Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA232G0266 Erigeron canadensis HOM05D005039 ORTHO05D006145 1.3e-255 885.9 465 100.0
HanXRQChr16g0512151 Helianthus annuus HOM05D005039 ORTHO05D006145 1.3e-242 842.8 463 95.7
Lsat_1_v5_gn_9_47921 Lactuca sativa HOM05D005039 ORTHO05D006145 6.9e-241 837.0 463 95.0
CANSAT21G2526 Cannabis sativa HOM05D005039 ORTHO05D006145 4.1e-233 811.2 463 89.8
Dinv29126 Davidia involucrata HOM05D005039 ORTHO05D006145 2.0e-232 808.9 463 90.5
SGA_v2.0_scaffold188G40301 Striga asiatica HOM05D005039 ORTHO05D006145 6.5e-231 803.9 462 89.8
MELO3C021899.2 Cucumis melo HOM05D005039 ORTHO05D006145 1.9e-230 802.4 463 89.4
Nn3g19238 Nelumbo nucifera HOM05D005039 ORTHO05D006145 2.5e-230 802.0 463 89.2
Manes.08G160900 Manihot esculenta HOM05D005039 ORTHO05D006145 3.2e-230 801.6 465 89.5
TWI79G0887 Tripterygium wilfordii HOM05D005039 ORTHO05D006145 3.2e-230 801.6 463 89.8
Aqoxy1G03063 Aquilegia oxysepala HOM05D005039 ORTHO05D006145 9.4e-230 800.0 463 89.8
GSVIVG01024328001 Vitis vinifera HOM05D005039 ORTHO05D006145 1.2e-229 799.7 463 89.2
Sed0001134 Sechium edule HOM05D005039 ORTHO05D006145 2.7e-229 798.5 463 89.2
TAR629G1612 Trochodendron aralioides HOM05D005039 ORTHO05D006145 7.9e-229 797.0 463 88.6
Nn1g02122 Nelumbo nucifera HOM05D005039 ORTHO05D006145 1.0e-228 796.6 463 88.8
MD07G1310900 Malus domestica HOM05D005039 ORTHO05D006145 2.3e-228 795.4 463 89.0
RcHm_v2.0_Chr1g0384591 Rosa chinensis HOM05D005039 ORTHO05D006145 3.9e-228 794.7 463 88.3
MSTRG.24939 Avicennia marina HOM05D005039 ORTHO05D006145 1.1e-227 793.1 463 88.1
CsaV3_2G014060 Cucumis sativus L. HOM05D005039 ORTHO05D006145 1.5e-227 792.7 463 89.0
CSS0008859 Camellia sinensis var. sinensis HOM05D005039 ORTHO05D006145 2.0e-227 792.3 463 89.8
Cfa016075 Carpinus fangiana HOM05D005039 ORTHO05D006145 2.5e-227 792.0 463 88.8
Solyc07g045330.3 Solanum lycopersicum HOM05D005039 ORTHO05D006145 4.3e-227 791.2 463 88.1
MBI04_g12218_MAGBIO Magnolia biondii HOM05D005039 ORTHO05D006145 5.7e-227 790.8 464 88.1
Sopen07g023860 Solanum pennellii HOM05D005039 ORTHO05D006145 7.4e-227 790.4 463 88.1
Migut.C00159 Erythranthe guttata HOM05D005039 ORTHO05D006145 9.7e-227 790.0 462 88.1
Ciclev10031435m.g Citrus clementina HOM05D005039 ORTHO05D006145 1.7e-226 789.3 465 88.4
SalBow7G2894 Salvia bowleyana HOM05D005039 ORTHO05D006145 2.8e-226 788.5 463 86.8
Gohir.A02G125900 Gossypium hirsutum HOM05D005039 ORTHO05D006145 3.7e-226 788.1 464 87.5
Gohir.D03G054700 Gossypium hirsutum HOM05D005039 ORTHO05D006145 3.7e-226 788.1 464 87.5
