Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA232G0284 Erigeron canadensis HOM05D004802 ORTHO05D005591 2.0e-74 282.3 144 100.0
Lsat_1_v5_gn_5_17000 Lactuca sativa HOM05D004802 ORTHO05D005591 4.8e-68 261.2 144 91.0
HanXRQChr05g0155531 Helianthus annuus HOM05D004802 ORTHO05D005591 4.1e-67 258.1 144 91.0
CsaV3_1G001710 Cucumis sativus L. HOM05D004802 ORTHO05D005591 5.5e-64 247.7 144 85.4
Migut.D01783 Erythranthe guttata HOM05D004802 ORTHO05D005591 9.5e-64 246.9 144 86.8
Cfa019082 Carpinus fangiana HOM05D004802 ORTHO05D005591 1.0e-62 243.4 144 86.8
DCAR_016496 Daucus carota HOM05D004802 ORTHO05D005591 1.0e-62 243.4 144 86.1
TAR362G1012 Trochodendron aralioides HOM05D004802 ORTHO05D005591 4.0e-62 241.5 144 84.0
DCAR_021562 Daucus carota HOM05D004802 ORTHO05D005591 5.2e-62 241.1 144 84.0
MSTRG.23103 Avicennia marina HOM05D004802 ORTHO05D005591 2.0e-61 239.2 144 84.7
CSS0033619 Camellia sinensis var. sinensis HOM05D004802 ORTHO05D005591 2.0e-61 239.2 144 81.9
Cpa.g.sc110.33 Carica papaya HOM05D004802 ORTHO05D005591 2.0e-61 239.2 144 82.6
GSVIVG01007807001 Vitis vinifera HOM05D004802 ORTHO05D005591 2.0e-61 239.2 144 83.3
ECA246G1319 Erigeron canadensis HOM05D004802 ORTHO05D005591 2.6e-61 238.8 165 77.0
Hma1.2p1_0483F.1_g162710 Hydrangea macrophylla HOM05D004802 ORTHO05D005591 3.4e-61 238.4 144 85.4
Eucgr.B00348 Eucalyptus grandis HOM05D004802 ORTHO05D005591 4.4e-61 238.0 146 82.9
Sed0010100 Sechium edule HOM05D004802 ORTHO05D005591 4.4e-61 238.0 144 81.9
SGA_v2.0_scaffold114G31844 Striga asiatica HOM05D004802 ORTHO05D005591 4.4e-61 238.0 144 84.7
Potri.014G111100 Populus trichocarpa HOM05D004802 ORTHO05D005591 5.7e-61 237.7 144 84.7
Sc12g0005500 Simmondsia chinensis HOM05D004802 ORTHO05D005591 7.5e-61 237.3 144 80.6
vmacro16596 Vaccinium macrocarpon HOM05D004802 ORTHO05D005591 9.8e-61 236.9 144 82.6
PGR083G1798 Punica granatum HOM05D004802 ORTHO05D005591 3.7e-60 235.0 144 83.3
CANSAT80G2080 Cannabis sativa HOM05D004802 ORTHO05D005591 2.4e-59 232.3 144 81.9
Sp1g06517 Schrenkiella parvula HOM05D004802 ORTHO05D005591 4.1e-59 231.5 144 79.2
Glyma.04G171700 Glycine max HOM05D004802 ORTHO05D005591 5.4e-59 231.1 144 80.6
Rhsim12G0162600 Rhododendron simsii HOM05D004802 ORTHO05D005591 5.4e-59 231.1 144 79.9
TWI32G0003 Tripterygium wilfordii HOM05D004802 ORTHO05D005591 5.4e-59 231.1 144 83.3
MD14G1184900 Malus domestica HOM05D004802 ORTHO05D005591 7.0e-59 230.7 142 83.8
THA.LOC104818227 Tarenaya hassleriana HOM05D004802 ORTHO05D005591 7.0e-59 230.7 146 79.5
CARHR007640 Cardamine hirsuta HOM05D004802 ORTHO05D005591 1.2e-58 229.9 144 77.8
