Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA232G0063 Erigeron canadensis HOM05D001960 ORTHO05D007725 1.5e-203 712.6 346 100.0
ECA232G3528 Erigeron canadensis HOM05D001960 ORTHO05D007725 4.9e-199 697.6 374 92.5
HanXRQChr09g0265611 Helianthus annuus HOM05D001960 ORTHO05D007725 1.1e-185 653.3 374 85.6
Lsat_1_v5_gn_4_179920 Lactuca sativa HOM05D001960 ORTHO05D007725 1.9e-182 642.5 374 84.8
CSS0006137 Camellia sinensis var. sinensis HOM05D001960 ORTHO05D007725 3.6e-170 601.7 374 77.5
CSS0036057 Camellia sinensis var. sinensis HOM05D001960 ORTHO05D007725 3.6e-170 601.7 374 77.5
Atru.chr8.1915 Acer truncatum HOM05D001960 ORTHO05D007725 6.9e-169 597.4 378 76.5
THA.LOC104823928 Tarenaya hassleriana HOM05D001960 ORTHO05D007725 6.9e-169 597.4 373 76.9
DCAR_006720 Daucus carota HOM05D001960 ORTHO05D007725 7.6e-168 594.0 377 75.9
QL02p080348 Quercus lobata HOM05D001960 ORTHO05D007725 9.9e-168 593.6 377 75.3
MELO3C021973.2 Cucumis melo HOM05D001960 ORTHO05D007725 2.2e-167 592.4 376 75.3
CsaV3_5G037870 Cucumis sativus L. HOM05D001960 ORTHO05D007725 2.2e-167 592.4 376 75.3
CANSAT64G2224 Cannabis sativa HOM05D001960 ORTHO05D007725 4.9e-167 591.3 377 77.2
TAR371G1229 Trochodendron aralioides HOM05D001960 ORTHO05D007725 1.4e-166 589.7 378 74.9
Gohir.D04G050500 Gossypium hirsutum HOM05D001960 ORTHO05D007725 1.9e-166 589.3 378 75.1
Gorai.012G056000 Gossypium raimondii HOM05D001960 ORTHO05D007725 3.2e-166 588.6 378 75.1
CiPaw.03G030400 Carya illinoinensis HOM05D001960 ORTHO05D007725 4.2e-166 588.2 376 76.1
Cfa007507 Carpinus fangiana HOM05D001960 ORTHO05D007725 5.4e-166 587.8 378 75.1
Sabra17G0069200 Salix brachista HOM05D001960 ORTHO05D007725 7.1e-166 587.4 378 75.1
Thhalv10004119m.g Eutrema salsugineum HOM05D001960 ORTHO05D007725 1.2e-165 586.6 374 73.5
Manes.17G020800 Manihot esculenta HOM05D001960 ORTHO05D007725 1.2e-165 586.6 379 76.3
BcaC06g30901 Brassica carinata HOM05D001960 ORTHO05D007725 2.7e-165 585.5 375 73.9
Cc01_g00810 Coffea canephora HOM05D001960 ORTHO05D007725 4.6e-165 584.7 374 74.6
Aa31LG2G4510 Aethionema arabicum HOM05D001960 ORTHO05D007725 7.8e-165 583.9 379 73.4
MSTRG.15488 Avicennia marina HOM05D001960 ORTHO05D007725 1.0e-164 583.6 378 75.9
BcaC06g33634 Brassica carinata HOM05D001960 ORTHO05D007725 1.0e-164 583.6 374 73.3
Migut.K01335 Erythranthe guttata HOM05D001960 ORTHO05D007725 1.0e-164 583.6 376 75.0
Sp2g17340 Schrenkiella parvula HOM05D001960 ORTHO05D007725 1.0e-164 583.6 374 72.7
Gohir.A05G364200 Gossypium hirsutum HOM05D001960 ORTHO05D007725 1.7e-164 582.8 378 74.9
