Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA039G0015 Erigeron canadensis HOM05D001560 ORTHO05D004675 2.0e-97 359.0 170 100.0
ECA039G0026 Erigeron canadensis HOM05D001560 ORTHO05D004675 2.0e-97 359.0 170 100.0
HanXRQChr00c0055g0571471 Helianthus annuus HOM05D001560 ORTHO05D004675 5.0e-96 354.4 170 98.8
HanXRQChr12g0358671 Helianthus annuus HOM05D001560 ORTHO05D004675 5.0e-96 354.4 170 98.8
HanXRQMTg0579651 Helianthus annuus HOM05D001560 ORTHO05D004675 5.0e-96 354.4 170 98.8
Lj2P1224T99 Lonicera japonica HOM05D001560 ORTHO05D004675 1.2e-94 349.7 170 98.2
Lj2P1227T100 Lonicera japonica HOM05D001560 ORTHO05D004675 1.2e-94 349.7 170 98.2
Aa31csc239G40 Aethionema arabicum HOM05D001560 ORTHO05D004675 1.5e-92 342.8 170 97.1
BolSC28t60362H Brassica oleracea HOM05D001560 ORTHO05D004675 1.5e-92 342.8 170 97.1
BraSC48t46349Z Brassica rapa HOM05D001560 ORTHO05D004675 1.5e-92 342.8 170 97.1
Thhalv10022839m.g Eutrema salsugineum HOM05D001560 ORTHO05D004675 1.5e-92 342.8 170 97.1
Sp3g25870 Schrenkiella parvula HOM05D001560 ORTHO05D004675 1.5e-92 342.8 170 97.1
unitig_87.g28016 Utricularia gibba HOM05D001560 ORTHO05D004675 2.0e-92 342.4 170 96.5
ATMG00070 Arabidopsis thaliana HOM05D001560 ORTHO05D004675 3.3e-92 341.7 170 96.5
CARHR282620 Cardamine hirsuta HOM05D001560 ORTHO05D004675 3.3e-92 341.7 170 96.5
Dinv06677 Davidia involucrata HOM05D001560 ORTHO05D004675 4.3e-92 341.3 166 97.6
HanXRQChr02g0035261 Helianthus annuus HOM05D001560 ORTHO05D004675 5.7e-92 340.9 170 95.3
SalBow1G1852 Salvia bowleyana HOM05D001560 ORTHO05D004675 5.7e-92 340.9 170 95.9
BcaC09g49590 Brassica carinata HOM05D001560 ORTHO05D004675 7.4e-92 340.5 170 96.5
Migut.D01524 Erythranthe guttata HOM05D001560 ORTHO05D004675 9.7e-92 340.1 170 95.9
Gohir.A01G022400 Gossypium hirsutum HOM05D001560 ORTHO05D004675 1.3e-91 339.7 170 96.5
CANSAT16G0009 Cannabis sativa HOM05D001560 ORTHO05D004675 2.2e-91 339.0 170 95.3
MBI05_g23323_MAGBIO Magnolia biondii HOM05D001560 ORTHO05D004675 3.7e-91 338.2 170 95.3
Thhalv10002997m.g Eutrema salsugineum HOM05D001560 ORTHO05D004675 8.2e-91 337.0 170 95.9
RcHm_v2.0_Chr6g0257991 Rosa chinensis HOM05D001560 ORTHO05D004675 1.8e-90 335.9 170 95.3
RcHm_v2.0_MTg0498881 Rosa chinensis HOM05D001560 ORTHO05D004675 1.8e-90 335.9 170 95.3
DCAR_031657 Daucus carota HOM05D001560 ORTHO05D004675 3.1e-90 335.1 168 95.8
DCAR_032439 Daucus carota HOM05D001560 ORTHO05D004675 3.1e-90 335.1 168 95.8
