Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA232G0159 Erigeron canadensis HOM05D003945 ORTHO05D004625 0.0e+00 1599.7 815 100.0
HanXRQChr09g0268441 Helianthus annuus HOM05D003945 ORTHO05D004625 0.0e+00 1420.6 816 88.2
Lsat_1_v5_gn_4_119740 Lactuca sativa HOM05D003945 ORTHO05D004625 0.0e+00 1374.4 824 86.5
HanXRQChr00c0117g0571731 Helianthus annuus HOM05D003945 ORTHO05D004625 0.0e+00 1320.8 824 83.3
Lsat_1_v5_gn_1_18561 Lactuca sativa HOM05D003945 ORTHO05D004625 0.0e+00 1314.3 822 83.1
HanXRQChr04g0104741 Helianthus annuus HOM05D003945 ORTHO05D004625 0.0e+00 1303.9 824 80.9
ECA247G1056 Erigeron canadensis HOM05D003945 ORTHO05D004625 0.0e+00 1300.8 821 82.2
Lj4A44G44 Lonicera japonica HOM05D003945 ORTHO05D004625 0.0e+00 1292.3 813 81.2
Ciclev10000250m.g Citrus clementina HOM05D003945 ORTHO05D004625 0.0e+00 1278.8 824 80.2
Gohir.D06G009400 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1276.2 821 80.1
Gorai.010G012200 Gossypium raimondii HOM05D003945 ORTHO05D004625 0.0e+00 1276.2 821 80.1
Gohir.A06G012000 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1275.8 821 80.1
Dinv39382 Davidia involucrata HOM05D003945 ORTHO05D004625 0.0e+00 1273.8 852 77.1
Thecc.08G022100 Theobroma cacao HOM05D003945 ORTHO05D004625 0.0e+00 1271.9 824 79.9
Lj5g0000532 Lotus japonicus HOM05D003945 ORTHO05D004625 0.0e+00 1270.0 823 79.5
Duzib093G0983 Durio zibethinus HOM05D003945 ORTHO05D004625 0.0e+00 1264.6 824 79.9
Duzib116G0373 Durio zibethinus HOM05D003945 ORTHO05D004625 0.0e+00 1264.2 824 79.6
Haze_17624 Corylus avellana HOM05D003945 ORTHO05D004625 0.0e+00 1263.4 793 81.7
Duzib041G0798 Durio zibethinus HOM05D003945 ORTHO05D004625 0.0e+00 1263.1 824 79.2
Cfa018443 Carpinus fangiana HOM05D003945 ORTHO05D004625 0.0e+00 1262.7 813 80.3
GSVIVG01009647001 Vitis vinifera HOM05D003945 ORTHO05D004625 0.0e+00 1262.7 819 79.5
Gorai.009G205100 Gossypium raimondii HOM05D003945 ORTHO05D004625 0.0e+00 1260.7 824 79.1
Cc10_g03360 Coffea canephora HOM05D003945 ORTHO05D004625 0.0e+00 1260.4 816 79.4
FvH4_2g40290 Fragaria vesca HOM05D003945 ORTHO05D004625 0.0e+00 1260.4 824 79.1
Gohir.D05G199800 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1260.0 824 79.1
RcHm_v2.0_Chr6g0300451 Rosa chinensis HOM05D003945 ORTHO05D004625 0.0e+00 1258.0 825 78.8
FAN27G0143 Fragaria x ananassa HOM05D003945 ORTHO05D004625 0.0e+00 1257.7 824 78.9
CANSAT25G0653 Cannabis sativa HOM05D003945 ORTHO05D004625 0.0e+00 1256.5 816 79.3
arahy.Tifrunner.gnm1.ann1.6F7CQG Arachis hypogaea HOM05D003945 ORTHO05D004625 0.0e+00 1255.4 818 80.2
