Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA232G0163 Erigeron canadensis HOM05D004185 ORTHO05D005294 2.0e-161 572.4 291 100.0
HanXRQChr05g0146191 Helianthus annuus HOM05D004185 ORTHO05D005294 7.8e-142 507.3 291 87.3
Lsat_1_v5_gn_9_110520 Lactuca sativa HOM05D004185 ORTHO05D005294 8.4e-136 487.3 293 84.6
HanXRQChr03g0070171 Helianthus annuus HOM05D004185 ORTHO05D005294 1.9e-135 486.1 289 85.1
Lj1A1083G27 Lonicera japonica HOM05D004185 ORTHO05D005294 1.0e-104 384.0 288 66.7
Hma1.2p1_0565F.1_g179520 Hydrangea macrophylla HOM05D004185 ORTHO05D005294 3.8e-104 382.1 287 70.4
Atru.chr3.2840 Acer truncatum HOM05D004185 ORTHO05D005294 1.1e-103 380.6 267 73.0
Manes.11G075000 Manihot esculenta HOM05D004185 ORTHO05D005294 1.9e-103 379.8 284 68.3
GSVIVG01032967001 Vitis vinifera HOM05D004185 ORTHO05D005294 3.2e-103 379.0 246 76.4
RcHm_v2.0_Chr7g0223141 Rosa chinensis HOM05D004185 ORTHO05D005294 1.2e-102 377.1 289 68.2
PGSC0003DMG402004569 Solanum tuberosum HOM05D004185 ORTHO05D005294 1.6e-102 376.7 281 68.0
CAN.G767.4 Capsicum annuum HOM05D004185 ORTHO05D005294 2.1e-102 376.3 281 68.7
Oeu023432.1 Olea europaea HOM05D004185 ORTHO05D005294 4.7e-102 375.2 274 69.7
Prupe.6G095300 Prunus persica HOM05D004185 ORTHO05D005294 1.0e-101 374.0 290 67.2
Sopen10g001890 Solanum pennellii HOM05D004185 ORTHO05D005294 2.3e-101 372.9 261 71.3
SGA_v2.0_scaffold114G31833 Striga asiatica HOM05D004185 ORTHO05D005294 2.3e-101 372.9 263 71.1
PSO017G0731 Papaver somniferum HOM05D004185 ORTHO05D005294 3.0e-101 372.5 244 75.4
PGR142G0491 Punica granatum HOM05D004185 ORTHO05D005294 3.9e-101 372.1 240 75.0
Solyc10g005930.2 Solanum lycopersicum HOM05D004185 ORTHO05D005294 6.7e-101 371.3 261 71.3
Thecc.04G049500 Theobroma cacao HOM05D004185 ORTHO05D005294 6.7e-101 371.3 243 75.7
Sc07g0003880 Simmondsia chinensis HOM05D004185 ORTHO05D005294 1.1e-100 370.5 245 73.5
PSO478G4545 Papaver somniferum HOM05D004185 ORTHO05D005294 1.5e-100 370.2 241 75.9
Migut.D01934 Erythranthe guttata HOM05D004185 ORTHO05D005294 2.0e-100 369.8 268 68.7
TAR374G1058 Trochodendron aralioides HOM05D004185 ORTHO05D005294 2.0e-100 369.8 279 66.7
arahy.Tifrunner.gnm1.ann1.J4TN1Z Arachis hypogaea HOM05D004185 ORTHO05D005294 2.6e-100 369.4 246 73.6
arahy.Tifrunner.gnm1.ann1.DC6XCB Arachis hypogaea HOM05D004185 ORTHO05D005294 3.3e-100 369.0 246 73.6
FAN05G5133 Fragaria x ananassa HOM05D004185 ORTHO05D005294 4.4e-100 368.6 291 68.4
FAN21G3167 Fragaria x ananassa HOM05D004185 ORTHO05D005294 4.4e-100 368.6 289 67.5