HanXRQChr05g0163301 Helianthus annuus HOM05D004802 ORTHO05D005591 1.2e-58 229.9 147 85.0
HanXRQChr05g0163571 Helianthus annuus HOM05D004802 ORTHO05D005591 1.2e-58 229.9 147 85.0
Actinidia34948 Actinidia chinensis HOM05D004802 ORTHO05D005591 1.6e-58 229.6 133 85.7
AL1G18110 Arabidopsis lyrata HOM05D004802 ORTHO05D005591 2.0e-58 229.2 144 77.8
BcaC07g41973 Brassica carinata HOM05D004802 ORTHO05D005591 2.7e-58 228.8 148 78.4
C08p50320 Brassica napus HOM05D004802 ORTHO05D005591 2.7e-58 228.8 148 78.4
BolC8t52561H Brassica oleracea HOM05D004802 ORTHO05D005591 2.7e-58 228.8 148 78.4
Glyma.06G192200 Glycine max HOM05D004802 ORTHO05D005591 3.5e-58 228.4 145 82.1
CDE01G0824 Ceratophyllum demersum HOM05D004802 ORTHO05D005591 4.5e-58 228.0 145 80.7
Manes.12G158200 Manihot esculenta HOM05D004802 ORTHO05D005591 4.5e-58 228.0 144 81.2
Prupe.5G177600 Prunus persica HOM05D004802 ORTHO05D005591 5.9e-58 227.6 144 81.9
unitig_27.g24928 Utricularia gibba HOM05D004802 ORTHO05D005591 1.0e-57 226.9 144 79.2
Dinv41117 Davidia involucrata HOM05D001600 ORTHO05D001502 1.3e-57 226.5 131 87.0
Lalb_Chr23g0265291 Lupinus albus HOM05D004802 ORTHO05D005591 1.3e-57 226.5 150 78.7
Nitab4.5_0000499g0020 Nicotiana tabacum HOM05D004802 ORTHO05D005591 1.7e-57 226.1 144 77.8
MBI19_g12136_MAGBIO Magnolia biondii HOM05D004802 ORTHO05D005591 2.3e-57 225.7 144 79.9
RcHm_v2.0_Chr7g0179521 Rosa chinensis HOM05D004802 ORTHO05D005591 2.3e-57 225.7 144 81.2
Aqoxy5G00387 Aquilegia oxysepala HOM05D004802 ORTHO05D005591 2.9e-57 225.3 144 79.2
A09p66160 Brassica napus HOM05D004802 ORTHO05D005591 2.9e-57 225.3 144 78.5
BraA09t41954Z Brassica rapa HOM05D004802 ORTHO05D005591 2.9e-57 225.3 144 78.5
ATR0796G060 Amborella trichopoda HOM05D004802 ORTHO05D005591 3.8e-57 224.9 144 77.8
BolC5t29353H Brassica oleracea HOM05D000129 ORTHO05D005591 3.8e-57 224.9 145 77.2
Actinidia19087 Actinidia chinensis HOM05D004802 ORTHO05D005591 6.6e-57 224.2 133 85.7
Oeu026523.1 Olea europaea HOM05D004802 ORTHO05D005591 6.6e-57 224.2 145 80.0
LjContig00081g0027263 Lotus japonicus HOM05D004802 ORTHO05D005591 8.6e-57 223.8 144 79.2
Sc16g0001640 Simmondsia chinensis HOM05D004802 ORTHO05D005591 8.6e-57 223.8 145 79.3
TWI75G1644 Tripterygium wilfordii HOM05D004802 ORTHO05D005591 8.6e-57 223.8 144 81.9
MBI18_g21823_MAGBIO Magnolia biondii HOM05D004802 ORTHO05D005591 1.1e-56 223.4 144 79.2
SalBow2G1273 Salvia bowleyana HOM05D004802 ORTHO05D005591 1.1e-56 223.4 145 80.7
BraA06t23701Z Brassica rapa HOM05D004802 ORTHO05D005591 1.5e-56 223.0 145 76.6
Thecc.03G006700 Theobroma cacao HOM05D004802 ORTHO05D005591 1.5e-56 223.0 145 82.1
Solyc03g114050.3 Solanum lycopersicum HOM05D004802 ORTHO05D005591 1.9e-56 222.6 144 79.2