Potri.002G133300 Populus trichocarpa HOM05D003945 ORTHO05D004625 0.0e+00 1254.6 824 78.8
Glyma.06G034400 Glycine max HOM05D003945 ORTHO05D004625 0.0e+00 1254.2 823 79.8
CiPaw.15G072600 Carya illinoinensis HOM05D003945 ORTHO05D004625 0.0e+00 1253.4 812 78.8
FAN20G0651 Fragaria x ananassa HOM05D003945 ORTHO05D004625 0.0e+00 1252.3 824 78.5
Prupe.1G383600 Prunus persica HOM05D003945 ORTHO05D004625 0.0e+00 1252.3 826 78.5
Cpa.g.sc64.47 Carica papaya HOM05D003945 ORTHO05D004625 0.0e+00 1251.9 815 79.0
Actinidia22566 Actinidia chinensis HOM05D003945 ORTHO05D004625 0.0e+00 1251.5 826 78.2
CsaV3_2G028440 Cucumis sativus L. HOM05D003945 ORTHO05D004625 0.0e+00 1251.1 813 78.4
QL02p007358 Quercus lobata HOM05D003945 ORTHO05D004625 0.0e+00 1250.3 822 78.6
Glyma.04G034200 Glycine max HOM05D003945 ORTHO05D004625 0.0e+00 1248.4 822 79.7
Phvul.009G055900 Phaseolus vulgaris HOM05D003945 ORTHO05D004625 0.0e+00 1248.4 823 79.5
FAN15G1095 Fragaria x ananassa HOM05D003945 ORTHO05D004625 0.0e+00 1247.3 830 78.1
MSTRG.24306 Avicennia marina HOM05D003945 ORTHO05D004625 0.0e+00 1246.1 821 79.0
Potri.014G040800 Populus trichocarpa HOM05D003945 ORTHO05D004625 0.0e+00 1244.6 824 78.8
PGSC0003DMG400016879 Solanum tuberosum HOM05D003945 ORTHO05D004625 0.0e+00 1243.8 824 77.4
Manes.05G163500 Manihot esculenta HOM05D003945 ORTHO05D004625 0.0e+00 1243.4 823 79.5
Psat5g018920 Pisum sativum HOM05D003945 ORTHO05D004625 0.0e+00 1243.4 815 78.7
TPR.G12378 Trifolium pratense HOM05D003945 ORTHO05D004625 0.0e+00 1243.0 824 79.0
Medtr3g111630 Medicago truncatula HOM05D003945 ORTHO05D004625 0.0e+00 1242.6 825 78.7
Glyma.14G077200 Glycine max HOM05D003945 ORTHO05D004625 0.0e+00 1242.3 816 77.8
Sed0018308 Sechium edule HOM05D003945 ORTHO05D004625 0.0e+00 1241.9 817 78.5
Lalb_Chr24g0399061 Lupinus albus HOM05D003945 ORTHO05D004625 0.0e+00 1241.5 822 77.5
PGR031G2694 Punica granatum HOM05D003945 ORTHO05D004625 0.0e+00 1239.2 824 78.2
Solyc04g079900.3 Solanum lycopersicum HOM05D003945 ORTHO05D004625 0.0e+00 1238.0 824 78.3
Lalb_Chr14g0369061 Lupinus albus HOM05D003945 ORTHO05D004625 0.0e+00 1237.6 822 78.8
TWI56G0898 Tripterygium wilfordii HOM05D003945 ORTHO05D004625 0.0e+00 1237.6 816 78.9
CAN.G371.130 Capsicum annuum HOM05D003945 ORTHO05D004625 0.0e+00 1237.2 824 78.3
Sopen04g033470 Solanum pennellii HOM05D003945 ORTHO05D004625 0.0e+00 1236.5 824 78.2
Nitab4.5_0003588g0030 Nicotiana tabacum HOM05D003945 ORTHO05D004625 0.0e+00 1236.1 832 78.4
Manes.18G029900 Manihot esculenta HOM05D003945 ORTHO05D004625 0.0e+00 1235.7 817 78.5
