Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA232G0584 Erigeron canadensis HOM05D000561 ORTHO05D008162 1.4e-162 576.2 294 100.0
HanXRQChr09g0268001 Helianthus annuus HOM05D000561 ORTHO05D008162 1.7e-115 419.9 280 77.9
Lsat_1_v5_gn_4_124200 Lactuca sativa HOM05D000561 ORTHO05D008162 1.3e-112 410.2 295 74.2
HanXRQChr02g0038741 Helianthus annuus HOM05D000561 ORTHO05D008162 4.5e-105 385.2 284 70.8
Dinv39338 Davidia involucrata HOM05D000561 ORTHO05D008162 4.3e-103 378.6 278 69.8
Lsat_1_v5_gn_1_20480 Lactuca sativa HOM05D000561 ORTHO05D008162 1.2e-100 370.5 287 68.3
Duzib116G0222 Durio zibethinus HOM05D000561 ORTHO05D008162 4.4e-100 368.6 301 64.1
Hma1.2p1_0260F.1_g104740 Hydrangea macrophylla HOM05D000561 ORTHO05D008162 9.8e-100 367.5 292 66.8
TAR628G0509 Trochodendron aralioides HOM05D000561 ORTHO05D008162 1.7e-99 366.7 287 67.6
CSS0036187 Camellia sinensis var. sinensis HOM05D000561 ORTHO05D008162 2.4e-98 362.8 257 72.4
GSVIVG01009559001 Vitis vinifera HOM05D000561 ORTHO05D008162 4.1e-98 362.1 295 65.1
Actinidia22609 Actinidia chinensis HOM05D000561 ORTHO05D008162 7.0e-98 361.3 282 68.1
Atru.chr13.629 Acer truncatum HOM05D000561 ORTHO05D008162 1.2e-97 360.5 268 67.9
Atru.chr13.633 Acer truncatum HOM05D000561 ORTHO05D008162 1.2e-97 360.5 268 67.9
vmacro21557 Vaccinium macrocarpon HOM05D000561 ORTHO05D008162 2.0e-97 359.8 314 62.7
TAR625G0340 Trochodendron aralioides HOM05D000561 ORTHO05D008162 3.5e-97 359.0 287 66.2
Migut.C00604 Erythranthe guttata HOM05D000561 ORTHO05D008162 7.8e-97 357.8 266 68.4
Rhsim06G0046600 Rhododendron simsii HOM05D000561 ORTHO05D008162 3.0e-96 355.9 286 67.1
Nn5g30201 Nelumbo nucifera HOM05D000561 ORTHO05D000514 5.0e-96 355.1 260 69.6
Gohir.D05G203500 Gossypium hirsutum HOM05D000561 ORTHO05D008162 8.6e-96 354.4 304 62.5
PSO675G5921 Papaver somniferum HOM05D000561 ORTHO05D008162 1.9e-95 353.2 274 65.7
Sed0001510 Sechium edule HOM05D000561 ORTHO05D008162 1.9e-95 353.2 299 61.9
Prupe.1G440800 Prunus persica HOM05D000561 ORTHO05D008162 2.5e-95 352.8 275 68.4
CAN.G371.47 Capsicum annuum HOM05D000561 ORTHO05D008162 3.3e-95 352.4 257 68.9
DCAR_019467 Daucus carota HOM05D000561 ORTHO05D008162 5.6e-95 351.7 297 62.3
PSO541G5839 Papaver somniferum HOM05D000561 ORTHO05D008162 2.8e-94 349.4 274 64.6
Gohir.A05G200200 Gossypium hirsutum HOM05D000561 ORTHO05D008162 3.6e-94 349.0 304 62.5
RcHm_v2.0_Chr6g0307161 Rosa chinensis HOM05D000561 ORTHO05D008162 3.6e-94 349.0 275 65.8
Solyc04g079320.4 Solanum lycopersicum HOM05D000561 ORTHO05D008162 3.6e-94 349.0 258 68.6
Sopen04g032930 Solanum pennellii HOM05D000561 ORTHO05D008162 3.6e-94 349.0 258 68.6
