Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA220G0002 Erigeron canadensis HOM05D004696 ORTHO05D005645 9.1e-134 480.3 259 100.0
Lsat_1_v5_gn_1_39920 Lactuca sativa HOM05D004696 ORTHO05D005645 3.1e-81 305.8 184 83.2
HanXRQChr09g0238571 Helianthus annuus HOM05D004696 ORTHO05D005645 2.4e-78 296.2 184 81.5
Lsat_1_v5_gn_6_92581 Lactuca sativa HOM05D004696 ORTHO05D005645 1.1e-75 287.3 177 81.4
ECA248G3148 Erigeron canadensis HOM05D004696 ORTHO05D005645 3.4e-72 275.8 178 79.8
TAR629G2307 Trochodendron aralioides HOM05D004696 ORTHO05D005645 4.6e-69 265.4 190 70.0
Dinv29511 Davidia involucrata HOM05D004696 ORTHO05D005645 7.9e-69 264.6 184 72.8
Haze_00771 Corylus avellana HOM05D004696 ORTHO05D005645 1.0e-68 264.2 184 70.1
Cfa015727 Carpinus fangiana HOM05D004696 ORTHO05D005645 2.3e-68 263.1 184 70.7
Solyc05g053220.3 Solanum lycopersicum HOM05D004696 ORTHO05D005645 3.0e-68 262.7 178 70.2
Sopen05g031730 Solanum pennellii HOM05D004696 ORTHO05D005645 3.0e-68 262.7 178 70.2
CAN.G305.38 Capsicum annuum HOM05D004696 ORTHO05D005645 5.1e-68 261.9 178 70.2
PGSC0003DMG400027150 Solanum tuberosum HOM05D004696 ORTHO05D005645 6.7e-68 261.5 178 69.1
Migut.N00002 Erythranthe guttata HOM05D004696 ORTHO05D005645 1.1e-67 260.8 180 71.7
CSS0007787 Camellia sinensis var. sinensis HOM05D004696 ORTHO05D005645 1.5e-67 260.4 181 72.4
Dinv18020 Davidia involucrata HOM05D004696 ORTHO05D005645 5.6e-67 258.5 183 69.9
Sed0019137 Sechium edule HOM05D004696 ORTHO05D005645 2.8e-66 256.1 183 69.4
CiPaw.02G069300 Carya illinoinensis HOM05D004696 ORTHO05D005645 1.4e-65 253.8 184 67.4
TWI73G0566 Tripterygium wilfordii HOM05D004696 ORTHO05D005645 1.4e-65 253.8 184 67.9
CsaV3_6G008150 Cucumis sativus L. HOM05D004696 ORTHO05D005645 3.1e-65 252.7 184 67.9
Actinidia22921 Actinidia chinensis HOM05D004696 ORTHO05D005645 1.5e-64 250.4 177 70.1
Lalb_Chr17g0338851 Lupinus albus HOM05D004696 ORTHO05D005645 2.0e-64 250.0 185 65.9
MSTRG.24614 Avicennia marina HOM05D004696 ORTHO05D005645 4.5e-64 248.8 175 69.1
Manes.11G020900 Manihot esculenta HOM05D004696 ORTHO05D005645 4.5e-64 248.8 176 68.2
Phvul.003G045400 Phaseolus vulgaris HOM05D004696 ORTHO05D005645 4.5e-64 248.8 185 66.5
Atru.chr4.3144 Acer truncatum HOM05D004696 ORTHO05D005645 7.6e-64 248.1 178 69.1
ECA149G0001 Erigeron canadensis HOM05D004696 ORTHO05D005645 1.7e-63 246.9 180 76.7
Sc17g0002920 Simmondsia chinensis HOM05D004696 ORTHO05D005645 1.7e-63 246.9 188 65.4
Manes.03G211700 Manihot esculenta HOM05D004696 ORTHO05D005645 2.2e-63 246.5 183 65.0
Cpa.g.sc146.25 Carica papaya HOM05D004696 ORTHO05D005645 2.9e-63 246.1 186 66.1
PGR031G3538 Punica granatum HOM05D004696 ORTHO05D005645 2.9e-63 246.1 186 66.7