TWI34G1416 Tripterygium wilfordii HOM05D001960 ORTHO05D007725 2.3e-164 582.4 378 74.1
GSVIVG01032604001 Vitis vinifera HOM05D001960 ORTHO05D007725 2.3e-164 582.4 378 75.1
AT3G28700 Arabidopsis thaliana HOM05D001960 ORTHO05D007725 3.0e-164 582.0 374 73.0
Carub.0005s0723 Capsella rubella HOM05D001960 ORTHO05D007725 3.0e-164 582.0 374 73.0
Potri.017G077000 Populus trichocarpa HOM05D001960 ORTHO05D007725 3.0e-164 582.0 378 74.9
Thecc.04G074100 Theobroma cacao HOM05D001960 ORTHO05D007725 3.9e-164 581.6 376 75.0
Actinidia06068 Actinidia chinensis HOM05D001960 ORTHO05D007725 5.1e-164 581.3 378 74.9
AL5G18340 Arabidopsis lyrata HOM05D001960 ORTHO05D007725 5.1e-164 581.3 374 73.5
C07p37650 Brassica napus HOM05D001960 ORTHO05D004348 8.7e-164 580.5 373 72.9
BolC7t44281H Brassica oleracea HOM05D001960 ORTHO05D007725 8.7e-164 580.5 373 72.9
CARHR286600 Cardamine hirsuta HOM05D001960 ORTHO05D007725 1.5e-163 579.7 374 72.7
Nn3g17123 Nelumbo nucifera HOM05D001960 ORTHO05D007725 1.5e-163 579.7 378 73.3
Nitab4.5_0002265g0270 Nicotiana tabacum HOM05D001960 ORTHO05D007725 1.5e-163 579.7 378 74.9
Ciclev10011611m.g Citrus clementina HOM05D001960 ORTHO05D007725 4.3e-163 578.2 378 74.1
Psat7g177520 Pisum sativum HOM05D001960 ORTHO05D007725 4.3e-163 578.2 377 74.8
Lj7A401T79 Lonicera japonica HOM05D001960 ORTHO05D007725 5.6e-163 577.8 413 70.2
Glyma.11G099200 Glycine max HOM05D001960 ORTHO05D007725 7.3e-163 577.4 378 75.4
Hma1.2p1_1232F.1_g268880 Hydrangea macrophylla HOM05D001960 ORTHO05D007725 7.3e-163 577.4 377 75.3
arahy.Tifrunner.gnm1.ann1.57V2RC Arachis hypogaea HOM05D001960 ORTHO05D007725 9.6e-163 577.0 378 74.3
A06p40400 Brassica napus HOM05D001960 ORTHO05D004348 9.6e-163 577.0 373 72.9
BraA06t26958Z Brassica rapa HOM05D001960 ORTHO05D004348 9.6e-163 577.0 373 72.9
Nitab4.5_0000564g0320 Nicotiana tabacum HOM05D001960 ORTHO05D007725 9.6e-163 577.0 378 74.6
arahy.Tifrunner.gnm1.ann1.9ZMQ3R Arachis hypogaea HOM05D001960 ORTHO05D007725 1.3e-162 576.6 378 74.3
TPR.G17186 Trifolium pratense HOM05D001960 ORTHO05D007725 1.6e-162 576.2 378 74.6
Lj3g0011182 Lotus japonicus HOM05D001960 ORTHO05D007725 2.1e-162 575.9 379 74.7
SGA_v2.0_scaffold30G12523 Striga asiatica HOM05D001960 ORTHO05D007725 2.1e-162 575.9 378 74.1
ClCG09G018410 Citrullus lanatus HOM05D001960 ORTHO05D007725 6.2e-162 574.3 403 69.7
Phvul.011G027550 Phaseolus vulgaris HOM05D001960 ORTHO05D007725 8.1e-162 573.9 378 74.6
Oeu060916.1 Olea europaea HOM05D001960 ORTHO05D007725 2.4e-161 572.4 378 74.1
PGSC0003DMG400001411 Solanum tuberosum HOM05D001960 ORTHO05D007725 2.4e-161 572.4 378 73.8