LjContig00439g0006307 Lotus japonicus HOM05D001560 ORTHO05D004675 3.1e-90 335.1 170 95.3
LjContig00446g0014136 Lotus japonicus HOM05D001560 ORTHO05D004675 3.1e-90 335.1 170 95.3
Nn1g10115 Nelumbo nucifera HOM05D001560 ORTHO05D004675 3.1e-90 335.1 169 95.9
arahy.Tifrunner.gnm1.ann1.HAH5KR Arachis hypogaea HOM05D001560 ORTHO05D004675 5.3e-90 334.3 170 94.7
Lalb_Chr00c39g0409121 Lupinus albus HOM05D001560 ORTHO05D004675 6.9e-90 334.0 170 95.3
Lalb_Chr00c39g0409261 Lupinus albus HOM05D001560 ORTHO05D004675 6.9e-90 334.0 170 95.3
Lalb_Chr00c51g0413181 Lupinus albus HOM05D001560 ORTHO05D004675 6.9e-90 334.0 170 95.3
BcaC09g49591 Brassica carinata HOM05D001560 ORTHO05D004675 9.1e-90 333.6 167 95.8
CAN.G223.15 Capsicum annuum HOM05D001560 ORTHO05D004675 9.1e-90 333.6 170 94.7
CsaV3_UNG210330 Cucumis sativus L. HOM05D001560 ORTHO05D004675 2.0e-89 332.4 169 95.3
DCAR_032222 Daucus carota HOM05D001560 ORTHO05D004675 2.0e-89 332.4 168 95.2
Sed0020323 Sechium edule HOM05D001560 ORTHO05D004675 2.6e-89 332.0 169 94.7
SabraMtG0007900 Salix brachista HOM05D001560 ORTHO05D004675 7.7e-89 330.5 170 93.5
Solyc00g019950.1 Solanum lycopersicum HOM05D001560 ORTHO05D004675 7.7e-89 330.5 170 93.5
SGA_v2.0_scaffold245G44645 Striga asiatica HOM05D001560 ORTHO05D004675 1.0e-88 330.1 170 93.5
Potri.013G066660 Populus trichocarpa HOM05D001560 ORTHO05D004675 3.8e-88 328.2 170 92.9
Ah.10g027950 Amaranthus hybridus HOM05D001560 ORTHO05D004675 5.5e-87 324.3 167 92.2
Ah.02g118870 Amaranthus hybridus HOM05D001560 ORTHO05D004675 1.6e-86 322.8 167 91.6
CDE02G0735 Ceratophyllum demersum HOM05D001560 ORTHO05D004675 1.6e-86 322.8 168 92.3
Zm00001eb382940 Zea mays HOM05D001560 ORTHO05D004675 3.6e-86 321.6 170 91.2
SHI51143 Sapria himalayana HOM05D001560 ORTHO05D004675 4.7e-86 321.2 170 91.2
Medtr0212s0080 Medicago truncatula HOM05D001560 ORTHO05D004675 4.4e-84 314.7 164 92.1
Psat7g198960 Pisum sativum HOM05D001560 ORTHO05D004675 4.4e-84 314.7 164 92.1
SHI36380 Sapria himalayana HOM05D001560 ORTHO05D004675 5.7e-84 314.3 170 90.0
Ah.08g210720 Amaranthus hybridus HOM05D001560 ORTHO05D004675 7.4e-84 313.9 167 90.4
SHI33931 Sapria himalayana HOM05D001560 ORTHO05D004675 2.2e-83 312.4 163 92.0
SHI37164 Sapria himalayana HOM05D001560 ORTHO05D003613 2.8e-83 312.0 167 89.2
Cpa.g.sc38.8 Carica papaya HOM05D001560 ORTHO05D004675 1.4e-82 309.7 170 89.4
SHI42286 Sapria himalayana HOM05D000743 ORTHO05D004675 1.4e-82 309.7 166 90.4
