Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib268G1736 Durio zibethinus HOM05D004124 ORTHO05D004779 1.8e-112 409.5 232 100.0
Gohir.D04G183300 Gossypium hirsutum HOM05D004124 ORTHO05D004779 4.4e-103 378.3 231 91.3
Duzib251G0523 Durio zibethinus HOM05D004124 ORTHO05D004779 5.4e-101 371.3 231 91.8
Gohir.A04G140100 Gossypium hirsutum HOM05D004124 ORTHO05D004779 3.5e-100 368.6 231 90.5
Gorai.012G176300 Gossypium raimondii HOM05D004124 ORTHO05D004779 1.0e-99 367.1 230 90.4
COL.COLO4_20412 Corchorus olitorius HOM05D004124 ORTHO05D004779 1.4e-96 356.7 230 88.3
Ciclev10033913m.g Citrus clementina HOM05D004124 ORTHO05D004779 6.8e-96 354.4 231 89.6
Gohir.D02G148500 Gossypium hirsutum HOM05D004124 ORTHO05D004779 6.8e-96 354.4 232 88.8
CANSAT01G0376 Cannabis sativa HOM05D004124 ORTHO05D004779 1.7e-94 349.7 231 87.0
Gohir.A03G125700 Gossypium hirsutum HOM05D004124 ORTHO05D004779 1.7e-94 349.7 232 89.2
Gorai.005G166600 Gossypium raimondii HOM05D004124 ORTHO05D004779 2.2e-94 349.4 231 88.7
Potri.001G056000 Populus trichocarpa HOM05D004124 ORTHO05D004779 2.8e-94 349.0 230 87.8
Manes.12G010400 Manihot esculenta HOM05D004124 ORTHO05D004779 1.1e-93 347.1 231 87.4
GSVIVG01010495001 Vitis vinifera HOM05D004124 ORTHO05D004779 6.6e-91 337.8 230 87.8
RcHm_v2.0_Chr4g0430131 Rosa chinensis HOM05D004124 ORTHO05D004779 1.9e-90 336.3 231 84.8
Haze_12426 Corylus avellana HOM05D004124 ORTHO05D004779 7.3e-90 334.3 230 86.1
arahy.Tifrunner.gnm1.ann1.JS6392 Arachis hypogaea HOM05D004124 ORTHO05D004779 9.5e-90 334.0 230 83.5
TWI18G0339 Tripterygium wilfordii HOM05D004124 ORTHO05D004779 1.6e-89 333.2 231 85.3
Dinv10949 Davidia involucrata HOM05D004124 ORTHO05D004779 2.8e-89 332.4 230 84.8
Sabra01G0040400 Salix brachista HOM05D004124 ORTHO05D004779 2.3e-88 329.3 230 83.9
FvH4_4g23660 Fragaria vesca HOM05D004124 ORTHO05D004779 3.0e-88 328.9 231 83.1
FAN12G0357 Fragaria x ananassa HOM05D004124 ORTHO05D004779 4.0e-88 328.6 230 83.0
Glyma.18G005700 Glycine max HOM05D004124 ORTHO05D004779 6.8e-88 327.8 231 82.7
CiPaw.06G103200 Carya illinoinensis HOM05D004124 ORTHO05D004779 8.9e-88 327.4 231 85.3
Atru.chr11.2334 Acer truncatum HOM05D004124 ORTHO05D004779 1.2e-87 327.0 231 87.0
arahy.Tifrunner.gnm1.ann1.B7Q2TL Arachis hypogaea HOM05D004124 ORTHO05D004779 1.2e-87 327.0 241 79.7
Cc11_g16980 Coffea canephora HOM05D004124 ORTHO05D004779 1.2e-87 327.0 230 82.2
Potri.003G172500 Populus trichocarpa HOM05D004124 ORTHO05D004779 1.5e-87 326.6 231 84.4