SGA_v2.0_scaffold49G18399 Striga asiatica HOM05D004696 ORTHO05D005645 4.9e-63 245.4 216 60.6
vmacro08011 Vaccinium macrocarpon HOM05D004696 ORTHO05D005645 6.5e-63 245.0 200 61.0
Glyma.01G218300 Glycine max HOM05D004696 ORTHO05D005645 3.2e-62 242.7 185 65.4
MD16G1136700 Malus domestica HOM05D004696 ORTHO05D005645 4.2e-62 242.3 178 65.2
Thecc.04G312600 Theobroma cacao HOM05D004696 ORTHO05D005645 5.5e-62 241.9 186 64.0
Eucgr.B03956 Eucalyptus grandis HOM05D004696 ORTHO05D005645 7.1e-62 241.5 185 64.9
QL06p014174 Quercus lobata HOM05D004696 ORTHO05D005645 7.1e-62 241.5 194 62.4
TWI09G0971 Tripterygium wilfordii HOM05D004696 ORTHO05D005645 7.1e-62 241.5 183 65.0
Phvul.010G140500 Phaseolus vulgaris HOM05D004696 ORTHO05D005645 9.3e-62 241.1 178 68.5
Prupe.1G105700 Prunus persica HOM05D004696 ORTHO05D005645 9.3e-62 241.1 187 64.7
Lalb_Chr10g0096421 Lupinus albus HOM05D004696 ORTHO05D005645 1.6e-61 240.4 185 65.4
Glyma.11G024900 Glycine max HOM05D004696 ORTHO05D005645 3.5e-61 239.2 184 64.7
Sabra02G0114900 Salix brachista HOM05D004696 ORTHO05D005645 3.5e-61 239.2 176 65.9
VMungo0331G1167 Vigna mungo HOM05D004696 ORTHO05D005645 3.5e-61 239.2 185 64.9
arahy.Tifrunner.gnm1.ann1.61U0KE Arachis hypogaea HOM05D004696 ORTHO05D005645 4.6e-61 238.8 215 57.2
Ciclev10005920m.g Citrus clementina HOM05D004696 ORTHO05D005645 4.6e-61 238.8 183 63.9
CANSAT78G0332 Cannabis sativa HOM05D004696 ORTHO05D005645 6.0e-61 238.4 182 63.7
Lj2g0021207 Lotus japonicus HOM05D004696 ORTHO05D005645 6.0e-61 238.4 185 63.2
AUR62020507 Chenopodium quinoa HOM05D004696 ORTHO05D005645 7.9e-61 238.0 176 66.5
Glyma.14G125600 Glycine max HOM05D004696 ORTHO05D005645 1.0e-60 237.7 185 63.8
Potri.008G206400 Populus trichocarpa HOM05D004696 ORTHO05D005645 1.0e-60 237.7 176 65.3
Ah.16g105210 Amaranthus hybridus HOM05D004696 ORTHO05D005645 1.3e-60 237.3 178 66.3
Psat7g133720 Pisum sativum HOM05D004696 ORTHO05D005645 1.8e-60 236.9 184 64.1
GSVIVG01017685001 Vitis vinifera HOM05D004696 ORTHO05D005645 1.8e-60 236.9 185 63.2
Duzib151G0078 Durio zibethinus HOM05D004696 ORTHO05D005645 2.3e-60 236.5 186 66.7
MD07G1065600 Malus domestica HOM05D004696 ORTHO05D005645 3.0e-60 236.1 184 63.0
Potri.010G002100 Populus trichocarpa HOM05D004696 ORTHO05D005645 3.0e-60 236.1 176 65.3
SalBow2G0725 Salvia bowleyana HOM05D001196 ORTHO05D005911 3.0e-60 236.1 174 65.5
CDE06G2579 Ceratophyllum demersum HOM05D005139 ORTHO05D006125 5.1e-60 235.3 183 63.9
MBI03_g01483_MAGBIO Magnolia biondii HOM05D004696 ORTHO05D005645 5.1e-60 235.3 183 64.5
Gohir.A02G058200 Gossypium hirsutum HOM05D004696 ORTHO05D005645 6.7e-60 235.0 190 62.6
Gorai.005G071900 Gossypium raimondii HOM05D004696 ORTHO05D005645 6.7e-60 235.0 190 62.6