Aqoxy6G01012 Aquilegia oxysepala HOM05D003945 ORTHO05D004625 0.0e+00 1234.6 815 78.3
CSS0008782 Camellia sinensis var. sinensis HOM05D003945 ORTHO05D004625 0.0e+00 1234.6 820 77.4
MD08G1036300 Malus domestica HOM05D003945 ORTHO05D004625 0.0e+00 1233.8 798 79.3
TAR381G0557 Trochodendron aralioides HOM05D003945 ORTHO05D004625 0.0e+00 1232.6 817 78.2
Nn5g29493 Nelumbo nucifera HOM05D003945 ORTHO05D004625 0.0e+00 1232.2 826 76.4
VMungo0647G1838 Vigna mungo HOM05D003945 ORTHO05D004625 0.0e+00 1232.2 813 77.5
Sabra02G0104100 Salix brachista HOM05D003945 ORTHO05D004625 0.0e+00 1231.9 826 78.6
SalBow8G1011 Salvia bowleyana HOM05D003945 ORTHO05D004625 0.0e+00 1231.5 817 78.1
AUR62033857 Chenopodium quinoa HOM05D003945 ORTHO05D004625 0.0e+00 1231.1 818 77.3
CiPaw.16G054000 Carya illinoinensis HOM05D003945 ORTHO05D004625 0.0e+00 1230.7 813 77.7
THA.LOC104809128 Tarenaya hassleriana HOM05D003945 ORTHO05D004625 0.0e+00 1229.2 821 77.3
arahy.Tifrunner.gnm1.ann1.SKM2GN Arachis hypogaea HOM05D003945 ORTHO05D004625 0.0e+00 1228.8 853 71.5
Lj1g0024333 Lotus japonicus HOM05D003945 ORTHO05D004625 0.0e+00 1228.8 822 78.7
Sed0019202 Sechium edule HOM05D003945 ORTHO05D004625 0.0e+00 1226.8 817 77.7
Psat6g032680 Pisum sativum HOM05D003945 ORTHO05D004625 0.0e+00 1224.5 822 78.6
Eucgr.A00488 Eucalyptus grandis HOM05D003945 ORTHO05D004625 0.0e+00 1223.4 823 78.5
TWI12G1285 Tripterygium wilfordii HOM05D003945 ORTHO05D004625 0.0e+00 1223.4 785 81.1
Nitab4.5_0000110g0200 Nicotiana tabacum HOM05D003945 ORTHO05D004625 0.0e+00 1220.7 820 77.8
Gorai.009G274100 Gossypium raimondii HOM05D003945 ORTHO05D004625 0.0e+00 1220.3 824 76.7
Sabra14G0029800 Salix brachista HOM05D003945 ORTHO05D004625 0.0e+00 1220.3 875 74.7
THA.LOC104806880 Tarenaya hassleriana HOM05D003945 ORTHO05D004625 0.0e+00 1219.9 819 77.5
VMungo1309G1712 Vigna mungo HOM05D003945 ORTHO05D004625 0.0e+00 1219.1 822 77.4
Lalb_Chr22g0355401 Lupinus albus HOM05D003945 ORTHO05D004625 0.0e+00 1218.4 823 76.2
EL10Ac1g01765 Beta vulgaris HOM05D003945 ORTHO05D004625 0.0e+00 1215.7 814 76.7
Peaxi162Scf00057g01112 Petunia axillaris HOM05D003945 ORTHO05D004625 0.0e+00 1215.3 838 77.2
Gohir.D05G262200 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1213.4 824 76.5
AUR62041666 Chenopodium quinoa HOM05D003945 ORTHO05D004625 0.0e+00 1213.0 845 74.6
Gohir.A05G260400 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1212.6 824 77.4
MBI16_g13147_MAGBIO Magnolia biondii HOM05D003945 ORTHO05D004625 0.0e+00 1212.6 822 75.8