FAN17G0270 Fragaria x ananassa HOM05D004124 ORTHO05D004779 2.0e-87 326.2 230 81.3
MELO3C011859.2 Cucumis melo HOM05D004124 ORTHO05D004779 2.6e-87 325.9 231 82.7
CsaV3_5G030210 Cucumis sativus L. HOM05D004124 ORTHO05D004779 2.6e-87 325.9 231 82.7
FAN07G1336 Fragaria x ananassa HOM05D004124 ORTHO05D004779 3.4e-87 325.5 230 81.3
FAN22G1987 Fragaria x ananassa HOM05D004124 ORTHO05D004779 3.4e-87 325.5 230 82.6
Glyma.11G251300 Glycine max HOM05D004124 ORTHO05D004779 4.4e-87 325.1 231 82.7
Phvul.001G262500 Phaseolus vulgaris HOM05D004124 ORTHO05D004779 4.4e-87 325.1 231 82.7
Lj6g0002227 Lotus japonicus HOM05D004124 ORTHO05D004779 5.7e-87 324.7 230 83.5
VMungo1383G0738 Vigna mungo HOM05D004124 ORTHO05D004779 9.8e-87 323.9 230 82.2
Eucgr.H04636 Eucalyptus grandis HOM05D004124 ORTHO05D004779 1.3e-86 323.6 231 81.0
QL03p052498 Quercus lobata HOM05D004124 ORTHO05D004779 1.3e-86 323.6 230 82.6
CSS0020706 Camellia sinensis var. sinensis HOM05D004124 ORTHO05D004779 1.7e-86 323.2 230 82.2
PGR102G1761 Punica granatum HOM05D004124 ORTHO05D004779 2.2e-86 322.8 231 82.7
MD16G1120200 Malus domestica HOM05D004124 ORTHO05D004779 8.3e-86 320.9 233 82.4
Sabra03G0126200 Salix brachista HOM05D004124 ORTHO05D004779 1.1e-85 320.5 230 82.2
Duzib248G0967 Durio zibethinus HOM05D004124 ORTHO05D004779 3.2e-85 318.9 230 84.8
Ca_16453_v3 Cicer arietinum L. HOM05D004124 ORTHO05D004779 5.4e-85 318.2 231 80.5
CiPaw.05G108900 Carya illinoinensis HOM05D004124 ORTHO05D004779 1.2e-84 317.0 231 82.7
Prupe.1G225000 Prunus persica HOM05D004124 ORTHO05D004779 5.9e-84 314.7 232 82.8
Psat5g096680 Pisum sativum HOM05D004124 ORTHO05D004779 6.6e-83 311.2 231 79.7
Nn8g41237 Nelumbo nucifera HOM05D004124 ORTHO05D004779 1.1e-82 310.5 231 77.9
Rhsim12G0025300 Rhododendron simsii HOM05D004124 ORTHO05D004779 3.3e-82 308.9 230 80.4
AUR62005628 Chenopodium quinoa HOM05D004124 ORTHO05D004779 6.2e-81 304.7 234 78.6
TAR383G0859 Trochodendron aralioides HOM05D004124 ORTHO05D004779 8.0e-81 304.3 230 78.3
Thecc.02G206600 Theobroma cacao HOM05D004124 ORTHO05D004779 1.4e-80 303.5 153 92.8
Nn5g26967 Nelumbo nucifera HOM05D004124 ORTHO05D004779 3.1e-80 302.4 230 79.1
TAR626G1310 Trochodendron aralioides HOM05D004124 ORTHO05D004779 4.0e-80 302.0 231 77.9
AUR62028920 Chenopodium quinoa HOM05D004124 ORTHO05D004779 8.9e-80 300.8 234 78.2
Lalb_Chr11g0075781 Lupinus albus HOM05D004124 ORTHO05D004779 5.8e-79 298.1 231 76.2
Medtr3g085190 Medicago truncatula HOM05D004124 ORTHO05D004779 7.5e-79 297.7 230 76.1