Ah.06g192450 Amaranthus hybridus HOM05D004696 ORTHO05D005645 1.1e-59 234.2 185 62.2
Gohir.D02G064000 Gossypium hirsutum HOM05D004696 ORTHO05D005645 1.1e-59 234.2 190 62.6
arahy.Tifrunner.gnm1.ann1.NQRV37 Arachis hypogaea HOM05D004696 ORTHO05D005645 1.5e-59 233.8 194 61.9
EL10Ac4g08571 Beta vulgaris HOM05D004696 ORTHO05D005645 1.5e-59 233.8 175 66.9
unitig_8.g2889 Utricularia gibba HOM05D004696 ORTHO05D005645 1.9e-59 233.4 172 64.5
arahy.Tifrunner.gnm1.ann1.BY2PXQ Arachis hypogaea HOM05D004696 ORTHO05D005645 2.5e-59 233.0 194 61.3
Psat1g042400 Pisum sativum HOM05D004696 ORTHO05D005645 2.5e-59 233.0 186 62.4
Aqoxy4G02417 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 9.7e-59 231.1 180 63.9
MD13G1140700 Malus domestica HOM05D004696 ORTHO05D005645 9.7e-59 231.1 177 63.3
RcHm_v2.0_Chr4g0427441 Rosa chinensis HOM05D004696 ORTHO05D005645 9.7e-59 231.1 179 64.2
Aqoxy5G04183 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 1.3e-58 230.7 180 62.8
Lj4g0004970 Lotus japonicus HOM05D004696 ORTHO05D005645 1.6e-58 230.3 185 61.1
Medtr5g081850 Medicago truncatula HOM05D004696 ORTHO05D005645 2.2e-58 229.9 179 62.6
Sabra02G0116500 Salix brachista HOM05D004696 ORTHO05D005645 3.7e-58 229.2 196 59.2
Sabra08G0150400 Salix brachista HOM05D004696 ORTHO05D005645 4.8e-58 228.8 196 59.2
FvH4_4g21490 Fragaria vesca HOM05D004696 ORTHO05D005645 2.4e-57 226.5 177 64.4
FAN12G0616 Fragaria x ananassa HOM05D004696 ORTHO05D005645 4.1e-57 225.7 177 64.4
Cc03_g00150 Coffea canephora HOM05D004696 ORTHO05D005645 5.3e-57 225.3 198 58.1
Os02g0730500 Oryza sativa ssp. japonica HOM05D004696 ORTHO05D005645 9.0e-57 224.6 177 64.4
Oeu022705.1 Olea europaea HOM05D004696 ORTHO05D005645 1.2e-56 224.2 169 66.3
FAN07G1680 Fragaria x ananassa HOM05D004696 ORTHO05D005645 2.6e-56 223.0 179 62.6
THA.LOC104827108 Tarenaya hassleriana HOM05D004696 ORTHO05D005645 3.4e-56 222.6 186 58.1
Nitab4.5_0008086g0030 Nicotiana tabacum HOM05D004696 ORTHO05D005645 2.9e-55 219.5 181 61.3
PSO782G4648 Papaver somniferum HOM05D004696 ORTHO05D005645 2.9e-55 219.5 176 63.1
Zm00001eb189970 Zea mays HOM05D004696 ORTHO05D005645 2.9e-55 219.5 185 62.2
PSO478G3068 Papaver somniferum HOM05D004696 ORTHO05D005645 2.5e-54 216.5 176 61.9
Cc00_g15640 Coffea canephora HOM05D004696 ORTHO05D005645 3.2e-54 216.1 196 56.6
Oeu037627.2 Olea europaea HOM05D004696 ORTHO05D005645 1.2e-53 214.2 280 45.0
AUR62015697 Chenopodium quinoa HOM05D004696 ORTHO05D005645 3.6e-53 212.6 153 66.7
Hma1.2p1_2234F.1_g317690 Hydrangea macrophylla HOM05D004696 ORTHO05D000003 3.6e-53 212.6 259 49.8
TPR.G8061 Trifolium pratense HOM05D004696 ORTHO05D005645 3.6e-53 212.6 187 57.8
Peaxi162Scf00164g00414 Petunia axillaris HOM05D004696 ORTHO05D005645 7.9e-53 211.5 178 60.7