Sopen03g033100 Solanum pennellii HOM05D004802 ORTHO05D005591 1.9e-56 222.6 144 79.2
Carub.0005s0629 Capsella rubella HOM05D004802 ORTHO05D005591 3.3e-56 221.9 145 75.9
AUR62025410 Chenopodium quinoa HOM05D004802 ORTHO05D005591 3.3e-56 221.9 145 80.0
QL03p066954 Quercus lobata HOM05D004802 ORTHO05D005591 3.3e-56 221.9 143 79.0
HPP92_014441 Vanilla planifolia HOM05D004802 ORTHO05D005591 3.3e-56 221.9 144 77.1
arahy.Tifrunner.gnm1.ann1.H02ACK Arachis hypogaea HOM05D004802 ORTHO05D005591 4.3e-56 221.5 147 77.6
arahy.Tifrunner.gnm1.ann1.J5PS4T Arachis hypogaea HOM05D004802 ORTHO05D005591 5.6e-56 221.1 147 76.9
AUR62008830 Chenopodium quinoa HOM05D004802 ORTHO05D005591 7.3e-56 220.7 145 79.3
THA.LOC104821462 Tarenaya hassleriana HOM05D004802 ORTHO05D005591 7.3e-56 220.7 146 76.7
Aa31LG3G15940 Aethionema arabicum HOM05D004802 ORTHO05D005591 2.1e-55 219.2 146 76.0
AT1G07830 Arabidopsis thaliana HOM05D004802 ORTHO05D005591 2.1e-55 219.2 145 75.9
Duzib068G0850 Durio zibethinus HOM05D004802 ORTHO05D005591 2.8e-55 218.8 148 79.7
Potri.002G185800 Populus trichocarpa HOM05D004802 ORTHO05D005591 2.8e-55 218.8 145 77.2
BcaB02g06722 Brassica carinata HOM05D004802 ORTHO05D005591 3.6e-55 218.4 147 74.1
Cpa.g.sc170.28 Carica papaya HOM05D004802 ORTHO05D005591 4.7e-55 218.0 133 82.0
PSO170G0191 Papaver somniferum HOM05D004802 ORTHO05D005591 4.7e-55 218.0 148 75.0
Peaxi162Scf00689g00332 Petunia axillaris HOM05D004802 ORTHO05D005591 6.1e-55 217.6 144 78.5
VMungo1309G2385 Vigna mungo HOM05D004802 ORTHO05D005591 6.1e-55 217.6 144 77.1
C05p05910 Brassica napus HOM05D005594 ORTHO05D006403 8.0e-55 217.2 140 77.9
Phvul.009G188900 Phaseolus vulgaris HOM05D004802 ORTHO05D005591 1.0e-54 216.9 144 77.1
Hund18328 Selenicereus undatus HOM05D004802 ORTHO05D005591 1.8e-54 216.1 140 79.3
Aqoxy3G02494 Aquilegia oxysepala HOM05D004802 ORTHO05D005591 3.0e-54 215.3 145 77.2
BcaC07g42500 Brassica carinata HOM05D004802 ORTHO05D005591 3.0e-54 215.3 147 74.1
Cc00_g03600 Coffea canephora HOM05D004802 ORTHO05D005591 3.0e-54 215.3 147 75.5
Psat2g170440 Pisum sativum HOM05D004802 ORTHO05D005591 3.0e-54 215.3 144 75.7
Manes.15G185900 Manihot esculenta HOM05D004802 ORTHO05D005591 4.0e-54 214.9 144 78.5
PGSC0003DMG400024483 Solanum tuberosum HOM05D004802 ORTHO05D005591 4.0e-54 214.9 144 76.4
TPR.G6374 Trifolium pratense HOM05D004802 ORTHO05D005591 4.0e-54 214.9 144 77.1
TPR.G20968 Trifolium pratense HOM05D004802 ORTHO05D005591 5.2e-54 214.5 144 77.1
Ah.08g213760 Amaranthus hybridus HOM05D004802 ORTHO05D005591 6.8e-54 214.2 144 75.0
EL10Ac7g17734 Beta vulgaris HOM05D004802 ORTHO05D005591 6.8e-54 214.2 144 77.1