FvH4_6g49351 Fragaria vesca HOM05D001960 ORTHO05D007725 3.1e-161 572.0 378 73.8
Haze_14586 Corylus avellana HOM05D001960 ORTHO05D007725 4.0e-161 571.6 414 68.4
SalBow1G8169 Salvia bowleyana HOM05D001960 ORTHO05D007725 4.0e-161 571.6 377 73.2
Sopen02g032390 Solanum pennellii HOM05D001960 ORTHO05D007725 6.9e-161 570.9 378 73.5
FAN05G4054 Fragaria x ananassa HOM05D001960 ORTHO05D007725 1.2e-160 570.1 378 73.5
CAN.G206.108 Capsicum annuum HOM05D001960 ORTHO05D007725 1.5e-160 569.7 378 74.1
PGR083G0481 Punica granatum HOM05D001960 ORTHO05D007725 1.5e-160 569.7 381 73.8
RhsimUnG0055000 Rhododendron simsii HOM05D001960 ORTHO05D007725 2.0e-160 569.3 379 74.4
PSO832G0234 Papaver somniferum HOM05D001960 ORTHO05D007725 3.4e-160 568.5 374 73.3
RcHm_v2.0_Chr2g0169211 Rosa chinensis HOM05D001960 ORTHO05D007725 3.4e-160 568.5 376 73.4
Solyc02g087640.3 Solanum lycopersicum HOM05D001960 ORTHO05D007725 3.4e-160 568.5 378 73.3
Eucgr.J02136 Eucalyptus grandis HOM05D001960 ORTHO05D007725 5.8e-160 567.8 378 72.2
Lalb_Chr19g0139461 Lupinus albus HOM05D001960 ORTHO05D007725 1.3e-159 566.6 380 72.1
Sed0013706 Sechium edule HOM05D001960 ORTHO05D007725 1.3e-159 566.6 377 72.9
VMungo1127G2029 Vigna mungo HOM05D001960 ORTHO05D007725 3.8e-159 565.1 378 72.5
MD17G1046800 Malus domestica HOM05D001960 ORTHO05D007725 8.4e-159 563.9 373 73.7
Os01g0588800 Oryza sativa ssp. japonica HOM05D001960 ORTHO05D007725 8.4e-159 563.9 376 72.3
Prupe.3G272300 Prunus persica HOM05D001960 ORTHO05D007725 1.1e-158 563.5 375 74.4
MD09G1045900 Malus domestica HOM05D001960 ORTHO05D007725 1.4e-158 563.1 373 74.0
Medtr4g075200 Medicago truncatula HOM05D001960 ORTHO05D007725 3.2e-158 562.0 378 72.5
Ca_19010_v3 Cicer arietinum L. HOM05D001960 ORTHO05D007725 5.4e-158 561.2 374 73.5
Sed0024340 Sechium edule HOM05D001960 ORTHO05D007725 1.2e-157 560.1 376 71.0
Aqoxy3G03264 Aquilegia oxysepala HOM05D001960 ORTHO05D007725 3.5e-157 558.5 376 71.5
FAN14G4702 Fragaria x ananassa HOM05D001960 ORTHO05D007725 3.5e-157 558.5 369 73.7
Ca_20945_v3 Cicer arietinum L. HOM05D001960 ORTHO05D007725 1.3e-156 556.6 378 73.0
FAN02G2179 Fragaria x ananassa HOM05D001960 ORTHO05D007725 2.3e-156 555.8 408 68.1
MBI15_g37231_MAGBIO Magnolia biondii HOM05D001960 ORTHO05D007725 1.9e-155 552.7 360 74.7
Oeu033340.1 Olea europaea HOM05D001960 ORTHO05D007725 7.4e-155 550.8 359 74.4
Hund13245 Selenicereus undatus HOM05D001960 ORTHO05D007725 1.6e-154 549.7 380 71.3
Sc10g0003830 Simmondsia chinensis HOM05D001960 ORTHO05D007725 2.1e-154 549.3 373 71.0
AUR62031644 Chenopodium quinoa HOM05D001960 ORTHO05D007725 4.8e-154 548.1 379 69.4