Lj6C700T16 Lonicera japonica HOM05D004696 ORTHO05D005645 1.0e-52 211.1 184 60.3
PSO832G1751 Papaver somniferum HOM05D004696 ORTHO05D005645 8.8e-52 208.0 183 57.4
PSO063G5897 Papaver somniferum HOM05D004696 ORTHO05D005645 1.1e-51 207.6 179 58.1
Carub.0002s0865 Capsella rubella HOM05D004696 ORTHO05D005645 3.3e-51 206.1 179 58.1
Aqoxy3G02973 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 2.2e-50 203.4 146 67.1
AT5G30495 Arabidopsis thaliana HOM05D004696 ORTHO05D005645 2.2e-50 203.4 185 56.2
AL6G41010 Arabidopsis lyrata HOM05D004696 ORTHO05D005645 8.2e-50 201.4 185 56.2
SGA_v2.0_scaffold69G23291 Striga asiatica HOM05D004696 ORTHO05D005645 8.2e-50 201.4 178 59.0
BcaB04g19639 Brassica carinata HOM05D004696 ORTHO05D005645 1.4e-49 200.7 175 57.7
BcaC04g23715 Brassica carinata HOM05D004696 ORTHO05D005645 1.4e-49 200.7 176 56.2
AT1G54770 Arabidopsis thaliana HOM05D004696 ORTHO05D005645 4.1e-49 199.1 171 57.9
Sp2g19960 Schrenkiella parvula HOM05D004696 ORTHO05D005645 7.7e-48 194.9 185 53.5
CARHR185500 Cardamine hirsuta HOM05D004696 ORTHO05D005645 1.0e-47 194.5 183 53.0
A09p05040 Brassica napus HOM05D004696 ORTHO05D005645 1.4e-46 190.7 176 54.5
BraA09t36143Z Brassica rapa HOM05D004696 ORTHO05D005645 1.4e-46 190.7 176 54.5
C09p05450 Brassica napus HOM05D004696 ORTHO05D005645 4.2e-46 189.1 176 54.0
BolC9t53474H Brassica oleracea HOM05D004696 ORTHO05D005645 4.2e-46 189.1 176 54.0
Rhsim04G0248200 Rhododendron simsii HOM05D004696 ORTHO05D005645 5.5e-46 188.7 189 55.6
ClCG06G002080 Citrullus lanatus HOM05D004696 ORTHO05D005645 9.4e-46 188.0 177 56.5
Aa31LG2G12130 Aethionema arabicum HOM05D004696 ORTHO05D005645 1.6e-45 187.2 185 52.4
arahy.Tifrunner.gnm1.ann1.09FGJA Arachis hypogaea HOM05D004696 ORTHO05D005645 6.1e-45 185.3 185 54.6
Thhalv10005420m.g Eutrema salsugineum HOM05D004696 ORTHO05D005645 6.7e-44 181.8 212 47.6
Nitab4.5_0000745g0120 Nicotiana tabacum HOM05D004696 ORTHO05D005645 6.7e-44 181.8 181 53.6
Mapoly0084s0020 Marchantia polymorpha HOM05D004696 ORTHO05D005645 2.2e-42 176.8 174 52.9
Nn3g16891 Nelumbo nucifera HOM05D004696 ORTHO05D005645 4.8e-42 175.6 126 65.1
SHI04008 Sapria himalayana HOM05D004696 ORTHO05D005645 4.8e-42 175.6 160 57.5
Actinidia01063 Actinidia chinensis HOM05D004696 ORTHO05D005645 3.1e-41 172.9 172 54.7
Ca_06214_v3 Cicer arietinum L. HOM05D004696 ORTHO05D005645 3.1e-41 172.9 186 51.1
Pp3c7_450 Physcomitrium patens HOM05D004696 ORTHO05D005645 3.1e-41 172.9 181 53.0
SEGI_16783 Sequoiadendron giganteum HOM05D004696 ORTHO05D005645 4.1e-41 172.6 191 51.3
SEGI_41631 Sequoiadendron giganteum HOM05D004696 ORTHO05D005645 4.1e-41 172.6 191 51.3
Ca_05928_v3 Cicer arietinum L. HOM05D004696 ORTHO05D005645 5.3e-41 172.2 186 51.6