COL.COLO4_24762 Corchorus olitorius HOM05D004802 ORTHO05D005591 6.8e-54 214.2 145 79.3
Atru.chr9.2421 Acer truncatum HOM05D004802 ORTHO05D005591 8.9e-54 213.8 152 73.0
MELO3C017111.2 Cucumis melo HOM05D004802 ORTHO05D005591 2.6e-53 212.2 220 55.9
Thhalv10009035m.g Eutrema salsugineum HOM05D004802 ORTHO05D005591 2.6e-53 212.2 145 74.5
Gohir.A12G276300 Gossypium hirsutum HOM05D004802 ORTHO05D005591 3.4e-53 211.8 147 76.9
Gorai.008G297400 Gossypium raimondii HOM05D004802 ORTHO05D005591 3.4e-53 211.8 147 76.9
PSO782G1633 Papaver somniferum HOM05D004802 ORTHO05D005591 3.4e-53 211.8 148 72.3
FvH4_5g16620 Fragaria vesca HOM05D004802 ORTHO05D005591 5.8e-53 211.1 144 78.5
Gohir.D12G276900 Gossypium hirsutum HOM05D004802 ORTHO05D005591 1.3e-52 209.9 147 76.2
MD06G1178500 Malus domestica HOM05D004802 ORTHO05D005591 1.3e-52 209.9 113 91.2
FAN13G0264 Fragaria x ananassa HOM05D004802 ORTHO05D005591 1.7e-52 209.5 144 75.7
FAN18G4009 Fragaria x ananassa HOM05D004802 ORTHO05D005591 1.7e-52 209.5 144 77.8
Thhalv10014955m.g Eutrema salsugineum HOM05D004802 ORTHO05D005591 2.2e-52 209.1 146 73.3
Ciclev10022742m.g Citrus clementina HOM05D004802 ORTHO05D005591 2.9e-52 208.8 145 76.6
Aqoxy3G01788 Aquilegia oxysepala HOM05D004802 ORTHO05D005591 6.4e-52 207.6 146 74.7
arahy.Tifrunner.gnm1.ann1.RYE93B Arachis hypogaea HOM05D004802 ORTHO05D005591 3.2e-51 205.3 170 65.9
Ca_06425_v3 Cicer arietinum L. HOM05D000308 ORTHO05D000194 3.2e-51 205.3 145 73.1
FAN08G2523 Fragaria x ananassa HOM05D004802 ORTHO05D005591 3.2e-51 205.3 142 77.5
Hma1.2p1_2640F.1_g325880 Hydrangea macrophylla HOM05D004802 ORTHO05D005591 2.7e-50 202.2 116 84.5
Medtr5g015850 Medicago truncatula HOM05D004802 ORTHO05D005591 2.7e-50 202.2 144 75.0
SEGI_23384 Sequoiadendron giganteum HOM05D004802 ORTHO05D005591 3.5e-50 201.8 144 73.6
Zm00001eb378540 Zea mays HOM05D004802 ORTHO05D005591 4.6e-50 201.4 143 72.7
Peaxi162Scf00017g02344 Petunia axillaris HOM05D004802 ORTHO05D005591 7.8e-50 200.7 145 72.4
Nitab4.5_0001422g0100 Nicotiana tabacum HOM05D004802 ORTHO05D005591 1.7e-49 199.5 117 82.9
Rhsim08G0169000 Rhododendron simsii HOM05D004802 ORTHO05D005591 6.6e-49 197.6 175 62.3
Dinv25814 Davidia involucrata HOM05D004802 ORTHO05D005591 5.6e-48 194.5 109 85.3
Os06g0128500 Oryza sativa ssp. japonica HOM05D004802 ORTHO05D005591 7.3e-48 194.1 143 69.9
FAN04G1836 Fragaria x ananassa HOM05D004802 ORTHO05D005591 1.8e-46 189.5 113 82.3
Nitab4.5_0008768g0020 Nicotiana tabacum HOM05D004802 ORTHO05D005591 3.7e-44 181.8 205 51.7
CiPaw.11G030400 Carya illinoinensis HOM05D004802 ORTHO05D005591 8.3e-44 180.6 108 86.1