Duzib093G1567 Durio zibethinus HOM05D000561 ORTHO05D008162 4.7e-94 348.6 258 67.4
Ciclev10001965m.g Citrus clementina HOM05D000561 ORTHO05D008162 6.2e-94 348.2 302 61.9
Cc10_g03990 Coffea canephora HOM05D000561 ORTHO05D008162 6.2e-94 348.2 300 62.0
Gorai.009G209500 Gossypium raimondii HOM05D000561 ORTHO05D008162 6.2e-94 348.2 305 62.0
MD15G1087100 Malus domestica HOM05D000561 ORTHO05D008162 1.2e-92 344.0 253 67.2
MSTRG.1332 Avicennia marina HOM05D000561 ORTHO05D008162 3.4e-92 342.4 283 62.2
Potri.014G034700 Populus trichocarpa HOM05D000561 ORTHO05D008162 4.4e-92 342.0 272 64.7
MD08G1106500 Malus domestica HOM05D000561 ORTHO05D008162 1.3e-91 340.5 284 63.0
Nitab4.5_0005549g0040 Nicotiana tabacum HOM05D000561 ORTHO05D008162 2.2e-91 339.7 244 70.5
Nitab4.5_0000068g0440 Nicotiana tabacum HOM05D000561 ORTHO05D008162 1.4e-90 337.0 244 69.7
QL02p005893 Quercus lobata HOM05D000561 ORTHO05D008162 1.4e-90 337.0 259 66.4
Thecc.08G013400 Theobroma cacao HOM05D000561 ORTHO05D008162 1.9e-90 336.7 266 66.9
MELO3C010892.2 Cucumis melo HOM05D000561 ORTHO05D008162 3.2e-90 335.9 308 59.1
CsaV3_2G028140 Cucumis sativus L. HOM05D000561 ORTHO05D008162 3.2e-90 335.9 248 68.1
Zm00001eb006450 Zea mays HOM05D000561 ORTHO05D008162 3.2e-90 335.9 276 61.6
CiPaw.16G047800 Carya illinoinensis HOM05D000561 ORTHO05D008162 4.1e-90 335.5 275 64.0
FAN27G1876 Fragaria x ananassa HOM05D000561 ORTHO05D008162 9.2e-90 334.3 259 66.4
TWI56G0230 Tripterygium wilfordii HOM05D000561 ORTHO05D008162 9.2e-90 334.3 277 64.6
ClCG08G015630 Citrullus lanatus HOM05D000561 ORTHO05D008162 1.6e-89 333.6 253 66.4
Manes.05G170800 Manihot esculenta HOM05D000561 ORTHO05D008162 2.0e-89 333.2 295 63.1
Lalb_Chr08g0245641 Lupinus albus HOM05D000561 ORTHO05D008162 2.7e-89 332.8 301 59.8
Os03g0186100 Oryza sativa ssp. japonica HOM05D000561 ORTHO05D008162 2.7e-89 332.8 291 58.8
COL.COLO4_26457 Corchorus olitorius HOM05D000561 ORTHO05D008162 1.7e-88 330.1 228 71.1
SGA_v2.0_scaffold71G24043 Striga asiatica HOM05D000561 ORTHO05D008162 1.7e-88 330.1 264 66.3
THA.LOC104803685 Tarenaya hassleriana HOM05D000561 ORTHO05D008162 1.7e-88 330.1 256 65.2
TPR.G10521 Trifolium pratense HOM05D000561 ORTHO05D008162 1.5e-87 327.0 284 58.8
arahy.Tifrunner.gnm1.ann1.YYC1CT Arachis hypogaea HOM05D000561 ORTHO05D008162 7.3e-87 324.7 266 63.2
Carub.0003s2738 Capsella rubella HOM05D000561 ORTHO05D008162 9.5e-87 324.3 248 62.9
MBI06_g08185_MAGBIO Magnolia biondii HOM05D000561 ORTHO05D008162 9.5e-87 324.3 301 57.1
FvH4_2g34880 Fragaria vesca HOM05D000561 ORTHO05D008162 1.6e-86 323.6 276 62.7
Peaxi162Scf00566g00219 Petunia axillaris HOM05D000561 ORTHO05D008162 1.6e-86 323.6 235 71.9
Psat5g044440 Pisum sativum HOM05D000561 ORTHO05D008162 1.6e-86 323.6 267 60.3