Ah.10g028660 Amaranthus hybridus HOM05D001560 ORTHO05D004675 3.1e-82 308.5 158 93.0
Lsat_1_v5_gn_1_23980 Lactuca sativa HOM05D001560 ORTHO05D004675 7.7e-81 303.9 153 94.8
SHI48979 Sapria himalayana HOM05D001560 ORTHO05D004675 6.5e-80 300.8 166 87.3
SHI35320 Sapria himalayana HOM05D001560 ORTHO05D004675 1.4e-77 293.1 170 83.5
SHI36583 Sapria himalayana HOM05D001560 ORTHO05D004675 6.7e-77 290.8 169 85.2
Hma1.2p1_1099F.1_g256790 Hydrangea macrophylla HOM05D001560 ORTHO05D004675 2.0e-76 289.3 144 95.8
SHI37162 Sapria himalayana HOM05D001560 ORTHO05D004675 5.7e-76 287.7 164 86.0
Gorai.001G166700 Gossypium raimondii HOM05D007877 ORTHO05D009957 1.3e-75 286.6 144 95.8
Actinidia34872 Actinidia chinensis HOM05D001560 ORTHO05D004675 3.7e-75 285.0 146 94.5
SHI37161 Sapria himalayana HOM05D000743 ORTHO05D000580 1.8e-74 282.7 170 81.8
RhsimMtG0004600 Rhododendron simsii HOM05D001560 ORTHO05D004675 2.4e-74 282.3 141 96.5
RhsimMtG0006100 Rhododendron simsii HOM05D001560 ORTHO05D004675 2.4e-74 282.3 141 96.5
ECA238G3729 Erigeron canadensis HOM05D001560 ORTHO05D004675 5.3e-74 281.2 135 98.5
Peaxi162Scf01588g00002 Petunia axillaris HOM05D001560 ORTHO05D004675 5.3e-74 281.2 170 81.8
BolSC28t60305H Brassica oleracea HOM05D001560 ORTHO05D004675 1.0e-72 276.9 163 82.8
SHI54579 Sapria himalayana HOM05D001560 ORTHO05D004675 1.5e-71 273.1 138 95.7
HanXRQChr10g0297171 Helianthus annuus HOM05D001560 ORTHO05D004675 2.7e-70 268.9 172 80.8
SHI51556 Sapria himalayana HOM05D001560 ORTHO05D004675 1.4e-69 266.5 147 87.8
SHI49196 Sapria himalayana HOM05D001560 ORTHO05D004675 1.8e-69 266.2 135 94.1
SHI36971 Sapria himalayana HOM05D001560 ORTHO05D004675 1.7e-67 259.6 138 91.3
SHI43258 Sapria himalayana HOM05D001560 ORTHO05D004675 1.7e-67 259.6 138 91.3
Lalb_Chr00c21g0406161 Lupinus albus HOM05D001560 ORTHO05D004675 2.2e-67 259.2 170 78.8
SHI40934 Sapria himalayana HOM05D001560 ORTHO05D004675 1.1e-66 256.9 144 87.5
SHI37085 Sapria himalayana HOM05D001560 ORTHO05D004675 1.8e-66 256.1 132 92.4
SHI46062 Sapria himalayana HOM05D001560 ORTHO05D004675 2.0e-65 252.7 143 86.0
SHI52730 Sapria himalayana HOM05D001560 ORTHO05D004675 3.5e-65 251.9 141 85.8
SHI36016 Sapria himalayana HOM05D001560 ORTHO05D004675 5.9e-65 251.1 148 83.1
SHI35188 Sapria himalayana HOM05D001560 ORTHO05D004675 8.5e-64 247.3 131 90.1
SHI47572 Sapria himalayana HOM05D001560 ORTHO05D004675 9.5e-63 243.8 167 71.9
SHI53284 Sapria himalayana HOM05D001560 ORTHO05D004675 2.3e-61 239.2 136 86.8
