuus HOM05D004833 ORTHO05D005671 1.9e-27 127.9 348 34.2
HanXRQChr11g0331421 Helianthus annuus HOM05D004833 ORTHO05D005671 1.9e-27 127.9 348 34.2
DCAR_028835 Daucus carota HOM05D004833 ORTHO05D005671 7.2e-27 125.9 166 44.0
MELO3C006459.2 Cucumis melo HOM05D004833 ORTHO05D005671 3.6e-26 123.6 148 45.3
CsaV3_3G012480 Cucumis sativus L. HOM05D004833 ORTHO05D005671 6.1e-26 122.9 151 44.4
CSS0034891 Camellia sinensis var. sinensis HOM05D004833 ORTHO05D005671 8.0e-26 122.5 374 35.3
RcHm_v2.0_Chr7g0224291 Rosa chinensis HOM05D004833 ORTHO05D005671 1.4e-25 121.7 160 45.6
Sc25g0004110 Simmondsia chinensis HOM05D004833 ORTHO05D005671 1.8e-25 121.3 146 47.9
Actinidia40079 Actinidia chinensis HOM05D004833 ORTHO05D005671 2.3e-25 120.9 152 46.1
ClCG05G004520 Citrullus lanatus HOM05D004833 ORTHO05D005671 3.0e-25 120.6 157 42.7
Dinv29897 Davidia involucrata HOM05D004833 ORTHO05D005671 3.0e-25 120.6 153 47.1
Thhalv10020728m.g Eutrema salsugineum HOM05D004833 ORTHO05D005671 3.0e-25 120.6 128 46.1
Peaxi162Scf00209g00118 Petunia axillaris HOM05D004833 ORTHO05D005671 3.0e-25 120.6 164 46.3
RcHm_v2.0_Chr7g0211851 Rosa chinensis HOM05D004833 ORTHO05D005671 3.0e-25 120.6 159 42.1
Nn4g25548 Nelumbo nucifera HOM05D004833 ORTHO05D005671 8.8e-25 119.0 106 53.8
Hma1.2p1_0310F.1_g120780 Hydrangea macrophylla HOM05D004833 ORTHO05D005671 2.0e-24 117.9 116 54.3
THA.LOC104808605 Tarenaya hassleriana HOM05D004833 ORTHO05D005671 2.6e-24 117.5 156 41.0
Eucgr.G02729 Eucalyptus grandis HOM05D004833 ORTHO05D005671 4.4e-24 116.7 112 53.6
MSTRG.24695 Avicennia marina HOM05D004833 ORTHO05D005671 5.7e-24 116.3 193 40.4
FAN17G0043 Fragaria x ananassa HOM05D004833 ORTHO05D005671 5.7e-24 116.3 161 46.6
Solyc08g078470.4 Solanum lycopersicum HOM05D004833 ORTHO05D005671 7.5e-24 115.9 145 47.6
Aa31LG9G2800 Aethionema arabicum HOM05D004833 ORTHO05D005671 9.8e-24 115.5 113 47.8
Lj6P658T33 Lonicera japonica HOM05D004833 ORTHO05D005671 9.8e-24 115.5 129 46.5
Sabra10G0033900 Salix brachista HOM05D004833 ORTHO05D005671 9.8e-24 115.5 108 49.1
Sopen08g026960 Solanum pennellii HOM05D004833 ORTHO05D005671 9.8e-24 115.5 145 46.9
HPP92_002726 Vanilla planifolia HOM05D004833 ORTHO05D005671 9.8e-24 115.5 104 51.9
FAN17G0464 Fragaria x ananassa HOM05D004833 ORTHO05D005671 1.3e-23 115.2 161 46.6
RcHm_v2.0_Chr4g0391131 Rosa chinensis HOM05D004833 ORTHO05D005671 1.3e-23 115.2 175 41.7
FAN12G1135 Fragaria x ananassa HOM05D004833 ORTHO05D005671 2.2e-23 114.4 161 45.3
FAN12G1996 Fragaria x ananassa HOM05D004833 ORTHO05D005671 2.2e-23 114.4 161 45.3
TAR362G1060 Trochodendron aralioides HOM05D004833 ORTHO05D005671 2.2e-23 114.4 151 45.0
BcaB04g21413 Brassica carinata HOM05D004833 ORTHO05D005671 2.8e-23 114.0 135 43.0
CAN.G1178.27 Capsicum annuum HOM05D004833 ORTHO05D005671 3.7e-23 113.6 162 45.1
FvH4_4g02980 Fragaria vesca HOM05D004833 ORTHO05D005671 3.7e-23 113.6 161 45.3
