Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib268G1486 Durio zibethinus HOM05D004538 ORTHO05D006068 1.3e-252 875.9 451 100.0
Gorai.013G149100 Gossypium raimondii HOM05D004538 ORTHO05D006068 1.9e-235 818.9 450 92.4
Gohir.D13G132900 Gossypium hirsutum HOM05D004538 ORTHO05D006068 2.5e-235 818.5 450 92.4
Gohir.A13G129700 Gossypium hirsutum HOM05D004538 ORTHO05D006068 7.9e-234 813.5 450 91.8
Thecc.07G004000 Theobroma cacao HOM05D004538 ORTHO05D006068 3.9e-233 811.2 456 91.7
Ciclev10008262m.g Citrus clementina HOM05D004538 ORTHO05D006068 1.0e-212 743.4 451 84.3
TWI39G0910 Tripterygium wilfordii HOM05D004538 ORTHO05D006068 4.8e-207 724.5 457 81.2
THA.LOC104811692 Tarenaya hassleriana HOM05D004538 ORTHO05D006068 1.7e-204 716.1 451 81.6
COL.COLO4_07768 Corchorus olitorius HOM05D004538 ORTHO05D006068 5.0e-204 714.5 383 93.7
CsaV3_4G008160 Cucumis sativus L. HOM05D004538 ORTHO05D006068 6.5e-204 714.1 452 81.2
Sed0002758 Sechium edule HOM05D004538 ORTHO05D006068 3.3e-203 711.8 459 79.5
AT5G56090 Arabidopsis thaliana HOM05D004538 ORTHO05D006068 2.1e-202 709.1 453 79.9
ClCG07G010160 Citrullus lanatus HOM05D004538 ORTHO05D006068 3.6e-202 708.4 460 79.6
Prupe.8G086500 Prunus persica HOM05D004538 ORTHO05D006068 3.6e-202 708.4 452 80.3
Sp6g17940 Schrenkiella parvula HOM05D004538 ORTHO05D006068 6.8e-201 704.1 453 78.6
Carub.0008s1641 Capsella rubella HOM05D004538 ORTHO05D006068 2.0e-200 702.6 453 78.6
Prupe.4G230100 Prunus persica HOM05D004538 ORTHO05D006068 2.6e-200 702.2 452 79.9
Haze_03267 Corylus avellana HOM05D004538 ORTHO05D006068 9.8e-200 700.3 444 81.8
AL8G31670 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 1.3e-199 699.9 453 78.8
Hund25422 Selenicereus undatus HOM05D004538 ORTHO05D006068 1.3e-199 699.9 461 77.9
Sabra11G0139500 Salix brachista HOM05D004538 ORTHO05D006068 2.8e-199 698.7 460 79.1
MELO3C016120.2 Cucumis melo HOM05D004538 ORTHO05D006068 3.7e-199 698.4 463 78.8
AL2G22990 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 2.4e-198 695.7 453 78.6
BraA10t43427Z Brassica rapa HOM05D004538 ORTHO05D006068 2.4e-198 695.7 450 78.7
CARHR269470 Cardamine hirsuta HOM05D004538 ORTHO05D006068 3.1e-198 695.3 451 77.8
Potri.011G166800 Populus trichocarpa HOM05D004538 ORTHO05D006068 5.4e-198 694.5 460 78.9
GSVIVG01014777001 Vitis vinifera HOM05D004538 ORTHO05D006068 5.4e-198 694.5 449 79.7
CiPaw.15G107100 Carya illinoinensis HOM05D004538 ORTHO05D006068 7.0e-198 694.1 401 86.0
AUR62001067 Chenopodium quinoa HOM05D004538 ORTHO05D006068 2.7e-197 692.2 463 76.5
BcaB08g35975 Brassica carinata HOM05D004538 ORTHO05D006068 3.5e-197 691.8 453 77.7
A10p13290 Brassica napus HOM05D002718 ORTHO05D003269 3.5e-197 691.8 450 78.2
AL2G24490 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 4.5e-197 691.4 453 78.1