QL09p020758 Quercus lobata HOM05D005039 ORTHO05D006145 3.7e-226 788.1 462 89.0
Duzib106G2059 Durio zibethinus HOM05D005039 ORTHO05D006145 4.8e-226 787.7 463 87.7
Gorai.003G057600 Gossypium raimondii HOM05D005039 ORTHO05D006145 8.2e-226 786.9 464 87.3
CAN.G437.12 Capsicum annuum HOM05D005039 ORTHO05D006145 1.8e-225 785.8 463 87.9
Potri.013G077700 Populus trichocarpa HOM05D005039 ORTHO05D006145 4.1e-225 784.6 463 87.0
Atru.chr12.1876 Acer truncatum HOM05D005039 ORTHO05D006145 6.9e-225 783.9 463 87.0
Thecc.05G222600 Theobroma cacao HOM05D005039 ORTHO05D006145 6.9e-225 783.9 463 87.0
FvH4_7g34230 Fragaria vesca HOM05D005039 ORTHO05D006145 9.1e-225 783.5 464 87.1
FAN03G0337 Fragaria x ananassa HOM05D005039 ORTHO05D006145 1.2e-224 783.1 464 87.1
FAN10G2688 Fragaria x ananassa HOM05D005039 ORTHO05D006145 7.7e-224 780.4 463 86.8
FAN01G1789 Fragaria x ananassa HOM05D005039 ORTHO05D006145 2.2e-223 778.9 464 86.4
vmacro06372 Vaccinium macrocarpon HOM05D005039 ORTHO05D006145 6.5e-223 777.3 500 82.2
ATR0829G179 Amborella trichopoda HOM05D005039 ORTHO05D006145 2.5e-222 775.4 463 85.5
Glyma.11G109900 Glycine max HOM05D005039 ORTHO05D006145 4.2e-222 774.6 464 86.9
Glyma.12G014800 Glycine max HOM05D005039 ORTHO05D006145 9.4e-222 773.5 464 86.9
THA.LOC104805716 Tarenaya hassleriana HOM05D005039 ORTHO05D006145 9.4e-222 773.5 463 86.0
Sabra13G0066500 Salix brachista HOM05D005039 ORTHO05D006145 1.6e-221 772.7 499 81.4
PSO782G0889 Papaver somniferum HOM05D005039 ORTHO05D006145 2.1e-221 772.3 464 86.9
Ca_26497_v3 Cicer arietinum L. HOM05D005039 ORTHO05D006145 1.0e-220 770.0 464 86.6
Lj3g0003232 Lotus japonicus HOM05D005039 ORTHO05D006145 3.0e-220 768.5 463 86.6
PSO063G4466 Papaver somniferum HOM05D005039 ORTHO05D006145 3.9e-220 768.1 464 86.4
Phvul.011G017800 Phaseolus vulgaris HOM05D005039 ORTHO05D006145 1.1e-219 766.5 464 86.0
Lalb_Chr09g0320081 Lupinus albus HOM05D005039 ORTHO05D006145 2.0e-219 765.8 462 85.1
Medtr5g005440 Medicago truncatula HOM05D005039 ORTHO05D006145 7.4e-219 763.8 463 86.6
Hund09811 Selenicereus undatus HOM05D005039 ORTHO05D006145 7.4e-219 763.8 489 82.4
Eucgr.K00067 Eucalyptus grandis HOM05D005039 ORTHO05D006145 2.2e-218 762.3 449 88.2
AL2G19600 Arabidopsis lyrata HOM05D005039 ORTHO05D006145 1.4e-217 759.6 463 84.7
Ah.13g072370 Amaranthus hybridus HOM05D005039 ORTHO05D006145 2.4e-217 758.8 463 85.7
AT1G64990 Arabidopsis thaliana HOM05D005039 ORTHO05D006145 4.1e-217 758.1 463 84.7
Sp7g25580 Schrenkiella parvula HOM05D005039 ORTHO05D006145 2.0e-216 755.7 463 84.7
Carub.0002s1015 Capsella rubella HOM05D005039 ORTHO05D006145 7.7e-216 753.8 463 84.4