SMO139G0013 Selaginella moellendorffii HOM05D004696 ORTHO05D005645 7.2e-38 161.8 169 49.7
MELO3C035238.2 Cucumis melo HOM05D004696 ORTHO05D005645 4.7e-37 159.1 159 54.1
CBR_g41139 Chara braunii HOM05D004696 ORTHO05D005645 3.1e-33 146.4 132 50.0
ATR1127G170 Amborella trichopoda HOM05D004696 ORTHO05D005645 1.9e-30 137.1 121 57.9
CSS0022818 Camellia sinensis var. sinensis HOM05D004696 ORTHO05D005645 2.8e-26 123.2 98 65.3
RcHm_v2.0_Chr4g0427481 Rosa chinensis HOM05D004696 ORTHO05D005645 3.7e-26 122.9 97 59.8
AagrBONN_evm.TU.Sc2ySwM_368.1627 Anthoceros agrestis HOM05D004696 ORTHO05D005645 4.8e-26 122.5 107 55.1
HPP92_006011 Vanilla planifolia HOM05D004696 ORTHO05D005645 4.8e-26 122.5 121 50.4
Lj4g0014561 Lotus japonicus HOM05D004696 ORTHO05D005645 6.3e-26 122.1 87 65.5
CSS0046364 Camellia sinensis var. sinensis HOM05D004696 ORTHO05D005645 7.0e-25 118.6 96 62.5
Lj4g0016234 Lotus japonicus HOM05D004696 ORTHO05D005645 7.0e-25 118.6 83 66.3
Zm00001eb253530 Zea mays HOM05D004696 ORTHO05D005645 2.0e-24 117.1 87 69.0
MCO05G434 Micromonas commoda HOM05D004696 ORTHO05D005645 3.8e-23 112.8 146 41.8
Lj2g0010517 Lotus japonicus HOM05D004696 ORTHO05D005645 1.1e-22 111.3 135 51.1
BolC9t57816H Brassica oleracea HOM05D004696 ORTHO05D005645 1.8e-20 104.0 114 49.1
BcaC04g19932 Brassica carinata HOM05D004696 ORTHO05D005645 3.0e-20 103.2 114 48.2
PRCOL_00000839 Prasinoderma coloniale HOM05D004696 ORTHO05D005645 8.8e-20 101.7 157 36.9
COL.COLO4_34519 Corchorus olitorius HOM05D004696 ORTHO05D005645 5.7e-19 99.0 105 53.3
TAR371G0358 Trochodendron aralioides HOM05D004696 ORTHO05D005645 3.7e-18 96.3 90 57.8
Cfa024688 Carpinus fangiana HOM05D004696 ORTHO05D005645 8.3e-18 95.1 113 45.1
Lj2g0009432 Lotus japonicus HOM05D004696 ORTHO05D005645 8.3e-18 95.1 97 52.6
Zm00001eb026470 Zea mays HOM05D004696 ORTHO05D021106 2.7e-16 90.1 65 70.8
Cre03.g194150 Chlamydomonas reinhardtii HOM05D004696 ORTHO05D005645 5.9e-16 89.0 152 36.2
Zm00001eb219180 Zea mays HOM05D004696 ORTHO05D005645 5.5e-14 82.4 65 67.7
BcaB05g22696 Brassica carinata HOM05D004696 ORTHO05D005645 3.0e-12 76.6 124 37.1
Aqoxy5G04095 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 2.0e-11 73.9 53 69.8
QL04p080373 Quercus lobata HOM05D000023 ORTHO05D000014 8.3e-10 68.6 45 68.9
EL10Ac1g01076 Beta vulgaris HOM05D004696 ORTHO05D005645 1.4e-09 67.8 57 63.2
QL12p004065 Quercus lobata HOM05D004696 ORTHO05D005645 7.8e-08 62.0 66 53.0
CSS0030909 Camellia sinensis var. sinensis HOM05D004696 ORTHO05D005645 1.0e-07 61.6 96 41.7
Medtr7g074130 Medicago truncatula HOM05D004696 ORTHO05D005645 4.3e-06 56.2 63 47.6


User provided reference genes

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