PSO675G7084 Papaver somniferum HOM05D003945 ORTHO05D004625 0.0e+00 1212.2 821 76.1
DCAR_012756 Daucus carota HOM05D003945 ORTHO05D004625 0.0e+00 1211.8 815 77.1
PSO541G5148 Papaver somniferum HOM05D003945 ORTHO05D004625 0.0e+00 1210.7 821 76.1
Oeu009604.1 Olea europaea HOM05D003945 ORTHO05D004625 0.0e+00 1206.8 860 73.7
MSTRG.1299 Avicennia marina HOM05D003945 ORTHO05D004625 0.0e+00 1202.6 823 75.0
Nn1g05109 Nelumbo nucifera HOM05D003945 ORTHO05D004625 0.0e+00 1199.5 823 76.7
DCAR_019505 Daucus carota HOM05D003945 ORTHO05D004625 0.0e+00 1197.6 824 75.5
vmacro21611 Vaccinium macrocarpon HOM05D003945 ORTHO05D004625 0.0e+00 1197.2 834 76.4
Ah.11g043210 Amaranthus hybridus HOM05D003945 ORTHO05D004625 0.0e+00 1193.7 818 75.3
AL8G18650 Arabidopsis lyrata HOM05D003945 ORTHO05D004625 0.0e+00 1193.3 816 76.1
Thhalv10022547m.g Eutrema salsugineum HOM05D003945 ORTHO05D004625 0.0e+00 1189.5 819 75.2
AT5G42620 Arabidopsis thaliana HOM05D003945 ORTHO05D004625 0.0e+00 1188.7 814 76.0
BcaC02g10772 Brassica carinata HOM05D003945 ORTHO05D004625 0.0e+00 1186.4 815 76.2
C04p25260 Brassica napus HOM05D003945 ORTHO05D004625 0.0e+00 1186.4 815 76.2
BolC4t24032H Brassica oleracea HOM05D003945 ORTHO05D004625 0.0e+00 1186.4 815 76.2
Dinv36042 Davidia involucrata HOM05D003945 ORTHO05D004625 0.0e+00 1186.4 765 80.8
ATR0733G077 Amborella trichopoda HOM05D003945 ORTHO05D004625 0.0e+00 1185.6 778 77.4
Carub.0008s0641 Capsella rubella HOM05D003945 ORTHO05D004625 0.0e+00 1181.8 820 74.3
BcaC06g31752 Brassica carinata HOM05D003945 ORTHO05D004625 0.0e+00 1181.4 814 76.0
CARHR181510 Cardamine hirsuta HOM05D003945 ORTHO05D004625 0.0e+00 1181.4 822 75.1
Sp2g07000 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1179.5 819 75.6
SpUn0022_0010 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1179.5 819 75.6
SpUn0026_0070 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1179.5 819 75.6
SpUn0029_0030 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1179.5 819 75.6
Zm00001eb056220 Zea mays HOM05D003945 ORTHO05D004625 0.0e+00 1179.5 820 74.8
Aa31LG9G12670 Aethionema arabicum HOM05D003945 ORTHO05D004625 0.0e+00 1178.7 820 74.1
CDE07G1908 Ceratophyllum demersum HOM05D003945 ORTHO05D004625 0.0e+00 1178.3 807 75.7
Os03g0731500 Oryza sativa ssp. japonica HOM05D003945 ORTHO05D004625 0.0e+00 1176.8 816 75.4
A06p48280 Brassica napus HOM05D003945 ORTHO05D004625 0.0e+00 1176.0 812 75.9
BraA06t27697Z Brassica rapa HOM05D003945 ORTHO05D004625 0.0e+00 1175.2 812 75.9
Lj4C783T17 Lonicera japonica HOM05D003945 ORTHO05D004625 0.0e+00 1174.5 862 72.4