Carub.0007s1322 Capsella rubella HOM05D005039 ORTHO05D006145 1.7e-215 752.7 463 84.7
Thhalv10025115m.g Eutrema salsugineum HOM05D005039 ORTHO05D006145 2.9e-215 751.9 463 84.0
Aa31LG2G2190 Aethionema arabicum HOM05D005039 ORTHO05D006145 3.8e-215 751.5 463 83.6
AT4G27630 Arabidopsis thaliana HOM05D005039 ORTHO05D006145 1.1e-214 750.0 464 84.5
C01p23870 Brassica napus HOM05D005039 ORTHO05D006145 1.5e-214 749.6 463 83.8
BcaNung01651 Brassica carinata HOM05D005039 ORTHO05D006145 2.5e-214 748.8 463 84.0
CARHR235330 Cardamine hirsuta HOM05D005039 ORTHO05D006145 2.5e-214 748.8 464 83.6
A01p18920 Brassica napus HOM05D005039 ORTHO05D006145 4.2e-214 748.0 463 83.6
Zm00001eb430290 Zea mays HOM05D005039 ORTHO05D006145 4.2e-214 748.0 463 82.9
BcaC09g50566 Brassica carinata HOM05D005039 ORTHO05D006145 7.2e-214 747.3 463 83.6
BolC1t02332H Brassica oleracea HOM05D005039 ORTHO05D006145 7.2e-214 747.3 463 83.6
CARHR056390 Cardamine hirsuta HOM05D005039 ORTHO05D006145 4.7e-213 744.6 463 83.4
EL10Ac3g05043 Beta vulgaris HOM05D005039 ORTHO05D006145 6.1e-213 744.2 539 75.1
Os04g0600800 Oryza sativa ssp. japonica HOM05D005039 ORTHO05D006145 2.3e-212 742.3 463 82.3
Peaxi162Scf00802g00029 Petunia axillaris HOM05D005039 ORTHO05D006145 2.3e-212 742.3 464 84.3
Sp5g19320 Schrenkiella parvula HOM05D005039 ORTHO05D006145 3.9e-212 741.5 465 82.2
C02p21070 Brassica napus HOM05D005039 ORTHO05D006145 1.5e-211 739.6 466 82.4
BraA02t06350Z Brassica rapa HOM05D005039 ORTHO05D006145 1.5e-211 739.6 466 82.4
Nitab4.5_0006992g0040 Nicotiana tabacum HOM05D005039 ORTHO05D006145 2.2e-210 735.7 486 80.9
Duzib128G1855 Durio zibethinus HOM05D005039 ORTHO05D006145 4.8e-210 734.6 463 82.7
A02p12960 Brassica napus HOM05D005039 ORTHO05D006145 8.2e-210 733.8 467 82.0
Nitab4.5_0009864g0010 Nicotiana tabacum HOM05D005039 ORTHO05D006145 1.1e-209 733.4 465 83.7
BolC2t08248H Brassica oleracea HOM05D005039 ORTHO05D006145 7.0e-209 730.7 489 78.5
BraA01t01833Z Brassica rapa HOM05D005039 ORTHO05D006145 9.1e-209 730.3 491 78.6
AUR62002093 Chenopodium quinoa HOM05D005039 ORTHO05D006145 2.2e-207 725.7 463 82.1
PGR142G1194 Punica granatum HOM05D005039 ORTHO05D006145 6.5e-207 724.2 435 85.7
Oeu027894.4 Olea europaea HOM05D005039 ORTHO05D006145 1.0e-204 716.8 486 79.0
ClCG09G017310 Citrullus lanatus HOM05D005039 ORTHO05D006145 3.8e-199 698.4 397 90.9
Sc13g0011000 Simmondsia chinensis HOM05D005039 ORTHO05D006145 9.4e-198 693.7 412 87.1
Rhsim03G0224300 Rhododendron simsii HOM05D005039 ORTHO05D006145 2.7e-192 675.6 464 79.3