MD16G1211500 Malus domestica HOM05D004833 ORTHO05D005671 3.7e-23 113.6 101 54.5
Cfa008364 Carpinus fangiana HOM05D004833 ORTHO05D005671 6.3e-23 112.8 368 30.7
QL04p071625 Quercus lobata HOM05D004833 ORTHO05D005671 6.3e-23 112.8 135 45.9
Aqoxy4G02560 Aquilegia oxysepala HOM05D004833 ORTHO05D005671 8.3e-23 112.5 319 31.3
BcaC09g47698 Brassica carinata HOM05D004833 ORTHO05D005671 8.3e-23 112.5 349 27.8
FAN28G1505 Fragaria x ananassa HOM05D004833 ORTHO05D005671 8.3e-23 112.5 161 45.3
SalBow3G2302 Salvia bowleyana HOM05D004833 ORTHO05D005671 8.3e-23 112.5 123 48.8
Sp3g01440 Schrenkiella parvula HOM05D004833 ORTHO05D005671 8.3e-23 112.5 131 42.0
EL10Ac7g16793 Beta vulgaris HOM05D004833 ORTHO05D005671 1.1e-22 112.1 133 43.6
Psat7g116640 Pisum sativum HOM05D004833 ORTHO05D005671 1.1e-22 112.1 122 43.4
AT4G14490 Arabidopsis thaliana HOM05D004833 ORTHO05D005671 1.4e-22 111.7 103 49.5
BNapus_Darmor_BZH_scaffold_208p00080 Brassica napus HOM05D004833 ORTHO05D005671 1.4e-22 111.7 107 49.5
CARHR076370 Cardamine hirsuta HOM05D004833 ORTHO05D005671 1.4e-22 111.7 131 42.7
TAR633G1100 Trochodendron aralioides HOM05D004833 ORTHO05D005671 1.4e-22 111.7 138 45.7
HPP92_002667 Vanilla planifolia HOM05D004833 ORTHO05D005671 1.4e-22 111.7 153 41.2
Ah.15g090410 Amaranthus hybridus HOM05D004833 ORTHO05D005671 1.8e-22 111.3 130 44.6
Rhsim11G0181500 Rhododendron simsii HOM05D004833 ORTHO05D005671 1.8e-22 111.3 280 33.9
PGSC0003DMG400004768 Solanum tuberosum HOM05D004833 ORTHO05D005671 2.4e-22 110.9 145 45.5
BolC1t05907H Brassica oleracea HOM05D004833 ORTHO05D005671 3.1e-22 110.5 349 27.8
CANSAT78G0301 Cannabis sativa HOM05D004833 ORTHO05D005671 3.1e-22 110.5 336 31.8
Prupe.1G033600 Prunus persica HOM05D004833 ORTHO05D005671 3.1e-22 110.5 124 48.4
SGA_v2.0_scaffold308G48094 Striga asiatica HOM05D004833 ORTHO05D005671 3.1e-22 110.5 197 36.0
TPR.G14924 Trifolium pratense HOM05D004833 ORTHO05D005671 3.1e-22 110.5 101 51.5
HPP92_014115 Vanilla planifolia HOM05D004833 ORTHO05D005671 3.1e-22 110.5 162 37.7
Thecc.04G248100 Theobroma cacao HOM05D004833 ORTHO05D005671 4.1e-22 110.2 158 42.4
CiPaw.02G115600 Carya illinoinensis HOM05D004833 ORTHO05D005671 5.4e-22 109.8 159 42.1
Potri.010G074900 Populus trichocarpa HOM05D004833 ORTHO05D005671 5.4e-22 109.8 348 30.2
Carub.0003s0149 Capsella rubella HOM05D004833 ORTHO05D005671 7.0e-22 109.4 132 40.2
Cpa.g.sc44.108 Carica papaya HOM05D004833 ORTHO05D005671 7.0e-22 109.4 132 42.4
BcaC01g04551 Brassica carinata HOM05D004833 ORTHO05D005671 1.2e-21 108.6 336 29.8
C03p40050 Brassica napus HOM05D005209 ORTHO05D006188 1.2e-21 108.6 125 44.8
BolC3t16270H Brassica oleracea HOM05D005209 ORTHO05D006188 1.2e-21 108.6 125 44.8
BraA03t12461Z Brassica rapa HOM05D005209 ORTHO05D006188 1.2e-21 108.6 108 49.1
PGR004G1107 Punica granatum HOM05D004833 ORTHO05D005671 1.2e-21 108.6 332 30.1