CDE04G0514 Ceratophyllum demersum HOM05D003945 ORTHO05D004625 0.0e+00 1171.4 813 74.8
SGA_v2.0_scaffold48G18049 Striga asiatica HOM05D003945 ORTHO05D004625 0.0e+00 1168.3 820 70.1
MELO3C010920.2 Cucumis melo HOM05D003945 ORTHO05D004625 0.0e+00 1161.4 854 70.1
Glyma.17G248400 Glycine max HOM05D003945 ORTHO05D004625 0.0e+00 1157.5 754 79.3
Hund17646 Selenicereus undatus HOM05D003945 ORTHO05D004625 0.0e+00 1156.4 806 73.4
Atru.chr13.549 Acer truncatum HOM05D003945 ORTHO05D004625 0.0e+00 1155.2 850 72.8
Gohir.A05G196700 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1155.2 824 73.7
Medtr1g021950 Medicago truncatula HOM05D003945 ORTHO05D004625 0.0e+00 1146.7 817 73.3
SalBow8G4281 Salvia bowleyana HOM05D003945 ORTHO05D004625 0.0e+00 1146.3 812 73.9
Migut.C00687 Erythranthe guttata HOM05D003945 ORTHO05D004625 0.0e+00 1143.6 827 73.0
SEGI_23274 Sequoiadendron giganteum HOM05D003945 ORTHO05D004625 0.0e+00 1143.6 817 72.7
Sc02g0006540 Simmondsia chinensis HOM05D003945 ORTHO05D004625 0.0e+00 1126.3 759 76.9
Phvul.001G016500 Phaseolus vulgaris HOM05D003945 ORTHO05D004625 0.0e+00 1123.2 692 81.5
SGA_v2.0_scaffold24G10266 Striga asiatica HOM05D003945 ORTHO05D004625 0.0e+00 1111.3 883 67.8
Ca_13337_v3 Cicer arietinum L. HOM05D003945 ORTHO05D004625 0.0e+00 1110.5 822 71.8
Mapoly0001s0355 Marchantia polymorpha HOM05D003945 ORTHO05D004625 0.0e+00 1105.5 814 70.0
Ca_15527_v3 Cicer arietinum L. HOM05D003945 ORTHO05D004625 0.0e+00 1100.5 821 73.3
Pp3c15_10300 Physcomitrium patens HOM05D003945 ORTHO05D004625 0.0e+00 1088.9 812 69.7
SEGI_40605 Sequoiadendron giganteum HOM05D003945 ORTHO05D004625 0.0e+00 1085.5 810 70.4
Pp3c9_8900 Physcomitrium patens HOM05D003945 ORTHO05D004625 0.0e+00 1083.9 812 69.1
Rhsim06G0036600 Rhododendron simsii HOM05D003945 ORTHO05D004625 8.4e-311 1070.1 735 77.1
TPR.G15756 Trifolium pratense HOM05D003945 ORTHO05D004625 7.2e-310 1067.0 768 70.7
Oeu019083.2 Olea europaea HOM05D003945 ORTHO05D004625 1.8e-289 999.2 817 67.3
CSS0002441 Camellia sinensis var. sinensis HOM05D003945 ORTHO05D004625 4.4e-267 924.9 596 76.5
AagrBONN_evm.TU.Sc2ySwM_228.1369 Anthoceros agrestis HOM05D003945 ORTHO05D004625 7.8e-264 914.1 600 72.3
COL.COLO4_26375 Corchorus olitorius HOM05D003945 ORTHO05D004625 2.1e-245 852.8 527 81.6
SHI08218 Sapria himalayana HOM05D003945 ORTHO05D004625 1.2e-240 837.0 554 75.1
ClCG08G015350 Citrullus lanatus HOM05D003945 ORTHO05D004625 3.9e-239 832.0 536 80.2
TAR625G1327 Trochodendron aralioides HOM05D003945 ORTHO05D004625 8.7e-239 830.9 815 59.4