CsaV3_5G015950 Cucumis sativus L. HOM05D001560 ORTHO05D004675 2.0e-60 236.1 130 89.2
SHI53856 Sapria himalayana HOM05D001560 ORTHO05D004675 9.2e-58 227.3 138 84.1
SHI35231 Sapria himalayana HOM05D001560 ORTHO05D004675 1.7e-56 223.0 127 85.8
SHI35332 Sapria himalayana HOM05D001560 ORTHO05D004675 1.9e-55 219.5 112 92.9
ECA041G0003 Erigeron canadensis HOM05D001560 ORTHO05D004675 7.3e-55 217.6 109 94.5
SHI50434 Sapria himalayana HOM05D001560 ORTHO05D004675 8.0e-54 214.2 133 81.2
SHI39080 Sapria himalayana HOM05D001560 ORTHO05D004675 1.4e-53 213.4 134 80.6
Dinv29327 Davidia involucrata HOM05D001560 ORTHO05D004675 1.5e-52 209.9 99 99.0
BolC1t03442H Brassica oleracea HOM05D001560 ORTHO05D004675 2.0e-52 209.5 132 80.3
Sopen00g002540 Solanum pennellii HOM05D001560 ORTHO05D004675 2.6e-52 209.1 114 89.5
CARHR287160 Cardamine hirsuta HOM05D001560 ORTHO05D004675 1.3e-51 206.8 99 98.0
CDE02G2746 Ceratophyllum demersum HOM05D001560 ORTHO05D004675 2.9e-51 205.7 138 75.4
C01p34750 Brassica napus HOM05D001560 ORTHO05D004675 6.4e-51 204.5 132 79.5
arahy.Tifrunner.gnm1.ann1.11DKXG Arachis hypogaea HOM05D001560 ORTHO05D004675 8.3e-51 204.1 100 96.0
arahy.Tifrunner.gnm1.ann1.E4X7TI Arachis hypogaea HOM05D001560 ORTHO05D004675 3.5e-49 198.7 97 95.9
Ca_22175_v3 Cicer arietinum L. HOM05D001560 ORTHO05D004675 4.6e-49 198.4 96 96.9
SHI42241 Sapria himalayana HOM05D001560 ORTHO05D004675 3.0e-48 195.7 115 85.2
Cre07.g327400 Chlamydomonas reinhardtii HOM05D001560 ORTHO05D004675 1.2e-46 190.3 145 61.4
SHI45393 Sapria himalayana HOM05D001560 ORTHO05D004675 1.6e-46 189.9 100 90.0
Solyc08g065620.1 Solanum lycopersicum HOM05D001560 ORTHO05D004675 3.6e-46 188.7 101 89.1
Haze_26224 Corylus avellana HOM05D001560 ORTHO05D004675 4.7e-46 188.3 146 59.6
BraSC177t45760Z Brassica rapa HOM05D001560 ORTHO05D004675 8.9e-45 184.1 115 80.9
SHI26652 Sapria himalayana HOM05D001560 ORTHO05D004675 4.9e-43 178.3 94 89.4
PGSC0003DMG400018984 Solanum tuberosum HOM05D001560 ORTHO05D004675 8.3e-43 177.6 99 85.9
Os12g0422971 Oryza sativa ssp. japonica HOM05D001560 ORTHO05D004675 7.8e-41 171.0 89 91.0
Solyc03g061560.3 Solanum lycopersicum HOM05D001560 ORTHO05D004675 1.3e-40 170.2 101 82.2
TPR.G40193 Trifolium pratense HOM05D001560 ORTHO05D004675 2.3e-40 169.5 79 97.5
BraSC48t46227Z Brassica rapa HOM05D001560 ORTHO05D004675 3.9e-40 168.7 111 79.3
Nitab4.5_0001152g0360 Nicotiana tabacum HOM05D001560 ORTHO05D004675 2.5e-39 166.0 127 68.5