BcaC05g30352 Brassica carinata HOM05D004833 ORTHO05D005671 1.6e-21 108.2 116 43.1
C09p75700 Brassica napus HOM05D004833 ORTHO05D005671 2.0e-21 107.8 116 43.1
Ciclev10004978m.g Citrus clementina HOM05D004833 ORTHO05D005671 2.0e-21 107.8 188 37.2
Medtr4g088235 Medicago truncatula HOM05D004833 ORTHO05D005671 2.0e-21 107.8 102 50.0
PSO210G7662 Papaver somniferum HOM05D004833 ORTHO05D005671 2.0e-21 107.8 128 46.1
Glyma.07G201900 Glycine max HOM05D004833 ORTHO05D005671 2.7e-21 107.5 102 49.0
Oeu002595.1 Olea europaea HOM05D004833 ORTHO05D005671 2.7e-21 107.5 321 30.8
PSO761G0588 Papaver somniferum HOM05D004833 ORTHO05D005671 2.7e-21 107.5 128 46.1
BraSC141t45625Z Brassica rapa HOM05D004833 ORTHO05D005671 3.5e-21 107.1 355 29.9
Migut.N00255 Erythranthe guttata HOM05D004833 ORTHO05D005671 4.5e-21 106.7 126 44.4
Sed0021810 Sechium edule HOM05D004833 ORTHO05D005671 4.5e-21 106.7 334 30.5
Aa31LG8G9600 Aethionema arabicum HOM05D004833 ORTHO05D005671 5.9e-21 106.3 138 39.9
arahy.Tifrunner.gnm1.ann1.DI6KST Arachis hypogaea HOM05D004833 ORTHO05D005671 5.9e-21 106.3 102 47.1
A03p32920 Brassica napus HOM05D004833 ORTHO05D005671 5.9e-21 106.3 108 48.1
Gohir.A02G036200 Gossypium hirsutum HOM05D004833 ORTHO05D005671 5.9e-21 106.3 123 46.3
Gorai.005G047200 Gossypium raimondii HOM05D004833 ORTHO05D005671 5.9e-21 106.3 123 47.2
AT3G02400 Arabidopsis thaliana HOM05D004833 ORTHO05D005671 1.0e-20 105.5 133 39.8
BraA05t23142Z Brassica rapa HOM05D004833 ORTHO05D005671 1.0e-20 105.5 348 26.7
COL.COLO4_15806 Corchorus olitorius HOM05D004833 ORTHO05D005671 1.0e-20 105.5 124 43.5
Gohir.D02G042900 Gossypium hirsutum HOM05D004833 ORTHO05D005671 1.0e-20 105.5 123 46.3
TWI53G1508 Tripterygium wilfordii HOM05D004833 ORTHO05D005671 1.0e-20 105.5 155 38.7
TWI53G1633 Tripterygium wilfordii HOM05D004833 ORTHO05D005671 1.0e-20 105.5 155 38.7
AL3G11690 Arabidopsis lyrata HOM05D004833 ORTHO05D005671 1.3e-20 105.1 133 40.6
QL06p016027 Quercus lobata HOM05D004833 ORTHO05D005671 1.3e-20 105.1 361 31.0
arahy.Tifrunner.gnm1.ann1.CY5RP0 Arachis hypogaea HOM05D004833 ORTHO05D005671 1.7e-20 104.8 102 46.1
BcaC01g04448 Brassica carinata HOM05D004833 ORTHO05D005671 1.7e-20 104.8 255 31.4
Ca_18598_v3 Cicer arietinum L. HOM05D004833 ORTHO05D005671 2.2e-20 104.4 101 50.5
Duzib151G1051 Durio zibethinus HOM05D004833 ORTHO05D005671 2.2e-20 104.4 104 47.1
Nitab4.5_0001381g0160 Nicotiana tabacum HOM05D004833 ORTHO05D005671 2.2e-20 104.4 145 42.8
Lj4g0009172 Lotus japonicus HOM05D004833 ORTHO05D005671 2.9e-20 104.0 114 47.4
Medtr8g069140 Medicago truncatula HOM05D004833 ORTHO05D005671 2.9e-20 104.0 101 48.5
Os03g0728500 Oryza sativa ssp. japonica HOM05D004833 ORTHO05D005671 2.9e-20 104.0 120 42.5
Carub.0007s2773 Capsella rubella HOM05D004833 ORTHO05D005671 3.8e-20 103.6 103 45.6
TWI09G0514 Tripterygium wilfordii HOM05D004833 ORTHO05D005671 5.0e-20 103.2 153 38.6