TWI63G0858 Tripterygium wilfordii HOM05D004185 ORTHO05D005294 4.4e-100 368.6 268 70.5
MD11G1131000 Malus domestica HOM05D004185 ORTHO05D005294 7.4e-100 367.9 232 78.0
Ciclev10005565m.g Citrus clementina HOM05D004185 ORTHO05D005294 1.3e-99 367.1 236 78.4
FAN14G0322 Fragaria x ananassa HOM05D004185 ORTHO05D005294 1.7e-99 366.7 294 67.0
Potri.001G391400 Populus trichocarpa HOM05D004185 ORTHO05D005294 1.7e-99 366.7 282 66.3
Sabra16G0256800 Salix brachista HOM05D004185 ORTHO05D005294 1.7e-99 366.7 279 65.2
Actinidia37713 Actinidia chinensis HOM05D004185 ORTHO05D005294 2.8e-99 365.9 287 65.5
Duzib084G1135 Durio zibethinus HOM05D004185 ORTHO05D005294 3.7e-99 365.5 240 75.0
Eucgr.F01985 Eucalyptus grandis HOM05D004185 ORTHO05D005294 4.8e-99 365.2 236 75.4
FvH4_3g33130 Fragaria vesca HOM05D004185 ORTHO05D005294 4.8e-99 365.2 289 67.5
Rhsim01G0198500 Rhododendron simsii HOM05D004185 ORTHO05D005294 4.8e-99 365.2 253 71.9
FAN16G0073 Fragaria x ananassa HOM05D004185 ORTHO05D005294 8.2e-99 364.4 294 67.0
BcaB07g32843 Brassica carinata HOM05D004185 ORTHO05D005294 1.4e-98 363.6 273 67.8
THA.LOC104812726 Tarenaya hassleriana HOM05D004185 ORTHO05D005294 1.4e-98 363.6 232 75.9
AT1G31860 Arabidopsis thaliana HOM05D004185 ORTHO05D005294 1.8e-98 363.2 282 66.0
BcaB03g13785 Brassica carinata HOM05D004185 ORTHO05D005294 1.8e-98 363.2 237 74.3
A09p34390 Brassica napus HOM05D004185 ORTHO05D005294 1.8e-98 363.2 283 66.8
BraA09t38984Z Brassica rapa HOM05D004185 ORTHO05D005294 1.8e-98 363.2 283 66.8
AUR62008433 Chenopodium quinoa HOM05D004185 ORTHO05D005294 4.1e-98 362.1 265 66.4
MBI07_g13955_MAGBIO Magnolia biondii HOM05D004185 ORTHO05D005294 4.1e-98 362.1 255 70.6
Actinidia19546 Actinidia chinensis HOM05D004185 ORTHO05D005294 5.3e-98 361.7 287 63.8
AUR62021660 Chenopodium quinoa HOM05D004185 ORTHO05D005294 5.3e-98 361.7 265 66.4
Rhsim08G0038300 Rhododendron simsii HOM05D004185 ORTHO05D005294 7.0e-98 361.3 287 66.2
vmacro18393 Vaccinium macrocarpon HOM05D004185 ORTHO05D005294 7.0e-98 361.3 289 65.7
Thhalv10008417m.g Eutrema salsugineum HOM05D004185 ORTHO05D005294 2.0e-97 359.8 283 65.0
Glyma.16G046900 Glycine max HOM05D004185 ORTHO05D005294 2.0e-97 359.8 231 76.6
Gohir.D01G158300 Gossypium hirsutum HOM05D004185 ORTHO05D005294 2.0e-97 359.8 241 73.9
Gorai.002G196300 Gossypium raimondii HOM05D004185 ORTHO05D005294 2.0e-97 359.8 241 73.9
CiPaw.07G054200 Carya illinoinensis HOM05D004185 ORTHO05D005294 2.6e-97 359.4 246 72.4