TAR626G1654 Trochodendron aralioides HOM05D004538 ORTHO05D006068 4.5e-197 691.4 457 78.3
PGR083G1782 Punica granatum HOM05D004538 ORTHO05D006068 5.9e-197 691.0 450 78.2
Eucgr.F02006 Eucalyptus grandis HOM05D004538 ORTHO05D006068 7.8e-197 690.6 458 78.4
Ah.12g065010 Amaranthus hybridus HOM05D004538 ORTHO05D006068 1.7e-196 689.5 463 76.2
CSS0012792 Camellia sinensis var. sinensis HOM05D004538 ORTHO05D006068 2.3e-196 689.1 475 76.2
BolC9t57574H Brassica oleracea HOM05D004538 ORTHO05D006068 1.1e-195 686.8 454 77.3
BcaC04g20158 Brassica carinata HOM05D004538 ORTHO05D006068 1.5e-195 686.4 454 77.3
Hma1.2p1_0321F.1_g124200 Hydrangea macrophylla HOM05D004538 ORTHO05D006068 4.3e-195 684.9 464 78.0
Thhalv10013497m.g Eutrema salsugineum HOM05D004538 ORTHO05D006068 5.6e-195 684.5 453 77.0
Sc07g0002240 Simmondsia chinensis HOM05D004538 ORTHO05D006068 1.2e-194 683.3 450 77.3
Lalb_Chr04g0247681 Lupinus albus HOM05D004538 ORTHO05D006068 1.6e-194 682.9 456 77.0
QL09p046970 Quercus lobata HOM05D004538 ORTHO05D006068 2.8e-194 682.2 457 78.1
RcHm_v2.0_Chr5g0075121 Rosa chinensis HOM05D004538 ORTHO05D006068 2.8e-194 682.2 451 77.8
Aa31LG3G12000 Aethionema arabicum HOM05D004538 ORTHO05D006068 3.6e-194 681.8 456 77.0
RcHm_v2.0_Chr6g0267391 Rosa chinensis HOM05D004538 ORTHO05D006068 1.4e-193 679.9 451 76.9
EL10Ac2g02751 Beta vulgaris HOM05D004538 ORTHO05D006068 1.8e-193 679.5 458 74.0
C09p47190 Brassica napus HOM05D002718 ORTHO05D003269 6.8e-193 677.6 446 77.6
Actinidia00835 Actinidia chinensis HOM05D004538 ORTHO05D006068 8.9e-193 677.2 474 75.3
Cc02_g29800 Coffea canephora HOM05D004538 ORTHO05D006068 1.2e-192 676.8 475 74.9
Cc02_g09720 Coffea canephora HOM05D004538 ORTHO05D006068 2.0e-192 676.0 477 74.8
Nitab4.5_0005622g0040 Nicotiana tabacum HOM05D004538 ORTHO05D006068 2.6e-192 675.6 474 74.7
Peaxi162Scf00173g00324 Petunia axillaris HOM05D004538 ORTHO05D006068 3.4e-192 675.2 467 76.2
Lj8A182T63 Lonicera japonica HOM05D004538 ORTHO05D006068 9.8e-192 673.7 397 84.6
Lj5g0024294 Lotus japonicus HOM05D004538 ORTHO05D006068 9.8e-192 673.7 457 77.2
Nn1g08442 Nelumbo nucifera HOM05D004538 ORTHO05D006068 9.8e-192 673.7 456 74.8
Hund19415 Selenicereus undatus HOM05D004538 ORTHO05D006068 2.2e-191 672.5 464 74.8
BcaC04g20151 Brassica carinata HOM05D004538 ORTHO05D006068 3.7e-191 671.8 454 76.2
VMungo0647G1241 Vigna mungo HOM05D004538 ORTHO05D006068 4.9e-191 671.4 461 75.1
FAN11G3993 Fragaria x ananassa HOM05D004538 ORTHO05D006068 6.4e-191 671.0 451 76.5
LjContig00081g0007081 Lotus japonicus HOM05D004538 ORTHO05D006068 8.3e-191 670.6 453 77.0
CANSAT11G1513 Cannabis sativa HOM05D004538 ORTHO05D006068 1.4e-190 669.8 452 75.7
FvH4_3g41910 Fragaria vesca HOM05D004538 ORTHO05D006068 1.8e-190 669.5 451 76.7