Sc13g0007750 Simmondsia chinensis HOM05D001560 ORTHO05D004675 3.3e-39 165.6 164 57.3
SHI36139 Sapria himalayana HOM05D001560 ORTHO05D004675 3.6e-38 162.2 132 64.4
SHI36775 Sapria himalayana HOM05D001560 ORTHO05D004675 8.1e-38 161.0 87 86.2
SHI36786 Sapria himalayana HOM05D001560 ORTHO05D004675 8.1e-38 161.0 87 86.2
SHI35482 Sapria himalayana HOM05D001560 ORTHO05D003613 1.8e-37 159.8 125 68.0
CAN.G134.23 Capsicum annuum HOM05D001560 ORTHO05D004675 4.9e-35 151.8 74 95.9
Gohir.A03G134200 Gossypium hirsutum HOM05D001560 ORTHO05D004675 4.9e-35 151.8 74 95.9
Manes.01G049495 Manihot esculenta HOM05D001560 ORTHO05D004675 1.4e-34 150.2 72 94.4
SHI37068 Sapria himalayana HOM05D001560 ORTHO05D004675 1.9e-34 149.8 170 50.6
SHI39097 Sapria himalayana HOM05D001560 ORTHO05D004675 1.9e-34 149.8 81 86.4
Zm00001eb436070 Zea mays HOM05D001560 ORTHO05D004675 3.2e-34 149.1 74 94.6
Zm00001eb440310 Zea mays HOM05D001560 ORTHO05D004675 3.2e-34 149.1 74 94.6
Zm00001eb440380 Zea mays HOM05D001560 ORTHO05D004675 3.2e-34 149.1 74 94.6
Zm00001eb442180 Zea mays HOM05D001560 ORTHO05D004675 3.2e-34 149.1 74 94.6
Nitab4.5_0001152g0390 Nicotiana tabacum HOM05D001560 ORTHO05D004675 1.6e-33 146.7 91 79.1
SHI36081 Sapria himalayana HOM05D001560 ORTHO05D004675 1.0e-32 144.1 74 90.5
AUR62042344 Chenopodium quinoa HOM05D001560 ORTHO05D004675 1.3e-32 143.7 71 93.0
SMO053G0006 Selaginella moellendorffii HOM05D001560 ORTHO05D004675 1.7e-32 143.3 153 49.0
SHI36375 Sapria himalayana HOM05D001560 ORTHO05D004675 2.3e-32 142.9 74 90.5
SHI38033 Sapria himalayana HOM05D001560 ORTHO05D004675 5.1e-32 141.7 74 90.5
SHI40902 Sapria himalayana HOM05D001560 ORTHO05D004675 6.6e-32 141.4 74 89.2
SHI39123 Sapria himalayana HOM05D001560 ORTHO05D004675 8.6e-32 141.0 74 89.2
Nitab4.5_0013170g0020 Nicotiana tabacum HOM05D001560 ORTHO05D004675 3.3e-31 139.0 72 90.3
SHI36939 Sapria himalayana HOM05D001560 ORTHO05D004675 5.6e-31 138.3 72 90.3
SHI49835 Sapria himalayana HOM05D001560 ORTHO05D004675 9.5e-31 137.5 135 59.3
SHI50380 Sapria himalayana HOM05D001560 ORTHO05D004675 9.5e-31 137.5 135 59.3
SHI36627 Sapria himalayana HOM05D001560 ORTHO05D004675 1.2e-30 137.1 70 91.4
SHI43451 Sapria himalayana HOM05D001560 ORTHO05D004675 1.2e-30 137.1 74 87.8
SHI54988 Sapria himalayana HOM05D001560 ORTHO05D004675 2.1e-30 136.3 75 88.0
SHI34635 Sapria himalayana HOM05D001560 ORTHO05D004675 4.7e-30 135.2 72 87.5