AL1G45960 Arabidopsis lyrata HOM05D004185 ORTHO05D005294 3.5e-97 359.0 282 64.9
QL08p064476 Quercus lobata HOM05D004185 ORTHO05D005294 4.5e-97 358.6 242 73.1
Cfa007152 Carpinus fangiana HOM05D004185 ORTHO05D005294 5.9e-97 358.2 247 72.1
Ca_08226_v3 Cicer arietinum L. HOM05D004185 ORTHO05D005294 5.9e-97 358.2 235 73.6
Haze_14968 Corylus avellana HOM05D004185 ORTHO05D005294 5.9e-97 358.2 247 72.5
Aa31LG2G14180 Aethionema arabicum HOM05D004185 ORTHO05D005294 7.7e-97 357.8 275 65.8
Cpa.g.sc139.45 Carica papaya HOM05D004185 ORTHO05D005294 1.0e-96 357.5 232 76.3
VMungo0464G1671 Vigna mungo HOM05D004185 ORTHO05D005294 1.0e-96 357.5 231 76.2
Gohir.A09G051200 Gossypium hirsutum HOM05D004185 ORTHO05D005294 1.3e-96 357.1 258 70.2
Lj1g0009190 Lotus japonicus HOM05D004185 ORTHO05D005294 1.7e-96 356.7 232 75.0
MD03G1104500 Malus domestica HOM05D004185 ORTHO05D005294 1.7e-96 356.7 230 76.5
SalBow2G1694 Salvia bowleyana HOM05D004185 ORTHO05D005294 1.7e-96 356.7 236 73.7
TAR622G0010 Trochodendron aralioides HOM05D004185 ORTHO05D005294 1.7e-96 356.7 319 58.3
BcaC05g27950 Brassica carinata HOM05D004185 ORTHO05D005294 3.8e-96 355.5 234 73.9
C05p39540 Brassica napus HOM05D004185 ORTHO05D005294 3.8e-96 355.5 234 73.9
BolC5t32695H Brassica oleracea HOM05D004185 ORTHO05D005294 3.8e-96 355.5 234 73.9
Nn1g02944 Nelumbo nucifera HOM05D004185 ORTHO05D005294 3.8e-96 355.5 232 74.6
Psat3g092000 Pisum sativum HOM05D004185 ORTHO05D005294 3.8e-96 355.5 231 75.8
TPR.G26467 Trifolium pratense HOM05D004185 ORTHO05D005294 3.8e-96 355.5 231 75.8
Sp1g27580 Schrenkiella parvula HOM05D004185 ORTHO05D005294 5.0e-96 355.1 283 64.7
MSTRG.11461 Avicennia marina HOM05D004185 ORTHO05D005294 8.5e-96 354.4 224 77.2
CARHR031200 Cardamine hirsuta HOM05D004185 ORTHO05D005294 8.5e-96 354.4 283 65.4
CANSAT80G1231 Cannabis sativa HOM05D004185 ORTHO05D005294 1.4e-95 353.6 236 74.6
Lj2g0021694 Lotus japonicus HOM05D004185 ORTHO05D005294 1.4e-95 353.6 232 74.6
Peaxi162Scf00060g00441 Petunia axillaris HOM05D004185 ORTHO05D005294 1.4e-95 353.6 259 69.5
Atru.chr11.1029 Acer truncatum HOM05D004185 ORTHO05D005294 1.9e-95 353.2 236 75.0
COL.COLO4_05853 Corchorus olitorius HOM05D004546 ORTHO05D005294 2.5e-95 352.8 245 71.8
A05p25460 Brassica napus HOM05D004185 ORTHO05D005294 3.2e-95 352.4 235 74.0
DCAR_009570 Daucus carota HOM05D004185 ORTHO05D005294 3.2e-95 352.4 250 70.4
EL10Ac5g11038 Beta vulgaris HOM05D004185 ORTHO05D005294 4.2e-95 352.1 269 65.1