Nitab4.5_0003900g0010 Nicotiana tabacum HOM05D004124 ORTHO05D004779 1.3e-78 297.0 230 77.4
CSS0002767 Camellia sinensis var. sinensis HOM05D004124 ORTHO05D004779 3.7e-78 295.4 186 80.1
Nitab4.5_0000861g0060 Nicotiana tabacum HOM05D004124 ORTHO05D004779 1.9e-77 293.1 230 77.0
PGSC0003DMG400034304 Solanum tuberosum HOM05D004124 ORTHO05D004779 3.2e-77 292.4 231 76.6
Manes.13G011200 Manihot esculenta HOM05D004124 ORTHO05D004779 4.1e-77 292.0 230 76.5
EL10Ac6g13513 Beta vulgaris HOM05D004124 ORTHO05D004779 5.4e-77 291.6 234 76.1
Sopen05g010890 Solanum pennellii HOM05D004124 ORTHO05D004779 9.2e-77 290.8 231 75.8
MSTRG.8009 Avicennia marina HOM05D004124 ORTHO05D004779 1.6e-76 290.0 231 76.6
Actinidia09646 Actinidia chinensis HOM05D004124 ORTHO05D004779 2.7e-76 289.3 176 77.8
Solyc05g015500.4 Solanum lycopersicum HOM05D004124 ORTHO05D004779 3.5e-76 288.9 231 75.3
MSTRG.500 Avicennia marina HOM05D004124 ORTHO05D004779 4.6e-76 288.5 230 75.2
Sed0002251 Sechium edule HOM05D004124 ORTHO05D004779 6.0e-76 288.1 231 76.6
CAN.G163.7 Capsicum annuum HOM05D004124 ORTHO05D004779 1.3e-75 287.0 232 76.7
MBI13_g33572_MAGBIO Magnolia biondii HOM05D004124 ORTHO05D004779 2.3e-75 286.2 186 74.7
Actinidia08066 Actinidia chinensis HOM05D004124 ORTHO05D004779 3.0e-75 285.8 184 74.5
PSO063G2768 Papaver somniferum HOM05D004124 ORTHO05D004779 3.9e-75 285.4 232 75.0
PSO170G5699 Papaver somniferum HOM05D004124 ORTHO05D004779 3.9e-75 285.4 232 75.0
Peaxi162Scf00128g01335 Petunia axillaris HOM05D004124 ORTHO05D004779 3.9e-75 285.4 231 74.9
Lj6A827G48 Lonicera japonica HOM05D004124 ORTHO05D004779 2.5e-74 282.7 173 78.0
Lalb_Chr08g0230601 Lupinus albus HOM05D004124 ORTHO05D004779 4.3e-74 282.0 231 74.9
Lalb_Chr13g0294351 Lupinus albus HOM05D004124 ORTHO05D004779 4.3e-74 282.0 231 73.6
vmacro01057 Vaccinium macrocarpon HOM05D004124 ORTHO05D004779 5.6e-74 281.6 285 64.6
Hund06093 Selenicereus undatus HOM05D004124 ORTHO05D004779 2.1e-73 279.6 187 73.8
TPR.G17791 Trifolium pratense HOM05D004124 ORTHO05D004779 4.7e-73 278.5 232 73.7
THA.LOC104807133 Tarenaya hassleriana HOM05D004124 ORTHO05D004779 8.1e-73 277.7 234 72.6
Hund25468 Selenicereus undatus HOM05D004124 ORTHO05D004779 8.9e-72 274.2 260 70.0
Lalb_Chr07g0187111 Lupinus albus HOM05D004124 ORTHO05D004779 1.2e-71 273.9 233 73.4
Migut.K00950 Erythranthe guttata HOM05D004124 ORTHO05D004779 2.0e-71 273.1 231 72.7
THA.LOC104825500 Tarenaya hassleriana HOM05D004124 ORTHO05D004779 3.4e-71 272.3 232 72.8