AUR62038879 Chenopodium quinoa HOM05D001960 ORTHO05D007725 1.3e-151 540.0 392 67.3
ATR1120G150 Amborella trichopoda HOM05D001960 ORTHO05D007725 6.4e-151 537.7 381 69.8
EL10Ac2g03435 Beta vulgaris HOM05D001960 ORTHO05D007725 4.2e-150 535.0 379 69.9
Ah.12g065370 Amaranthus hybridus HOM05D001960 ORTHO05D007725 5.5e-150 534.6 393 67.4
Zm00001eb357440 Zea mays HOM05D001960 ORTHO05D007725 1.0e-148 530.4 361 70.4
BcaC04g23865 Brassica carinata HOM05D001960 ORTHO05D004348 3.0e-148 528.9 348 71.0
Dinv33716 Davidia involucrata HOM05D001960 ORTHO05D007725 1.1e-147 526.9 340 75.6
HPP92_022934 Vanilla planifolia HOM05D001960 ORTHO05D007725 9.6e-147 523.9 386 65.8
HPP92_022922 Vanilla planifolia HOM05D001960 ORTHO05D007725 2.2e-143 512.7 378 66.7
PSO591G0496 Papaver somniferum HOM05D001960 ORTHO05D007725 1.5e-139 500.0 346 69.9
Peaxi162Scf00129g00533 Petunia axillaris HOM05D001960 ORTHO05D007725 1.5e-139 500.0 378 66.4
vmacro05739 Vaccinium macrocarpon HOM05D001960 ORTHO05D007725 3.3e-139 498.8 375 68.0
unitig_747.g21836 Utricularia gibba HOM05D001960 ORTHO05D007725 3.7e-138 495.4 346 68.5
C09p03940 Brassica napus HOM05D001960 ORTHO05D007725 6.9e-137 491.1 373 63.5
SEGI_03019 Sequoiadendron giganteum HOM05D001960 ORTHO05D007725 2.9e-135 485.7 374 63.4
CDE05G2812 Ceratophyllum demersum HOM05D001960 ORTHO05D007725 3.0e-132 475.7 380 64.5
BolC9t53325H Brassica oleracea HOM05D001960 ORTHO05D007725 3.3e-131 472.2 362 63.5
COL.COLO4_25201 Corchorus olitorius HOM05D001960 ORTHO05D007725 9.7e-131 470.7 378 64.6
Pp3c8_16780 Physcomitrium patens HOM05D001960 ORTHO05D007725 2.6e-128 462.6 392 58.4
Mapoly0027s0012 Marchantia polymorpha HOM05D001960 ORTHO05D007725 5.9e-128 461.5 379 62.3
Hma1.2p1_1232F.1_g268890 Hydrangea macrophylla HOM05D001960 ORTHO05D007725 5.1e-124 448.4 255 82.7
Dinv34989 Davidia involucrata HOM05D001960 ORTHO05D007725 3.7e-122 442.2 326 68.7
C04p40510 Brassica napus HOM05D001960 ORTHO05D007725 5.9e-120 434.9 282 72.0
BolC4t25631H Brassica oleracea HOM05D001960 ORTHO05D007725 5.9e-120 434.9 282 72.0
AagrBONN_evm.TU.Sc2ySwM_368.2217 Anthoceros agrestis HOM05D001960 ORTHO05D007725 8.0e-117 424.5 405 53.8
C05p44890 Brassica napus HOM05D001960 ORTHO05D007725 9.1e-105 384.4 295 63.4
C08p31240 Brassica napus HOM05D001960 ORTHO05D007725 1.6e-104 383.6 270 67.4
SMO200G0063 Selaginella moellendorffii HOM05D001960 ORTHO05D007725 1.3e-103 380.6 391 52.7
BolC8t50105H Brassica oleracea HOM05D001960 ORTHO05D007725 8.5e-103 377.9 255 71.0
BcaC02g09250 Brassica carinata HOM05D001960 ORTHO05D007725 3.2e-102 375.9 249 71.1