Medtr7g084480 Medicago truncatula HOM05D004185 ORTHO05D005294 5.5e-95 351.7 231 75.3
unitig_0.g1440 Utricularia gibba HOM05D004185 ORTHO05D005294 1.2e-94 350.5 247 69.6
ATR0602G180 Amborella trichopoda HOM05D004185 ORTHO05D005294 1.6e-94 350.1 285 63.5
BraA05t21430Z Brassica rapa HOM05D004185 ORTHO05D005294 1.6e-94 350.1 277 65.7
Lalb_Chr02g0153581 Lupinus albus HOM05D004185 ORTHO05D005294 1.6e-94 350.1 244 70.9
Aqoxy6G01376 Aquilegia oxysepala HOM05D004185 ORTHO05D005294 2.3e-93 346.3 296 62.5
BcaC05g27215 Brassica carinata HOM05D004185 ORTHO05D005294 3.9e-93 345.5 289 63.7
BolC5t31845H Brassica oleracea HOM05D004185 ORTHO05D005294 3.9e-93 345.5 289 63.7
Os01g0276500 Oryza sativa ssp. japonica HOM05D004185 ORTHO05D005294 3.3e-92 342.4 235 71.1
FAN25G2535 Fragaria x ananassa HOM05D004185 ORTHO05D005294 2.2e-91 339.7 289 63.7
Nitab4.5_0002655g0020 Nicotiana tabacum HOM05D004185 ORTHO05D005294 2.2e-91 339.7 284 62.7
CDE09G0075 Ceratophyllum demersum HOM05D004185 ORTHO05D005294 2.4e-90 336.3 250 67.2
Nitab4.5_0000426g0080 Nicotiana tabacum HOM05D004185 ORTHO05D005294 2.0e-89 333.2 294 60.2
Zm00001eb332710 Zea mays HOM05D004185 ORTHO05D005294 1.0e-88 330.9 234 70.1
CsaV3_5G025000 Cucumis sativus L. HOM05D004185 ORTHO05D005294 2.2e-88 329.7 284 59.9
ClCG01G007890 Citrullus lanatus HOM05D004185 ORTHO05D005294 6.5e-88 328.2 248 65.3
Gorai.006G057300 Gossypium raimondii HOM05D004185 ORTHO05D005294 1.6e-86 323.6 258 65.1
SEGI_19426 Sequoiadendron giganteum HOM05D004185 ORTHO05D005294 1.6e-86 323.6 236 65.7
MELO3C005094.2 Cucumis melo HOM05D004185 ORTHO05D005294 1.8e-85 320.1 284 59.2
SHI18823 Sapria himalayana HOM05D004185 ORTHO05D005294 1.8e-85 320.1 246 67.1
CDE02G0170 Ceratophyllum demersum HOM05D004185 ORTHO05D005294 2.0e-84 316.6 238 65.5
RcHm_v2.0_Chr5g0060441 Rosa chinensis HOM05D004185 ORTHO05D005294 8.3e-83 311.2 202 76.2
Hund11935 Selenicereus undatus HOM05D004185 ORTHO05D005294 5.3e-82 308.5 203 71.9
Carub.0001s3019 Capsella rubella HOM05D004185 ORTHO05D005294 7.0e-82 308.1 199 74.4
Cc02_g08450 Coffea canephora HOM05D004185 ORTHO05D005294 7.0e-82 308.1 201 77.1
AagrBONN_evm.TU.Sc2ySwM_228.4587 Anthoceros agrestis HOM05D004185 ORTHO05D005294 1.6e-81 307.0 234 66.2
SMO119G0194 Selaginella moellendorffii HOM05D004185 ORTHO05D005294 5.9e-81 305.1 234 65.4
Mapoly0010s0125 Marchantia polymorpha HOM05D004185 ORTHO05D005294 1.3e-80 303.9 233 66.1
Phvul.001G082700 Phaseolus vulgaris HOM05D004185 ORTHO05D005294 2.2e-80 303.1 199 75.4