Duzib212G0317 Durio zibethinus HOM05D004833 ORTHO05D005671 6.5e-20 102.8 126 43.7
Manes.03G168000 Manihot esculenta HOM05D004833 ORTHO05D005671 6.5e-20 102.8 164 39.0
Lalb_Chr05g0218581 Lupinus albus HOM05D004833 ORTHO05D005671 8.5e-20 102.4 104 49.0
SHI08746 Sapria himalayana HOM05D004833 ORTHO05D005671 8.5e-20 102.4 339 31.6
Atru.chr4.2164 Acer truncatum HOM05D004833 ORTHO05D005671 2.5e-19 100.9 162 38.9
A05p45200 Brassica napus HOM05D004833 ORTHO05D005671 3.2e-19 100.5 338 29.3
MBI19_g03257_MAGBIO Magnolia biondii HOM05D004833 ORTHO05D005671 4.2e-19 100.1 345 32.5
Nitab4.5_0002289g0040 Nicotiana tabacum HOM05D004833 ORTHO05D005671 1.2e-18 98.6 296 31.1
Rhsim04G0155000 Rhododendron simsii HOM05D004833 ORTHO05D005671 1.6e-18 98.2 368 30.7
Ciclev10005174m.g Citrus clementina HOM05D004833 ORTHO05D005671 2.1e-18 97.8 329 30.1
unitig_52.g17411 Utricularia gibba HOM05D004833 ORTHO05D005671 2.1e-18 97.8 330 30.3
Lj4g0026393 Lotus japonicus HOM05D004833 ORTHO05D005671 6.1e-18 96.3 181 35.9
VMungo0251G0345 Vigna mungo HOM05D004833 ORTHO05D005671 1.0e-17 95.5 99 46.5
Medtr4g088240 Medicago truncatula HOM05D004833 ORTHO05D005671 1.4e-17 95.1 127 42.5
CDE09G0593 Ceratophyllum demersum HOM05D004833 ORTHO05D005671 3.0e-17 94.0 106 40.6
AL7G41650 Arabidopsis lyrata HOM05D004833 ORTHO05D005671 4.0e-17 93.6 358 26.5
CANSAT25G0083 Cannabis sativa HOM05D004833 ORTHO05D005671 4.0e-17 93.6 155 38.1
Glyma.13G174400 Glycine max HOM05D004833 ORTHO05D005671 5.2e-17 93.2 374 28.3
Zm00001eb056120 Zea mays HOM05D004833 ORTHO05D005671 6.8e-17 92.8 133 37.6
Phvul.002G328500 Phaseolus vulgaris HOM05D004833 ORTHO05D005671 8.8e-17 92.4 99 44.4
ATR0693G179 Amborella trichopoda HOM05D004833 ORTHO05D005671 1.2e-16 92.0 119 42.9
SEGI_17679 Sequoiadendron giganteum HOM05D004833 ORTHO05D005671 1.5e-16 91.7 97 43.3
Zm00001eb215540 Zea mays HOM05D004833 ORTHO05D005671 2.6e-16 90.9 128 38.3
MD13G1205500 Malus domestica HOM05D004833 ORTHO05D005671 4.4e-16 90.1 105 45.7
unitig_899.g14712 Utricularia gibba HOM05D004833 ORTHO05D005671 4.9e-15 86.7 302 29.1
Pp3c19_11080 Physcomitrium patens HOM05D004833 ORTHO05D005671 1.5e-11 75.1 106 37.7
CDE02G0054 Ceratophyllum demersum HOM05D004833 ORTHO05D005671 2.3e-09 67.8 167 29.9
CBR_g21751 Chara braunii HOM05D004833 ORTHO05D005671 3.0e-09 67.4 102 31.4
BolC5t35084H Brassica oleracea HOM05D004833 ORTHO05D005671 8.9e-09 65.9 53 56.6
SalBow5G1669 Salvia bowleyana HOM05D004938 ORTHO05D006035 1.2e-08 65.5 118 33.1
SalBow5G2418 Salvia bowleyana HOM05D004938 ORTHO05D006035 1.2e-08 65.5 118 33.1
AagrBONN_evm.TU.Sc2ySwM_368.3218 Anthoceros agrestis HOM05D004833 ORTHO05D005671 2.6e-08 64.3 114 31.6
Pp3c18_4140 Physcomitrium patens HOM05D004833 ORTHO05D005671 5.7e-08 63.2 89 37.1
Actinidia04469 Actinidia chinensis HOM05D004833 ORTHO05D005671 7.5e-08 62.8 40 70.0