unitig_0.g2070 Utricularia gibba HOM05D005039 ORTHO05D006145 1.7e-191 672.9 457 79.0
DCAR_020429 Daucus carota HOM05D005039 ORTHO05D006145 3.8e-191 671.8 382 91.6
arahy.Tifrunner.gnm1.ann1.GG16T8 Arachis hypogaea HOM05D005039 ORTHO05D006145 1.2e-189 666.8 412 84.7
arahy.Tifrunner.gnm1.ann1.IZT0PT Arachis hypogaea HOM05D005039 ORTHO05D006145 1.2e-189 666.8 412 84.7
Actinidia08765 Actinidia chinensis HOM05D005039 ORTHO05D006145 2.1e-189 666.0 413 85.2
Mapoly0094s0006 Marchantia polymorpha HOM05D005039 ORTHO05D006145 1.0e-188 663.7 463 73.0
CSS0032758 Camellia sinensis var. sinensis HOM05D005039 ORTHO05D006145 1.5e-182 643.3 463 76.0
AUR62028211 Chenopodium quinoa HOM05D005039 ORTHO05D006145 2.8e-181 639.0 417 80.3
Prupe.2G329100 Prunus persica HOM05D005039 ORTHO05D006145 1.0e-167 594.0 340 91.8
SMO304G0068 Selaginella moellendorffii HOM05D005039 ORTHO05D006145 1.1e-166 590.5 469 65.0
CiPaw.05G212800 Carya illinoinensis HOM05D005039 ORTHO05D006145 3.3e-166 589.0 346 87.3
Cc02_g00100 Coffea canephora HOM05D005039 ORTHO05D006145 2.1e-165 586.3 368 82.6
VMungo1127G0275 Vigna mungo HOM05D005039 ORTHO05D006145 6.4e-162 574.7 369 81.6
Psat7g155320 Pisum sativum HOM05D005039 ORTHO05D006145 2.1e-160 569.7 390 79.7
HPP92_014410 Vanilla planifolia HOM05D005039 ORTHO05D006145 2.3e-159 566.2 463 68.0
CBR_g72647 Chara braunii HOM05D005039 ORTHO05D006145 5.1e-159 565.1 466 61.2
Lj3A884T54 Lonicera japonica HOM05D005039 ORTHO05D006145 5.2e-156 555.1 324 91.0
BcaB05g25317 Brassica carinata HOM05D005039 ORTHO05D006145 8.7e-135 484.6 308 79.2
Actinidia34332 Actinidia chinensis HOM05D005039 ORTHO05D006145 8.1e-133 478.0 308 83.8
MD01G1239200 Malus domestica HOM05D005039 ORTHO05D006145 2.7e-128 463.0 359 69.6
CDE11G0732 Ceratophyllum demersum HOM05D005039 ORTHO05D006145 6.0e-128 461.8 324 77.8
PGSC0003DMG401017405 Solanum tuberosum HOM05D005039 ORTHO05D006145 1.3e-114 417.5 243 90.5
COL.COLO4_15139 Corchorus olitorius HOM05D005039 ORTHO05D006145 3.8e-90 336.3 312 63.1
PGSC0003DMG402017405 Solanum tuberosum HOM05D005039 ORTHO05D006145 5.9e-83 312.4 175 86.9
AagrBONN_evm.TU.Sc2ySwM_369.165 Anthoceros agrestis HOM05D005039 ORTHO05D006145 6.1e-80 302.4 302 56.3
Cre16.g674739 Chlamydomonas reinhardtii HOM05D005039 ORTHO05D006145 6.1e-80 302.4 506 37.5
Haze_00371 Corylus avellana HOM05D005039 ORTHO05D006145 6.1e-80 302.4 243 69.1
Actinidia24520 Actinidia chinensis HOM05D005039 ORTHO05D006145 2.3e-79 300.4 168 87.5
AagrBONN_evm.TU.Sc2ySwM_117.727 Anthoceros agrestis HOM05D005039 ORTHO05D006145 2.8e-72 276.9 204 62.3