CSS0049496 Camellia sinensis var. sinensis HOM05D004185 ORTHO05D005294 5.0e-80 302.0 192 77.1
arahy.Tifrunner.gnm1.ann1.75SEPN Arachis hypogaea HOM05D004185 ORTHO05D005294 1.0e-77 294.3 246 61.4
Sed0024479 Sechium edule HOM05D004185 ORTHO05D005294 1.4e-77 293.9 203 70.9
HPP92_023021 Vanilla planifolia HOM05D004185 ORTHO05D005294 2.8e-75 286.2 199 70.9
Pp3c19_11880 Physcomitrium patens HOM05D004185 ORTHO05D005294 3.7e-75 285.8 232 63.4
MD03G1104300 Malus domestica HOM05D004185 ORTHO05D005294 1.4e-74 283.9 232 65.5
FAN02G1839 Fragaria x ananassa HOM05D004185 ORTHO05D005294 1.8e-74 283.5 234 65.4
Gohir.D09G052300 Gossypium hirsutum HOM05D004185 ORTHO05D005294 1.8e-74 283.5 199 71.4
FvH4_6g09080 Fragaria vesca HOM05D004185 ORTHO05D005294 9.1e-74 281.2 221 67.0
CBR_g41148 Chara braunii HOM05D004185 ORTHO05D005294 1.1e-71 274.2 243 58.0
Haze_15442 Corylus avellana HOM05D004185 ORTHO05D005294 9.5e-71 271.2 230 60.9
MBI07_g07565_MAGBIO Magnolia biondii HOM05D004185 ORTHO05D005294 3.6e-70 269.2 167 78.4
C05p31190 Brassica napus HOM05D004185 ORTHO05D005294 4.7e-70 268.9 284 53.2
CBR_g45683 Chara braunii HOM05D004185 ORTHO05D005294 1.4e-66 257.3 226 59.3
MCO14G189 Micromonas commoda HOM05D004185 ORTHO05D005294 2.0e-65 253.4 238 55.9
CSS0023313 Camellia sinensis var. sinensis HOM05D004185 ORTHO05D005294 2.7e-65 253.1 187 69.5
PRCOL_00000818 Prasinoderma coloniale HOM05D004185 ORTHO05D005294 2.8e-62 243.0 230 54.3
CSS0015772 Camellia sinensis var. sinensis HOM05D004185 ORTHO05D005294 1.4e-61 240.7 175 68.6
Cre13.g576650 Chlamydomonas reinhardtii HOM05D004185 ORTHO05D005294 9.8e-60 234.6 245 50.6
Gorai.008G088200 Gossypium raimondii HOM05D004185 ORTHO05D005294 3.6e-54 216.1 258 46.9
Cc00_g25400 Coffea canephora HOM05D004185 ORTHO05D005294 2.3e-53 213.4 137 78.1
Dinv33271 Davidia involucrata HOM05D004185 ORTHO05D005294 3.1e-53 213.0 211 55.5
Nn7g37500 Nelumbo nucifera HOM05D004185 ORTHO05D005294 8.9e-53 211.5 134 73.1
QL02p069093 Quercus lobata HOM05D004185 ORTHO05D005294 2.4e-50 203.4 146 67.1
Gorai.007G236100 Gossypium raimondii HOM05D004185 ORTHO05D005294 6.2e-46 188.7 147 66.7
Gohir.D11G219700 Gossypium hirsutum HOM05D004185 ORTHO05D005294 9.9e-44 181.4 131 71.0
Gohir.1Z049452 Gossypium hirsutum HOM05D004185 ORTHO05D005294 1.5e-39 167.5 131 66.4
vmacro12996 Vaccinium macrocarpon HOM05D004185 ORTHO05D005294 9.6e-39 164.9 158 58.2
Gohir.1Z049352 Gossypium hirsutum HOM05D004185 ORTHO05D005294 2.2e-35 153.7 112 66.1