Nitab4.5_0001127g0220 Nicotiana tabacum HOM05D001560 ORTHO05D004675 8.1e-30 134.4 74 85.1
SHI38213 Sapria himalayana HOM05D001560 ORTHO05D004675 2.3e-29 132.9 74 86.5
SHI34631 Sapria himalayana HOM05D001560 ORTHO05D004675 5.2e-29 131.7 74 86.5
Solyc08g029250.1 Solanum lycopersicum HOM05D001560 ORTHO05D004675 8.9e-29 131.0 144 53.5
SHI27346 Sapria himalayana HOM05D001560 ORTHO05D004675 1.2e-28 130.6 71 87.3
SHI38099 Sapria himalayana HOM05D001560 ORTHO05D004675 9.9e-28 127.5 74 83.8
TPR.G15690 Trifolium pratense HOM05D001560 ORTHO05D004675 1.7e-27 126.7 91 70.3
Solyc01g020470.3 Solanum lycopersicum HOM05D001560 ORTHO05D004675 6.4e-27 124.8 122 57.4
TPR.G20383 Trifolium pratense HOM05D001560 ORTHO05D004675 1.7e-24 116.7 64 87.5
PGSC0003DMG400020882 Solanum tuberosum HOM05D001560 ORTHO05D004675 5.6e-23 111.7 69 79.7
Nitab4.5_0000661g0100 Nicotiana tabacum HOM05D001560 ORTHO05D004675 7.3e-23 111.3 64 82.8
SHI33106 Sapria himalayana HOM05D000743 ORTHO05D000580 6.2e-22 108.2 59 91.5
Prupe.2G039100 Prunus persica HOM05D001560 ORTHO05D004675 2.4e-21 106.3 61 88.5
SHI44216 Sapria himalayana HOM05D001560 ORTHO05D004675 4.2e-18 95.5 69 69.6
CsaV3_5G015880 Cucumis sativus L. HOM05D001560 ORTHO05D004675 2.1e-17 93.2 49 87.8
Manes.01G049510 Manihot esculenta HOM05D001560 ORTHO05D004675 2.7e-17 92.8 47 89.4
SHI36269 Sapria himalayana HOM05D001560 ORTHO05D004675 7.8e-17 91.3 111 49.5
SHI35323 Sapria himalayana HOM05D001560 ORTHO05D004675 1.3e-16 90.5 58 77.6
Nitab4.5_0019346g0010 Nicotiana tabacum HOM05D001560 ORTHO05D004675 9.6e-15 84.3 44 90.9
Nitab4.5_0001152g0580 Nicotiana tabacum HOM05D001560 ORTHO05D004675 1.5e-12 77.0 45 77.8
SHI33107 Sapria himalayana HOM05D001560 ORTHO05D004675 2.0e-12 76.6 50 74.0
C01p34850 Brassica napus HOM05D001560 ORTHO05D004675 1.4e-10 70.5 36 91.7
SHI38481 Sapria himalayana HOM05D001560 ORTHO05D004675 1.9e-10 70.1 100 47.0
EL10Ac7g17432 Beta vulgaris HOM05D001560 ORTHO05D004675 1.8e-08 63.5 35 82.9
DCAR_022732 Daucus carota HOM05D001560 ORTHO05D004675 1.8e-08 63.5 34 82.4
SHI35288 Sapria himalayana HOM05D001560 ORTHO05D004675 3.9e-08 62.4 69 49.3
SHI36570 Sapria himalayana HOM05D001560 ORTHO05D004675 6.7e-08 61.6 60 58.3
Nitab4.5_0003709g0080 Nicotiana tabacum HOM05D012582 ORTHO05D011721 1.9e-07 60.1 30 90.0
BraSC48t46315Z Brassica rapa HOM05D001560 ORTHO05D004675 7.4e-07 58.2 29 89.7
SHI42054 Sapria himalayana HOM05D001560 ORTHO05D004675 2.8e-06 56.2 27 92.6


User provided reference genes

Program Settings