Actinidia30642 Actinidia chinensis HOM05D004124 ORTHO05D004779 7.5e-71 271.2 231 72.7
Aa31sc584G20 Aethionema arabicum HOM05D004124 ORTHO05D004779 1.3e-70 270.4 233 72.5
Lj3A1069T45 Lonicera japonica HOM05D004124 ORTHO05D004779 6.4e-70 268.1 231 73.6
DCAR_024098 Daucus carota HOM05D004124 ORTHO05D004779 8.3e-70 267.7 231 69.3
Thhalv10018870m.g Eutrema salsugineum HOM05D004124 ORTHO05D004779 2.4e-69 266.2 189 69.3
Carub.0002s1361 Capsella rubella HOM05D004124 ORTHO05D004779 3.2e-69 265.8 187 69.0
DCAR_026459 Daucus carota HOM05D004124 ORTHO05D004779 4.1e-69 265.4 184 68.5
THA.LOC104807526 Tarenaya hassleriana HOM05D004124 ORTHO05D004779 2.7e-68 262.7 233 68.2
Oeu006524.1 Olea europaea HOM05D004124 ORTHO05D004779 3.5e-68 262.3 184 70.7
ECA233G0726 Erigeron canadensis HOM05D004124 ORTHO05D004779 7.8e-68 261.2 231 71.0
SGA_v2.0_scaffold391G50628 Striga asiatica HOM05D004124 ORTHO05D004779 5.1e-67 258.5 185 68.1
ATR0626G238 Amborella trichopoda HOM05D004124 ORTHO05D004779 8.6e-67 257.7 232 67.7
Sp5g22270 Schrenkiella parvula HOM05D004124 ORTHO05D004779 1.5e-66 256.9 236 71.2
AL2G25860 Arabidopsis lyrata HOM05D004124 ORTHO05D004779 2.5e-66 256.1 188 67.6
AT1G67325 Arabidopsis thaliana HOM05D004124 ORTHO05D004779 2.1e-65 253.1 188 67.0
CARHR059820 Cardamine hirsuta HOM05D004124 ORTHO05D004779 3.6e-65 252.3 185 67.6
ECA234G0541 Erigeron canadensis HOM05D004124 ORTHO05D004779 1.7e-62 243.4 179 65.9
Aqoxy7G02609 Aquilegia oxysepala HOM05D004124 ORTHO05D004779 7.1e-61 238.0 187 65.2
HanXRQChr12g0372641 Helianthus annuus HOM05D004124 ORTHO05D004779 2.1e-60 236.5 229 65.9
HPP92_015269 Vanilla planifolia HOM05D004124 ORTHO05D004779 3.5e-60 235.7 187 65.8
Eucgr.B03499 Eucalyptus grandis HOM05D004124 ORTHO05D004779 6.0e-60 235.0 230 67.4
Sed0008103 Sechium edule HOM05D004124 ORTHO05D004779 7.8e-60 234.6 231 67.5
BcaB03g15346 Brassica carinata HOM05D004124 ORTHO05D004779 3.0e-59 232.6 190 64.2
HanXRQChr17g0569011 Helianthus annuus HOM05D004124 ORTHO05D004779 1.1e-58 230.7 184 62.0
C06p38790 Brassica napus HOM05D004124 ORTHO05D004779 4.0e-56 222.2 191 61.8
Sc04g0010190 Simmondsia chinensis HOM05D004124 ORTHO05D004779 1.5e-55 220.3 192 76.0
BolC6t38971H Brassica oleracea HOM05D004124 ORTHO05D004779 2.6e-55 219.5 191 61.3
A07p32620 Brassica napus HOM05D004124 ORTHO05D004779 4.4e-55 218.8 192 60.9
BraA07t30886Z Brassica rapa HOM05D004124 ORTHO05D004779 4.4e-55 218.8 192 60.9