TAR625G0556 Trochodendron aralioides HOM05D003945 ORTHO05D004625 1.7e-165 587.4 711 51.1
unitig_899.g15618 Utricularia gibba HOM05D003945 ORTHO05D004625 1.1e-145 521.5 444 61.3
Actinidia15302 Actinidia chinensis HOM05D003945 ORTHO05D004625 4.9e-133 479.6 352 77.0
Actinidia15303 Actinidia chinensis HOM05D003945 ORTHO05D004625 3.2e-124 450.3 312 72.8
unitig_899.g15619 Utricularia gibba HOM05D003945 ORTHO05D004625 7.6e-110 402.5 318 73.3
HanXRQChr02g0037151 Helianthus annuus HOM05D003945 ORTHO05D004625 1.1e-103 382.1 270 73.0
TAR625G0675 Trochodendron aralioides HOM05D003945 ORTHO05D004625 5.3e-95 353.2 397 51.9
TAR625G1534 Trochodendron aralioides HOM05D003945 ORTHO05D004625 8.8e-82 309.3 581 42.7
Pp3c1_5980 Physcomitrium patens HOM05D003945 ORTHO05D004625 1.4e-58 232.3 156 75.6
arahy.Tifrunner.gnm1.ann1.URD35Y Arachis hypogaea HOM05D003945 ORTHO05D004625 4.4e-49 200.7 133 70.7
SGA_v2.0_scaffold18G08518 Striga asiatica HOM05D003945 ORTHO05D004625 6.2e-43 180.3 165 56.4
CBR_g2789 Chara braunii HOM05D003945 ORTHO05D004625 2.1e-35 155.2 477 28.9
PRCOL_00006675 Prasinoderma coloniale HOM05D003945 ORTHO05D004625 6.4e-32 143.7 457 28.4
PRCOL_00003766 Prasinoderma coloniale HOM05D003945 ORTHO05D004625 7.8e-30 136.7 463 27.2
DCAR_031552 Daucus carota HOM05D003945 ORTHO05D004625 3.9e-29 134.4 76 81.6
Cre01.g001400 Chlamydomonas reinhardtii HOM05D003945 ORTHO05D004625 8.1e-27 126.7 440 28.2
CiPaw.15G072700 Carya illinoinensis HOM05D003945 ORTHO05D004625 6.8e-26 123.6 62 90.3
PRCOL_00001495 Prasinoderma coloniale HOM05D003945 ORTHO05D004625 1.7e-24 119.0 469 27.5
Pp3c1_5940 Physcomitrium patens HOM05D003945 ORTHO05D004625 9.2e-23 113.2 96 60.4
TAR625G0971 Trochodendron aralioides HOM05D003945 ORTHO05D004625 1.7e-16 92.4 105 54.3
TPR.G27891 Trifolium pratense HOM05D003945 ORTHO05D004625 3.8e-16 91.3 61 72.1
CBR_g38919 Chara braunii HOM05D000019 ORTHO05D000353 8.4e-16 90.1 220 31.4
CBR_g32472 Chara braunii HOM05D000019 ORTHO05D000002 7.1e-15 87.0 266 27.1
SGA_v2.0_scaffold210G42079 Striga asiatica HOM05D003945 ORTHO05D004625 3.0e-13 81.6 145 39.3
arahy.Tifrunner.gnm1.ann1.4NEG3Q Arachis hypogaea HOM05D003945 ORTHO05D004625 3.6e-11 74.7 83 48.2
CBR_g37162 Chara braunii HOM05D000019 ORTHO05D000048 4.9e-08 64.3 70 45.7
CBR_g38920 Chara braunii HOM05D003945 ORTHO05D004625 2.4e-07 62.0 126 31.7
Lsat_1_v5_gn_5_96440 Lactuca sativa HOM05D003945 ORTHO05D004625 2.7e-06 58.5 38 73.7


User provided reference genes

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