AagrBONN_evm.TU.Sc2ySwM_369.410 Anthoceros agrestis HOM05D005039 ORTHO05D006145 2.2e-69 267.3 294 53.4
BcaC03g14670 Brassica carinata HOM05D005039 ORTHO05D006145 8.3e-69 265.4 160 88.1
BcaB05g24073 Brassica carinata HOM05D005039 ORTHO05D006145 1.2e-59 235.0 138 90.6
EL10Ac3g05835 Beta vulgaris HOM05D005039 ORTHO05D006145 1.1e-55 221.9 195 66.7
CARHR057320 Cardamine hirsuta HOM05D005039 ORTHO05D006145 3.1e-55 220.3 407 41.0
Cc02_g00110 Coffea canephora HOM05D005039 ORTHO05D006145 2.2e-53 214.2 119 94.1
MCO06G137 Micromonas commoda HOM05D005039 ORTHO05D006145 5.1e-50 203.0 327 38.8
SEGI_29432 Sequoiadendron giganteum HOM05D005039 ORTHO05D006145 2.9e-45 187.2 111 88.3
PRCOL_00000150 Prasinoderma coloniale HOM05D005039 ORTHO05D006145 3.8e-45 186.8 449 31.8
Cpa.g.sc43.133 Carica papaya HOM05D005039 ORTHO05D006145 3.2e-44 183.7 115 85.2
SEGI_13634 Sequoiadendron giganteum HOM05D005039 ORTHO05D006145 7.3e-41 172.6 99 81.8
CDE11G0023 Ceratophyllum demersum HOM05D005039 ORTHO05D006145 8.1e-40 169.1 101 78.2
CSS0027952 Camellia sinensis var. sinensis HOM05D005039 ORTHO05D006145 1.5e-38 164.9 91 92.3
CSS0015728 Camellia sinensis var. sinensis HOM05D005039 ORTHO05D006145 1.3e-29 135.2 76 86.8
Carub.0008s0531 Capsella rubella HOM05D005039 ORTHO05D006145 3.5e-27 127.1 81 82.7
Cpa.g.sc43.132 Carica papaya HOM05D005039 ORTHO05D006145 2.3e-26 124.4 74 82.4
COL.COLO4_15138 Corchorus olitorius HOM05D005039 ORTHO05D006145 1.1e-23 115.5 66 83.3
Oeu028985.2 Olea europaea HOM05D005039 ORTHO05D006145 4.5e-22 110.2 99 62.6
Cpa.g.sc43.136 Carica papaya HOM05D005039 ORTHO05D006145 7.6e-22 109.4 66 81.8
CSS0031224 Camellia sinensis var. sinensis HOM05D005039 ORTHO05D006145 1.3e-21 108.6 68 79.4
ClCG09G017320 Citrullus lanatus HOM05D005039 ORTHO05D006145 2.2e-21 107.8 66 80.3
Solyc07g045270.2 Solanum lycopersicum HOM05D005039 ORTHO05D006145 6.4e-21 106.3 57 87.7
SEGI_05893 Sequoiadendron giganteum HOM05D005039 ORTHO05D006145 2.4e-20 104.4 57 84.2
SHI14975 Sapria himalayana HOM05D000023 ORTHO05D000014 4.6e-19 100.1 73 71.2
Carub.0008s0533 Capsella rubella HOM05D005039 ORTHO05D006145 1.2e-14 85.5 52 84.6
GSVIVG01028619001 Vitis vinifera HOM05D005039 ORTHO05D048867 1.7e-13 81.6 74 60.8
Potri.019G042201 Populus trichocarpa HOM05D005039 ORTHO05D006145 2.2e-13 81.3 52 84.6
MD01G1239000 Malus domestica HOM05D005039 ORTHO05D006145 2.9e-13 80.9 46 95.7
Zm00001eb027530 Zea mays HOM05D011105 ORTHO05D007705 6.5e-13 79.7 55 78.2
EL10Ac7g16242 Beta vulgaris HOM05D005039 ORTHO05D006145 1.1e-12 79.0 44 90.9


User provided reference genes

Program Settings