HanXRQChr12g0361221 Helianthus annuus HOM05D004124 ORTHO05D004779 1.7e-54 216.9 184 62.0
Lsat_1_v5_gn_4_400 Lactuca sativa HOM05D004124 ORTHO05D004779 2.2e-54 216.5 167 68.9
C06p42940 Brassica napus HOM05D004124 ORTHO05D004779 7.1e-53 211.5 192 59.4
A07p33920 Brassica napus HOM05D000660 ORTHO05D000766 2.1e-52 209.9 193 59.1
BolC6t39143H Brassica oleracea HOM05D004124 ORTHO05D004779 6.0e-52 208.4 194 58.8
BraA07t31018Z Brassica rapa HOM05D000660 ORTHO05D000766 1.0e-51 207.6 193 58.5
ClCG11G013590 Citrullus lanatus HOM05D004124 ORTHO05D004779 2.5e-50 203.0 230 61.7
Ah.03g136110 Amaranthus hybridus HOM05D004124 ORTHO05D004779 7.3e-50 201.4 177 61.0
Oeu049141.1 Olea europaea HOM05D004124 ORTHO05D004779 8.1e-49 198.0 175 60.0
Cpa.g.sc43.62 Carica papaya HOM05D004124 ORTHO05D004779 1.4e-48 197.2 203 53.2
unitig_749.g13306 Utricularia gibba HOM05D004124 ORTHO05D004779 1.4e-48 197.2 184 57.6
Zm00001eb174550 Zea mays HOM05D004124 ORTHO05D004779 1.8e-48 196.8 183 58.5
Zm00001eb035500 Zea mays HOM05D004124 ORTHO05D004779 3.3e-42 176.0 183 54.1
CDE04G3109 Ceratophyllum demersum HOM05D004124 ORTHO05D004779 3.7e-41 172.6 187 54.0
Lsat_1_v5_gn_5_94821 Lactuca sativa HOM05D004124 ORTHO05D004779 3.7e-41 172.6 233 59.2
Os08g0521400 Oryza sativa ssp. japonica HOM05D004124 ORTHO05D004779 2.7e-36 156.4 191 48.7
Lsat_1_v5_gn_8_147801 Lactuca sativa HOM05D004124 ORTHO05D004779 1.1e-34 151.0 183 49.7
HanXRQChr08g0221261 Helianthus annuus HOM05D004124 ORTHO05D004779 1.0e-19 101.3 88 58.0
AagrBONN_evm.TU.Sc2ySwM_340.309 Anthoceros agrestis HOM05D004124 ORTHO05D004779 5.1e-19 99.0 176 36.9
AagrBONN_evm.TU.Sc2ySwM_368.334 Anthoceros agrestis HOM05D004124 ORTHO05D004779 8.8e-19 98.2 163 38.7
SMO200G0023 Selaginella moellendorffii HOM05D004124 ORTHO05D004779 3.7e-17 92.8 182 34.1
Mapoly0005s0267 Marchantia polymorpha HOM05D004124 ORTHO05D004779 4.8e-17 92.4 133 41.4
CiPaw.14G021000 Carya illinoinensis HOM05D004124 ORTHO05D004779 1.8e-16 90.5 171 36.8
Eucgr.L03169 Eucalyptus grandis HOM05D004124 ORTHO05D004779 2.6e-15 86.7 105 48.6
HanXRQChr12g0379451 Helianthus annuus HOM05D004124 ORTHO05D004779 1.0e-14 84.7 53 69.8
CiPaw.13G027200 Carya illinoinensis HOM05D002637 ORTHO05D008095 2.9e-14 83.2 166 38.0
QL04p030567 Quercus lobata HOM05D004124 ORTHO05D004779 3.8e-14 82.8 167 35.3
GSVIVG01018266001 Vitis vinifera HOM05D004124 ORTHO05D004779 5.5e-13 79.0 176 35.8
arahy.Tifrunner.gnm1.ann1.FNBZ5S Arachis hypogaea HOM05D004124 ORTHO05D004779 6.1e-12 75.5 171 36.3