Gohir.D12G080201 Gossypium hirsutum HOM05D004185 ORTHO05D005294 2.2e-35 153.7 112 66.1
CDE01G0632 Ceratophyllum demersum HOM05D004185 ORTHO05D005294 5.4e-34 149.1 119 66.4
Prupe.6G096900 Prunus persica HOM05D004185 ORTHO05D005294 1.9e-31 140.6 124 58.9
MD03G1104400 Malus domestica HOM05D004185 ORTHO05D005294 4.9e-27 125.9 157 47.8
Gohir.D11G259201 Gossypium hirsutum HOM05D002015 ORTHO05D016007 7.8e-25 118.6 74 75.7
Gorai.002G177700 Gossypium raimondii HOM05D002015 ORTHO05D016007 2.3e-24 117.1 74 75.7
Gohir.D01G143966 Gossypium hirsutum HOM05D002015 ORTHO05D016007 3.0e-24 116.7 74 74.3
Gohir.D02G127900 Gossypium hirsutum HOM05D002015 ORTHO05D016007 3.9e-24 116.3 74 74.3
Ca_29370_v3 Cicer arietinum L. HOM05D004185 ORTHO05D005294 1.1e-23 114.8 199 37.2
Gohir.D04G064100 Gossypium hirsutum HOM05D002015 ORTHO05D016007 1.9e-23 114.0 74 71.6
arahy.Tifrunner.gnm1.ann1.R9VNWC Arachis hypogaea HOM05D004185 ORTHO05D085194 4.0e-21 106.3 90 61.1
Nn7g37501 Nelumbo nucifera HOM05D004185 ORTHO05D005294 3.8e-19 99.8 74 66.2
QL02p069129 Quercus lobata HOM05D004185 ORTHO05D005294 1.8e-16 90.9 64 68.8
SMO179G0001 Selaginella moellendorffii HOM05D004185 ORTHO05D005294 4.3e-15 86.3 68 63.2
QL02p068903 Quercus lobata HOM05D004185 ORTHO05D005294 4.8e-14 82.8 67 62.7
QL02p069147 Quercus lobata HOM05D004185 ORTHO05D005294 1.1e-13 81.6 66 63.6
Glyma.11G241900 Glycine max HOM05D004185 ORTHO05D005294 6.9e-13 79.0 64 62.5
Gorai.005G143700 Gossypium raimondii HOM05D004185 ORTHO05D016007 2.2e-11 73.9 44 79.5
QL02p069014 Quercus lobata HOM05D004185 ORTHO05D005294 3.2e-10 70.1 54 70.4
Gohir.D13G151200 Gossypium hirsutum HOM05D004185 ORTHO05D016007 7.1e-10 68.9 44 70.5
SMO119G0521 Selaginella moellendorffii HOM05D004185 ORTHO05D005294 2.1e-09 67.4 68 50.0
RcHm_v2.0_Chr5g0060451 Rosa chinensis HOM05D004185 ORTHO05D005294 3.9e-08 63.2 91 45.1
A09p34420 Brassica napus HOM05D004185 ORTHO05D040565 4.3e-07 59.7 38 63.2
BraA09t38986Z Brassica rapa HOM05D004185 ORTHO05D040565 4.3e-07 59.7 38 63.2
Lsat_1_v5_gn_7_107220 Lactuca sativa HOM05D002653 ORTHO05D002623 1.6e-06 57.8 48 56.2
Lsat_1_v5_gn_9_71520 Lactuca sativa HOM05D002653 ORTHO05D002623 2.8e-06 57.0 48 58.3
Lsat_1_v5_gn_0_27401 Lactuca sativa HOM05D004523 ORTHO05D232977 6.2e-06 55.8 38 73.7
Lsat_1_v5_gn_8_21501 Lactuca sativa HOM05D004523 ORTHO05D232313 6.2e-06 55.8 38 73.7
Lsat_1_v5_gn_1_69101 Lactuca sativa HOM05D002653 ORTHO05D002623 8.2e-06 55.5 47 55.3


User provided reference genes

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