Sopen11g002920 Solanum pennellii HOM05D004538 ORTHO05D006068 1.8e-190 669.5 469 75.5
Cpa.g.sc97.88 Carica papaya HOM05D004538 ORTHO05D006068 2.4e-190 669.1 390 85.9
TPR.G1264 Trifolium pratense HOM05D004538 ORTHO05D006068 4.1e-190 668.3 456 75.7
FAN21G0976 Fragaria x ananassa HOM05D004538 ORTHO05D006068 5.4e-190 667.9 451 76.1
Phvul.008G282700 Phaseolus vulgaris HOM05D004538 ORTHO05D006068 1.2e-189 666.8 460 75.9
Glyma.14G010400 Glycine max HOM05D004538 ORTHO05D006068 1.6e-189 666.4 455 76.5
SGA_v2.0_scaffold62G21339 Striga asiatica HOM05D004538 ORTHO05D006068 1.6e-189 666.4 475 73.7
PSO675G3744 Papaver somniferum HOM05D004538 ORTHO05D006068 2.0e-189 666.0 464 73.9
Migut.F00884 Erythranthe guttata HOM05D004538 ORTHO05D006068 2.7e-189 665.6 435 78.9
Medtr5g096830 Medicago truncatula HOM05D004538 ORTHO05D006068 3.5e-189 665.2 459 74.9
Solyc11g007000.2 Solanum lycopersicum HOM05D004538 ORTHO05D006068 3.5e-189 665.2 474 74.1
CAN.G645.5 Capsicum annuum HOM05D004538 ORTHO05D006068 4.6e-189 664.8 393 84.5
Dinv31347 Davidia involucrata HOM05D004538 ORTHO05D006068 4.6e-189 664.8 391 84.4
HanXRQChr04g0114571 Helianthus annuus HOM05D004538 ORTHO05D006068 2.3e-188 662.5 458 74.5
PSO541G6331 Papaver somniferum HOM05D004538 ORTHO05D006068 2.3e-188 662.5 464 73.3
FAN25G0511 Fragaria x ananassa HOM05D004538 ORTHO05D006068 3.0e-188 662.1 452 75.4
Lj1C898T12 Lonicera japonica HOM05D004538 ORTHO05D006068 3.9e-188 661.8 385 85.7
Oeu036424.1 Olea europaea HOM05D004538 ORTHO05D006068 3.9e-188 661.8 390 84.4
Aqoxy7G01640 Aquilegia oxysepala HOM05D004538 ORTHO05D006068 8.6e-188 660.6 458 73.8
PGSC0003DMG400023975 Solanum tuberosum HOM05D004538 ORTHO05D006068 8.6e-188 660.6 474 74.3
unitig_899.g14715 Utricularia gibba HOM05D004538 ORTHO05D006068 1.9e-187 659.4 473 73.6
arahy.Tifrunner.gnm1.ann1.0Z7D2W Arachis hypogaea HOM05D004538 ORTHO05D006068 2.5e-187 659.1 410 80.5
Lsat_1_v5_gn_7_116401 Lactuca sativa HOM05D004538 ORTHO05D006068 3.3e-187 658.7 465 73.5
arahy.Tifrunner.gnm1.ann1.01YFCZ Arachis hypogaea HOM05D004538 ORTHO05D006068 4.3e-187 658.3 410 79.5
Glyma.02G303400 Glycine max HOM05D004538 ORTHO05D006068 4.3e-187 658.3 384 83.9
Psat2g005560 Pisum sativum HOM05D004538 ORTHO05D006068 7.3e-187 657.5 461 73.8
SalBow6G4226 Salvia bowleyana HOM05D004538 ORTHO05D006068 1.2e-186 656.8 405 81.5
Ca_06424_v3 Cicer arietinum L. HOM05D000527 ORTHO05D000559 2.8e-186 655.6 390 83.8
BcaC04g20148 Brassica carinata HOM05D004538 ORTHO05D006068 3.6e-186 655.2 382 84.8
C09p47240 Brassica napus HOM05D004538 ORTHO05D006068 6.2e-186 654.4 382 84.6
PSO063G5767 Papaver somniferum HOM05D004538 ORTHO05D006068 4.0e-185 651.7 464 73.1
DCAR_013768 Daucus carota HOM05D004538 ORTHO05D006068 5.2e-185 651.4 480 71.0