C08p24890 Brassica napus HOM05D001960 ORTHO05D007725 8.0e-101 371.3 279 65.6
Ca_19017_v3 Cicer arietinum L. HOM05D000077 ORTHO05D002511 1.2e-93 347.4 344 55.5
HPP92_022944 Vanilla planifolia HOM05D001960 ORTHO05D007725 6.1e-85 318.5 208 72.6
MCO09G443 Micromonas commoda HOM05D001960 ORTHO05D007725 3.5e-80 302.8 383 43.9
CBR_g40650 Chara braunii HOM05D001960 ORTHO05D007725 3.5e-64 249.6 280 47.1
SHI22231 Sapria himalayana HOM05D001960 ORTHO05D007725 1.4e-57 227.6 234 52.6
Cre02.g096400 Chlamydomonas reinhardtii HOM05D001960 ORTHO05D007725 7.6e-51 205.3 571 30.3
Dinv34987 Davidia involucrata HOM05D001960 ORTHO05D007725 3.9e-47 193.0 110 81.8
Cfa026330 Carpinus fangiana HOM05D001960 ORTHO05D007725 3.9e-39 166.4 457 30.2
Migut.K01334 Erythranthe guttata HOM05D001960 ORTHO05D007725 1.4e-33 147.9 116 65.5
AUR62031616 Chenopodium quinoa HOM05D000372 ORTHO05D002769 4.8e-29 132.9 82 70.7
Actinidia23575 Actinidia chinensis HOM05D001960 ORTHO05D007725 1.8e-23 114.4 107 56.1
A05p31150 Brassica napus HOM05D001960 ORTHO05D033473 1.8e-23 114.4 69 78.3
CDE05G0334 Ceratophyllum demersum HOM05D000115 ORTHO05D000645 1.1e-20 105.1 60 75.0
BraA02t06070Z Brassica rapa HOM05D001960 ORTHO05D014930 1.8e-15 87.8 73 56.2
C04p14730 Brassica napus HOM05D001960 ORTHO05D014930 2.3e-15 87.4 69 56.5
BcaC02g11495 Brassica carinata HOM05D001960 ORTHO05D014930 3.0e-15 87.0 68 57.4
A01p26160 Brassica napus HOM05D001960 ORTHO05D014930 3.0e-15 87.0 69 56.5
BolC3t20150H Brassica oleracea HOM05D001960 ORTHO05D014930 3.0e-15 87.0 69 56.5
HPP92_003669 Vanilla planifolia HOM05D001960 ORTHO05D007725 1.1e-14 85.1 69 63.8
A05p31140 Brassica napus HOM05D001960 ORTHO05D042754 2.0e-14 84.3 59 62.7
BolC5t33816H Brassica oleracea HOM05D001960 ORTHO05D014930 2.0e-14 84.3 69 53.6
BraA05t21956Z Brassica rapa HOM05D001960 ORTHO05D042754 2.0e-14 84.3 59 62.7
BcaC05g28941 Brassica carinata HOM05D001960 ORTHO05D014930 2.5e-14 84.0 68 54.4
C07p16020 Brassica napus HOM05D001960 ORTHO05D014930 5.7e-14 82.8 60 60.0
C07p16060 Brassica napus HOM05D001960 ORTHO05D021151 5.7e-14 82.8 60 60.0
Hma1.2p1_1232F.1_g268870 Hydrangea macrophylla HOM05D001960 ORTHO05D014729 5.3e-12 76.3 38 89.5
Medtr5g075800 Medicago truncatula HOM05D001960 ORTHO05D258834 2.0e-11 74.3 85 51.8
HPP92_017638 Vanilla planifolia HOM05D003031 ORTHO05D003371 2.5e-09 67.4 39 76.9
Dinv06509 Davidia involucrata HOM05D001960 ORTHO05D014729 2.3e-07 60.8 30 90.0
Dinv25076 Davidia involucrata HOM05D001960 ORTHO05D033473 3.0e-07 60.5 41 68.3


User provided reference genes

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