BolC8t51383H Brassica oleracea HOM05D000561 ORTHO05D008162 2.1e-86 323.2 285 60.0
Lj1g0015016 Lotus japonicus HOM05D000561 ORTHO05D008162 2.1e-86 323.2 258 62.4
Medtr3g101350 Medicago truncatula HOM05D000561 ORTHO05D008162 2.1e-86 323.2 276 60.9
Migut.O00512 Erythranthe guttata HOM05D000561 ORTHO05D008162 3.6e-86 322.4 335 54.3
A09p55150 Brassica napus HOM05D000561 ORTHO05D008162 6.2e-86 321.6 276 59.4
Sabra14G0024600 Salix brachista HOM05D000561 ORTHO05D008162 6.2e-86 321.6 260 65.8
Sp4g07760 Schrenkiella parvula HOM05D000561 ORTHO05D008162 8.1e-86 321.2 248 63.3
BraA09t40923Z Brassica rapa HOM05D000561 ORTHO05D008162 1.4e-85 320.5 276 59.8
AT2G26540 Arabidopsis thaliana HOM05D000561 ORTHO05D008162 2.3e-85 319.7 246 63.0
Aqoxy6G01386 Aquilegia oxysepala HOM05D000561 ORTHO05D008162 4.0e-85 318.9 253 63.2
AL4G19400 Arabidopsis lyrata HOM05D000561 ORTHO05D008162 5.2e-85 318.5 293 56.7
Haze_17567 Corylus avellana HOM05D000561 ORTHO05D008162 5.2e-85 318.5 268 62.7
SalBow7G2378 Salvia bowleyana HOM05D000561 ORTHO05D008162 5.2e-85 318.5 305 55.4
CARHR050650 Cardamine hirsuta HOM05D000561 ORTHO05D008162 1.2e-84 317.4 301 54.2
Phvul.009G063100 Phaseolus vulgaris HOM05D000561 ORTHO05D008162 2.0e-84 316.6 257 62.3
C08p38080 Brassica napus HOM05D000561 ORTHO05D008162 2.6e-84 316.2 284 59.2
BcaC07g40815 Brassica carinata HOM05D000561 ORTHO05D008162 7.5e-84 314.7 283 59.0
Aa31LG10G9880 Aethionema arabicum HOM05D000561 ORTHO05D008162 1.3e-83 313.9 268 59.3
HPP92_011186 Vanilla planifolia HOM05D000561 ORTHO05D008162 1.7e-83 313.5 294 57.1
BcaB08g35302 Brassica carinata HOM05D000561 ORTHO05D008162 2.9e-83 312.8 292 56.5
CDE06G2652 Ceratophyllum demersum HOM05D000561 ORTHO05D008162 2.9e-83 312.8 268 59.0
Manes.18G034000 Manihot esculenta HOM05D000561 ORTHO05D008162 2.1e-81 306.6 262 64.9
Glyma.06G037300 Glycine max HOM05D000561 ORTHO05D008162 3.5e-81 305.8 250 62.8
PGR031G3300 Punica granatum HOM05D000561 ORTHO05D008162 7.8e-81 304.7 260 61.5
Eucgr.F02370 Eucalyptus grandis HOM05D000561 ORTHO05D008162 2.3e-80 303.1 229 67.7
Sabra02G0100300 Salix brachista HOM05D000561 ORTHO05D008162 6.6e-80 301.6 244 66.4
EL10Ac1g01805 Beta vulgaris HOM05D000561 ORTHO05D008162 5.6e-79 298.5 288 59.4
Ca_15966_v3 Cicer arietinum L. HOM05D000561 ORTHO05D008162 5.6e-79 298.5 280 56.8
Thhalv10001252m.g Eutrema salsugineum HOM05D000561 ORTHO05D008162 2.3e-77 293.1 248 60.9
Pp3c9_18350 Physcomitrium patens HOM05D000561 ORTHO05D008162 7.6e-76 288.1 265 54.3
ATR0087G004 Amborella trichopoda HOM05D000561 ORTHO05D008162 1.9e-74 283.5 227 61.7
ECA247G1201 Erigeron canadensis HOM05D000561 ORTHO05D000514 3.2e-74 282.7 200 70.5