HanXRQChr11g0334561 Helianthus annuus HOM05D004538 ORTHO05D006068 4.4e-184 648.3 463 72.8
Medtr3g095790 Medicago truncatula HOM05D004538 ORTHO05D006068 2.9e-183 645.6 452 74.8
vmacro09607 Vaccinium macrocarpon HOM05D004538 ORTHO05D006068 8.3e-183 644.0 535 66.2
ECA236G0032 Erigeron canadensis HOM05D004538 ORTHO05D006068 3.2e-182 642.1 385 82.6
MBI14_g30901_MAGBIO Magnolia biondii HOM05D004538 ORTHO05D006068 2.7e-181 639.0 471 69.6
MD02G1271400 Malus domestica HOM05D004538 ORTHO05D006068 1.9e-179 632.9 404 79.5
ATR0751G112 Amborella trichopoda HOM05D004538 ORTHO05D006068 1.4e-174 616.7 416 74.5
AUR62032611 Chenopodium quinoa HOM05D004538 ORTHO05D006068 4.3e-171 605.1 464 70.3
HPP92_015457 Vanilla planifolia HOM05D004538 ORTHO05D006068 9.5e-171 604.0 452 67.9
Os08g0496000 Oryza sativa ssp. japonica HOM05D004538 ORTHO05D006068 2.4e-169 599.4 424 71.7
AUR62031724 Chenopodium quinoa HOM05D004538 ORTHO05D006068 1.1e-158 563.9 465 65.4
BolC9t57580H Brassica oleracea HOM05D004538 ORTHO05D006068 7.1e-158 561.2 454 67.4
Manes.01G005033 Manihot esculenta HOM05D004538 ORTHO05D006068 3.9e-156 555.4 452 66.4
CDE06G0653 Ceratophyllum demersum HOM05D004538 ORTHO05D006068 4.0e-153 545.4 357 72.8
Zm00001eb033900 Zea mays HOM05D004538 ORTHO05D006068 1.4e-150 537.0 412 65.3
Mapoly0020s0071 Marchantia polymorpha HOM05D004538 ORTHO05D006068 5.6e-147 525.0 373 70.2
Nitab4.5_0001437g0060 Nicotiana tabacum HOM05D004538 ORTHO05D006068 1.3e-146 523.9 376 72.6
Pp3c7_5710 Physcomitrium patens HOM05D004538 ORTHO05D006068 2.0e-144 516.5 370 69.7
Cc02_g29840 Coffea canephora HOM05D004538 ORTHO05D006068 1.3e-138 497.3 345 76.2
CDE02G3208 Ceratophyllum demersum HOM05D004538 ORTHO05D006068 1.2e-133 480.7 373 63.0
CBR_g24146 Chara braunii HOM05D004538 ORTHO05D006068 6.0e-133 478.4 375 62.9
SMO353G0004 Selaginella moellendorffii HOM05D004538 ORTHO05D006068 1.0e-132 477.6 373 65.4
AL8G31690 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 1.8e-132 476.9 275 85.5
AagrBONN_evm.TU.Sc2ySwM_368.2501 Anthoceros agrestis HOM05D004538 ORTHO05D006068 3.0e-132 476.1 416 58.9
Atru.chr2.2684 Acer truncatum HOM05D004538 ORTHO05D006068 1.0e-127 461.1 276 83.3
FvH4_2g10180 Fragaria vesca HOM05D004538 ORTHO05D006068 4.2e-126 455.7 315 74.3
Duzib213G1090 Durio zibethinus HOM05D004538 ORTHO05D006068 1.0e-124 451.1 317 77.9
CDE03G0061 Ceratophyllum demersum HOM05D004538 ORTHO05D006068 7.7e-120 434.9 289 71.6
SalBow6G3380 Salvia bowleyana HOM05D004538 ORTHO05D006068 6.5e-119 431.8 395 60.5
FAN24G0261 Fragaria x ananassa HOM05D004538 ORTHO05D006068 4.2e-118 429.1 365 63.0
Potri.001G469701 Populus trichocarpa HOM05D004538 ORTHO05D006068 1.3e-114 417.5 325 68.6
MD07G1040600 Malus domestica HOM05D004538 ORTHO05D006068 4.1e-113 412.5 331 69.5