Haze_07452 Corylus avellana HOM05D004802 ORTHO05D005591 9.2e-43 177.2 110 81.8
ClCG06G016810 Citrullus lanatus HOM05D004802 ORTHO05D005591 8.6e-41 170.6 92 89.1
QL10p013461 Quercus lobata HOM05D004802 ORTHO05D005591 1.5e-40 169.9 95 87.4
RcHm_v2.0_Chr3g0484411 Rosa chinensis HOM05D004802 ORTHO05D005591 1.5e-40 169.9 90 91.1
Cc00_g07690 Coffea canephora HOM05D004802 ORTHO05D005591 3.3e-40 168.7 109 76.1
QL03p067058 Quercus lobata HOM05D004802 ORTHO05D005591 1.6e-39 166.4 88 89.8
Nn2g12605 Nelumbo nucifera HOM05D004802 ORTHO05D005591 3.2e-35 152.1 98 76.5
Pp3c17_20320 Physcomitrium patens HOM05D004802 ORTHO05D005591 8.6e-33 144.1 134 55.2
Mapoly0009s0030 Marchantia polymorpha HOM05D004802 ORTHO05D005591 7.3e-32 141.0 108 63.9
Nitab4.5_0000003g0430 Nicotiana tabacum HOM05D004802 ORTHO05D005591 1.8e-30 136.3 146 55.5
Cc00_g30360 Coffea canephora HOM05D004802 ORTHO05D005591 2.4e-30 136.0 112 64.3
CBR_g30055 Chara braunii HOM05D004802 ORTHO05D005591 9.2e-27 124.0 108 59.3
RcHm_v2.0_Chr3g0484341 Rosa chinensis HOM05D004802 ORTHO05D005591 3.9e-25 118.6 63 93.7
Hma1.2p1_0107F.1_g051480 Hydrangea macrophylla HOM05D004802 ORTHO05D005591 1.1e-22 110.5 60 90.0
SHI01132 Sapria himalayana HOM05D004802 ORTHO05D005591 1.7e-20 103.2 89 60.7
SMO228G0088 Selaginella moellendorffii HOM05D004802 ORTHO05D005591 1.7e-20 103.2 86 54.7
AagrBONN_evm.TU.Sc2ySwM_368.3252 Anthoceros agrestis HOM05D004802 ORTHO05D005591 8.4e-20 100.9 73 64.4
A06p04970 Brassica napus HOM05D004802 ORTHO05D005591 1.4e-14 83.6 113 44.2
Haze_26898 Corylus avellana HOM05D004802 ORTHO05D005591 1.8e-14 83.2 115 42.6
MCO15G004 Micromonas commoda HOM05D004802 ORTHO05D005591 6.9e-14 81.3 122 40.2
CSS0004783 Camellia sinensis var. sinensis HOM05D004802 ORTHO05D005591 2.2e-12 76.3 59 64.4
Pp3c14_16960 Physcomitrium patens HOM05D004802 ORTHO05D005591 2.9e-12 75.9 63 58.7
A09p37440 Brassica napus HOM05D004802 ORTHO05D005591 2.7e-10 69.3 48 70.8
Haze_07453 Corylus avellana HOM05D004802 ORTHO05D005591 7.9e-10 67.8 35 91.4
RcHm_v2.0_Chr2g0130991 Rosa chinensis HOM05D004802 ORTHO05D005591 1.0e-09 67.4 67 56.7
A06p04960 Brassica napus HOM05D005594 ORTHO05D006403 8.7e-09 64.3 58 58.6
Cfa024847 Carpinus fangiana HOM05D004802 ORTHO05D005591 5.6e-08 61.6 80 43.8
BcaC02g11004 Brassica carinata HOM05D004802 ORTHO05D005591 8.1e-07 57.8 43 67.4
C04p22280 Brassica napus HOM05D004802 ORTHO05D020149 8.1e-07 57.8 43 67.4
PRCOL_00002926 Prasinoderma coloniale HOM05D004802 ORTHO05D005591 8.1e-07 57.8 90 44.4
BolC3t13075H Brassica oleracea HOM05D004802 ORTHO05D005591 6.9e-06 54.7 29 82.8


User provided reference genes

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