FAN20G2490 Fragaria x ananassa HOM05D000561 ORTHO05D008162 4.1e-74 282.3 329 50.2
Hund26617 Selenicereus undatus HOM05D000561 ORTHO05D008162 1.6e-70 270.4 419 41.5
AagrBONN_evm.TU.Sc2ySwM_228.1283 Anthoceros agrestis HOM05D000561 ORTHO05D008162 1.1e-69 267.7 245 53.5
Lj4A51T47 Lonicera japonica HOM05D000561 ORTHO05D008162 1.1e-69 267.7 199 67.8
Mapoly0101s0072 Marchantia polymorpha HOM05D000561 ORTHO05D008162 9.9e-68 261.2 253 53.4
VMungo1309G1588 Vigna mungo HOM05D000561 ORTHO05D008162 8.4e-67 258.1 232 57.8
Ah.06g192790 Amaranthus hybridus HOM05D000561 ORTHO05D008162 3.5e-65 252.7 322 47.8
AUR62022458 Chenopodium quinoa HOM05D000561 ORTHO05D008162 3.9e-64 249.2 293 52.6
Cpa.g.sc64.2 Carica papaya HOM05D000561 ORTHO05D008162 1.1e-63 247.7 186 65.6
SMO367G0032 Selaginella moellendorffii HOM05D000561 ORTHO05D008162 3.6e-62 242.7 236 54.2
SEGI_40608 Sequoiadendron giganteum HOM05D000561 ORTHO05D008162 1.1e-61 241.1 214 57.5
Carub.0004s0671 Capsella rubella HOM05D000561 ORTHO05D008162 1.4e-61 240.7 276 50.4
Glyma.04G037000 Glycine max HOM05D000561 ORTHO05D008162 4.5e-60 235.7 196 63.8
SHI08313 Sapria himalayana HOM05D000561 ORTHO05D008162 8.4e-59 231.5 249 51.0
CBR_g12178 Chara braunii HOM05D000561 ORTHO05D008162 9.3e-58 228.0 270 45.6
Sc26g0003980 Simmondsia chinensis HOM05D000561 ORTHO05D008162 6.2e-54 215.3 193 63.2
AUR62040067 Chenopodium quinoa HOM05D000561 ORTHO05D008162 2.4e-50 203.4 296 45.9
Cre09.g409100 Chlamydomonas reinhardtii HOM05D000561 ORTHO05D008162 5.5e-50 202.2 253 45.8
Lsat_1_v5_gn_2_45600 Lactuca sativa HOM05D000561 ORTHO05D008162 3.5e-49 199.5 235 50.6
Migut.N02692 Erythranthe guttata HOM05D000561 ORTHO05D008162 4.6e-49 199.1 194 57.2
CDE10G0258 Ceratophyllum demersum HOM05D000561 ORTHO05D008162 5.6e-47 192.2 170 58.2
arahy.Tifrunner.gnm1.ann1.96H4RR Arachis hypogaea HOM05D000561 ORTHO05D008162 5.3e-45 185.7 152 64.5
MCO15G161 Micromonas commoda HOM05D000561 ORTHO05D008162 1.5e-44 184.1 245 44.5
unitig_32.g11128 Utricularia gibba HOM05D000561 ORTHO05D008162 7.6e-44 181.8 142 59.2
PRCOL_00005348 Prasinoderma coloniale HOM05D000561 ORTHO05D008162 4.2e-42 176.0 249 42.2
Lsat_1_v5_gn_5_145360 Lactuca sativa HOM05D000561 ORTHO05D008162 3.7e-38 162.9 163 56.4
SGA_v2.0_scaffold217G42442 Striga asiatica HOM05D000561 ORTHO05D008162 2.9e-35 153.3 119 67.2
Lsat_1_v5_gn_5_39421 Lactuca sativa HOM05D000487 ORTHO05D048384 6.1e-25 119.0 83 67.5
SGA_v2.0_scaffold217G42441 Striga asiatica HOM05D000561 ORTHO05D008162 2.8e-22 110.2 79 65.8
Lsat_1_v5_gn_9_32780 Lactuca sativa HOM05D000379 ORTHO05D024309 4.7e-09 66.2 45 66.7


User provided reference genes

Program Settings