Aa31LG3G11950 Aethionema arabicum HOM05D004538 ORTHO05D006068 7.2e-110 401.7 252 79.8
Atru.chr2.2623 Acer truncatum HOM05D004538 ORTHO05D006068 4.4e-99 365.9 211 87.7
Nitab4.5_0004391g0070 Nicotiana tabacum HOM05D004538 ORTHO05D006068 3.1e-97 359.8 343 60.9
PRCOL_00000259 Prasinoderma coloniale HOM05D004538 ORTHO05D006068 4.2e-94 349.4 331 52.9
Cre02.g082700 Chlamydomonas reinhardtii HOM05D004538 ORTHO05D006068 8.0e-93 345.1 358 51.1
A10p13310 Brassica napus HOM05D004538 ORTHO05D006068 4.8e-90 335.9 218 78.0
SEGI_29632 Sequoiadendron giganteum HOM05D004538 ORTHO05D006068 1.7e-87 327.4 201 77.6
Cc02_g29790 Coffea canephora HOM05D004538 ORTHO05D006068 7.2e-86 322.0 226 74.3
Aqoxy289s001 Aquilegia oxysepala HOM05D004538 ORTHO05D008153 1.5e-75 287.7 211 68.2
Aqoxy2G00269 Aquilegia oxysepala HOM05D004538 ORTHO05D006068 1.6e-72 277.7 174 78.2
SHI46402 Sapria himalayana HOM05D004538 ORTHO05D006068 1.8e-68 264.2 230 63.0
SHI05855 Sapria himalayana HOM05D004538 ORTHO05D006068 2.4e-65 253.8 230 61.7
Haze_27104 Corylus avellana HOM05D004538 ORTHO05D163757 1.2e-61 241.5 366 40.4
Atru.chr2.2696 Acer truncatum HOM05D004538 ORTHO05D006068 5.2e-60 236.1 136 87.5
MSTRG.9067 Avicennia marina HOM05D004538 ORTHO05D006068 5.2e-60 236.1 124 90.3
Haze_26959 Corylus avellana HOM05D004538 ORTHO05D165751 9.2e-57 225.3 291 44.3
SHI05856 Sapria himalayana HOM05D004538 ORTHO05D006068 3.0e-47 193.7 134 72.4
Duzib268G1762 Durio zibethinus HOM05D004538 ORTHO05D006068 3.9e-47 193.4 115 91.3
MSTRG.9065 Avicennia marina HOM05D004538 ORTHO05D006068 1.9e-38 164.5 125 72.8
Atru.chr2.2627 Acer truncatum HOM05D000397 ORTHO05D002023 2.1e-37 161.0 112 77.7
Aqoxy2G00270 Aquilegia oxysepala HOM05D004538 ORTHO05D006068 1.2e-35 155.2 84 88.1
QL03p014007 Quercus lobata HOM05D001565 ORTHO05D005515 2.4e-33 147.5 124 62.1
MSTRG.9077 Avicennia marina HOM05D004538 ORTHO05D006068 9.0e-28 129.0 77 84.4
QL10p039376 Quercus lobata HOM05D004538 ORTHO05D006068 1.1e-22 112.1 86 68.6
Atru.chr2.2679 Acer truncatum HOM05D004538 ORTHO05D052265 2.5e-22 110.9 231 36.4
ATR0499G006 Amborella trichopoda HOM05D004538 ORTHO05D066479 4.8e-21 106.7 117 53.8
MD02G1271500 Malus domestica HOM05D004538 ORTHO05D006068 7.6e-19 99.4 60 88.3
RcHm_v2.0_Chr6g0267421 Rosa chinensis HOM05D004538 ORTHO05D006068 1.4e-17 95.1 60 85.0
Cc02_g29820 Coffea canephora HOM05D004538 ORTHO05D006068 5.1e-15 86.7 68 66.2
QL02p081848 Quercus lobata HOM05D007814 ORTHO05D009902 3.3e-14 84.0 50 78.0
ATR0499G019 Amborella trichopoda HOM05D004538 ORTHO05D006068 5.7e-14 83.2 58 62.1
Atru.chr2.2641 Acer truncatum HOM05D004538 ORTHO05D052874 1.0e-10 72.4 44 77.3


User provided reference genes

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