PSO782G3756 Papaver somniferum HOM05D004124 ORTHO05D004779 7.9e-12 75.1 170 34.7
arahy.Tifrunner.gnm1.ann1.4H3LGZ Arachis hypogaea HOM05D004124 ORTHO05D004779 1.0e-11 74.7 170 35.9
Cfa011079 Carpinus fangiana HOM05D002637 ORTHO05D008095 1.4e-11 74.3 101 40.6
CANSAT21G0875 Cannabis sativa HOM05D004124 ORTHO05D004779 3.9e-11 72.8 174 33.3
CDE06G1866 Ceratophyllum demersum HOM05D004124 ORTHO05D004779 5.1e-11 72.4 179 31.8
CDE06G1514 Ceratophyllum demersum HOM05D004124 ORTHO05D004779 1.5e-10 70.9 163 35.6
Nn1g00866 Nelumbo nucifera HOM05D004124 ORTHO05D004779 4.4e-10 69.3 181 34.8
TAR375G0412 Trochodendron aralioides HOM05D004124 ORTHO05D004779 7.4e-10 68.6 177 34.5
Ca_14066_v3 Cicer arietinum L. HOM05D004124 ORTHO05D004779 3.7e-09 66.2 176 36.9
ATR0057G076 Amborella trichopoda HOM05D004124 ORTHO05D004779 4.8e-09 65.9 51 52.9
Lj3g0004507 Lotus japonicus HOM05D004124 ORTHO05D004779 6.3e-09 65.5 178 34.8
Zm00001eb105300 Zea mays HOM05D004124 ORTHO05D004779 8.2e-09 65.1 56 48.2
Pp3c4_8110 Physcomitrium patens HOM05D004124 ORTHO05D004779 1.8e-08 63.9 33 72.7
Aqoxy3G02746 Aquilegia oxysepala HOM05D004124 ORTHO05D004779 3.1e-08 63.2 164 31.1
VMungo1383G0643 Vigna mungo HOM05D004124 ORTHO05D004779 4.1e-08 62.8 164 29.9
Os07g0490600 Oryza sativa ssp. japonica HOM05D004124 ORTHO05D004779 1.2e-07 61.2 58 46.6
QL04p030562 Quercus lobata HOM05D004124 ORTHO05D000004 1.2e-07 61.2 41 61.0
SMO181G0003 Selaginella moellendorffii HOM05D004124 ORTHO05D004779 1.2e-07 61.2 30 76.7
Glyma.18G252600 Glycine max HOM05D004124 ORTHO05D004779 1.5e-07 60.8 40 62.5
Phvul.008G046200 Phaseolus vulgaris HOM05D004124 ORTHO05D004779 1.5e-07 60.8 40 62.5
Actinidia20714 Actinidia chinensis HOM05D004124 ORTHO05D004779 2.0e-07 60.5 46 50.0
Haze_02835 Corylus avellana HOM05D004124 ORTHO05D004779 2.6e-07 60.1 47 53.2
TAR374G0532 Trochodendron aralioides HOM05D004124 ORTHO05D004779 2.6e-07 60.1 41 58.5
Glyma.09G242400 Glycine max HOM05D004124 ORTHO05D004779 4.5e-07 59.3 35 68.6
BcaNung07398 Brassica carinata HOM05D004124 ORTHO05D004779 5.9e-07 58.9 31 67.7
CBR_g53713 Chara braunii HOM05D004124 ORTHO05D004779 2.2e-06 57.0 28 75.0
Zm00001eb321720 Zea mays HOM05D004124 ORTHO05D004779 2.2e-06 57.0 175 30.3
PSO063G6881 Papaver somniferum HOM05D004124 ORTHO05D004779 6.5e-06 55.5 55 43.6
Psat7g021520 Pisum sativum HOM05D004124 ORTHO05D004779 6.5e-06 55.5 48 45.8


User provided reference genes

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