Cre09.g402350 Chlamydomonas reinhardtii HOM05D004833 ORTHO05D005671 7.5e-08 62.8 107 34.6
Potri.008G149700 Populus trichocarpa HOM05D004938 ORTHO05D006035 9.8e-08 62.4 144 27.1
Phvul.002G234300 Phaseolus vulgaris HOM05D004833 ORTHO05D005671 2.2e-07 61.2 49 51.0
Thecc.04G226400 Theobroma cacao HOM05D004938 ORTHO05D006035 3.7e-07 60.5 145 26.9
Lj6C597G4 Lonicera japonica HOM05D000104 ORTHO05D006391 4.9e-07 60.1 120 28.3
Actinidia23495 Actinidia chinensis HOM05D004938 ORTHO05D006035 6.3e-07 59.7 122 29.5
ATR0626G035 Amborella trichopoda HOM05D004938 ORTHO05D006035 6.3e-07 59.7 113 31.9
Migut.N00168 Erythranthe guttata HOM05D004938 ORTHO05D006035 1.1e-06 58.9 122 30.3
MD16G1187600 Malus domestica HOM05D004938 ORTHO05D006035 1.4e-06 58.5 118 28.8
Rhsim04G0204400 Rhododendron simsii HOM05D004938 ORTHO05D006035 1.4e-06 58.5 96 33.3
Sc19g0004370 Simmondsia chinensis HOM05D004938 ORTHO05D006035 1.4e-06 58.5 150 27.3
COL.COLO4_05833 Corchorus olitorius HOM05D004938 ORTHO05D006035 1.8e-06 58.2 123 27.6
Pp3c22_2480 Physcomitrium patens HOM05D004938 ORTHO05D006035 1.8e-06 58.2 116 30.2
Atru.chr4.2523 Acer truncatum HOM05D004938 ORTHO05D006035 2.4e-06 57.8 139 27.3
MD13G1186700 Malus domestica HOM05D004938 ORTHO05D006035 2.4e-06 57.8 118 28.8
Prupe.1G154400 Prunus persica HOM05D004938 ORTHO05D006035 2.4e-06 57.8 118 28.0
THA.LOC104822301 Tarenaya hassleriana HOM05D004938 ORTHO05D006035 2.4e-06 57.8 110 32.7
Sed0014933 Sechium edule HOM05D004938 ORTHO05D006035 3.2e-06 57.4 119 30.3
CSS0042089 Camellia sinensis var. sinensis HOM05D004938 ORTHO05D006035 4.1e-06 57.0 122 28.7
CSS0044999 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D006391 4.1e-06 57.0 122 28.7
Cpa.g.sc147.28 Carica papaya HOM05D004938 ORTHO05D006035 5.4e-06 56.6 137 26.3
Cfa015608 Carpinus fangiana HOM05D006587 ORTHO05D006035 5.4e-06 56.6 139 25.9
MELO3C014494.2 Cucumis melo HOM05D004938 ORTHO05D006035 5.4e-06 56.6 118 28.8
THA.LOC104818812 Tarenaya hassleriana HOM05D004938 ORTHO05D006035 5.4e-06 56.6 119 27.7
CDE10G1250 Ceratophyllum demersum HOM05D004938 ORTHO05D006035 7.0e-06 56.2 122 26.2
Glyma.01G239700 Glycine max HOM05D004938 ORTHO05D006035 7.0e-06 56.2 118 27.1
Mapoly0067s0089 Marchantia polymorpha HOM05D004833 ORTHO05D005671 7.0e-06 56.2 112 33.9
PRCOL_00002026 Prasinoderma coloniale HOM05D004833 ORTHO05D005671 7.0e-06 56.2 111 34.2
RcHm_v2.0_Chr4g0417151 Rosa chinensis HOM05D004938 ORTHO05D006035 7.0e-06 56.2 132 27.3
SMO119G0313 Selaginella moellendorffii HOM05D004938 ORTHO05D006035 7.0e-06 56.2 112 27.7
SGA_v2.0_scaffold10G05111 Striga asiatica HOM05D004938 ORTHO05D006035 7.0e-06 56.2 127 33.9
Sabra08G0113800 Salix brachista HOM05D004938 ORTHO05D006035 9.2e-06 55.8 144 25.0
GSVIVG01017919001 Vitis vinifera HOM05D004938 ORTHO05D006035 9.2e-06 55.8 122 26.2


User provided reference genes

Program Settings