Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib268G1415 Durio zibethinus HOM05D006003 ORTHO05D007388 1.1e-150 536.6 275 100.0
Gohir.A01G047600 Gossypium hirsutum HOM05D006003 ORTHO05D007388 5.5e-113 411.4 240 85.8
Gorai.002G047000 Gossypium raimondii HOM05D006003 ORTHO05D007388 7.2e-113 411.0 240 85.4
Thecc.07G133000 Theobroma cacao HOM05D006003 ORTHO05D007388 1.6e-112 409.8 240 85.0
Dinv13362 Davidia involucrata HOM05D006003 ORTHO05D007388 1.9e-105 386.3 240 80.0
CSS0003385 Camellia sinensis var. sinensis HOM05D006003 ORTHO05D007388 5.2e-103 378.3 240 79.6
CSS0022288 Camellia sinensis var. sinensis HOM05D006003 ORTHO05D007388 2.0e-102 376.3 240 79.2
Manes.15G098700 Manihot esculenta HOM05D006003 ORTHO05D007388 3.4e-102 375.6 240 77.5
Potri.011G104400 Populus trichocarpa HOM05D006003 ORTHO05D007388 4.4e-102 375.2 241 79.3
Sabra11G0081200 Salix brachista HOM05D006003 ORTHO05D007388 7.5e-102 374.4 241 78.8
Sabra11G0076500 Salix brachista HOM05D006003 ORTHO05D007388 1.8e-100 369.8 247 76.1
Atru.chr2.1938 Acer truncatum HOM05D006003 ORTHO05D007388 2.0e-99 366.3 240 75.8
Hma1.2p1_0050F.1_g028770 Hydrangea macrophylla HOM05D006003 ORTHO05D007388 4.6e-99 365.2 240 76.7
vmacro11973 Vaccinium macrocarpon HOM05D006003 ORTHO05D007388 5.9e-99 364.8 249 77.1
Nn6g34421 Nelumbo nucifera HOM05D006003 ORTHO05D007388 7.8e-99 364.4 241 76.8
Nitab4.5_0000347g0030 Nicotiana tabacum HOM05D006003 ORTHO05D007388 1.0e-98 364.0 240 75.0
Atru.chr2.1967 Acer truncatum HOM05D006003 ORTHO05D007388 1.7e-98 363.2 240 75.4
TWI39G0770 Tripterygium wilfordii HOM05D006003 ORTHO05D007388 2.3e-98 362.8 240 74.2
TAR626G1650 Trochodendron aralioides HOM05D006003 ORTHO05D007388 2.9e-98 362.5 243 75.3
MD11G1270000 Malus domestica HOM05D006003 ORTHO05D007388 5.0e-98 361.7 240 75.4
Nitab4.5_0003230g0040 Nicotiana tabacum HOM05D006003 ORTHO05D007388 1.9e-97 359.8 240 73.3
Ciclev10021233m.g Citrus clementina HOM05D006003 ORTHO05D007388 3.3e-97 359.0 243 74.9
Dinv26706 Davidia involucrata HOM05D006003 ORTHO05D007388 9.5e-97 357.5 233 77.7
Actinidia12605 Actinidia chinensis HOM05D006003 ORTHO05D007388 1.6e-96 356.7 243 76.5
CAN.G375.51 Capsicum annuum HOM05D006003 ORTHO05D007388 3.6e-96 355.5 243 74.1
Rhsim06G0211900 Rhododendron simsii HOM05D006003 ORTHO05D007388 8.0e-96 354.4 262 70.6
PGR031G3165 Punica granatum HOM05D006003 ORTHO05D007388 4.0e-95 352.1 240 73.3
Prupe.4G156300 Prunus persica HOM05D006003 ORTHO05D007388 5.2e-95 351.7 245 72.7
Prupe.4G156400 Prunus persica HOM05D006003 ORTHO05D007388 5.2e-95 351.7 243 72.8
Eucgr.F03233 Eucalyptus grandis HOM05D006003 ORTHO05D007388 2.6e-94 349.4 243 72.8
Cc05_g10700 Coffea canephora HOM05D006003 ORTHO05D007388 9.8e-94 347.4 243 72.4
DCAR_019616 Daucus carota HOM05D006003 ORTHO05D007388 2.2e-93 346.3 246 71.1
CANSAT56G1876 Cannabis sativa HOM05D006003 ORTHO05D007388 2.9e-93 345.9 242 71.9
PGSC0003DMG400007060 Solanum tuberosum HOM05D006003 ORTHO05D007388 3.7e-93 345.5 243 72.4
CsaV3_4G008190 Cucumis sativus L. HOM05D006003 ORTHO05D007388 4.9e-93 345.1 242 71.1
MELO3C016117.2 Cucumis melo HOM05D006003 ORTHO05D007388 6.4e-93 344.7 260 67.7
Eucgr.F01368 Eucalyptus grandis HOM05D006003 ORTHO05D007388 1.4e-92 343.6 243 71.6
HanXRQChr14g0439341 Helianthus annuus HOM05D006003 ORTHO05D007388 1.9e-92 343.2 240 70.8
GSVIVG01014095001 Vitis vinifera HOM05D006003 ORTHO05D007388 2.4e-92 342.8 243 71.6
ClCG07G010140 Citrullus lanatus HOM05D006003 ORTHO05D007388 3.2e-92 342.4 260 66.9
Glyma.13G264900 Glycine max HOM05D006003 ORTHO05D007388 4.1e-92 342.0 240 73.3
Sopen07g030420 Solanum pennellii HOM05D006003 ORTHO05D007388 7.0e-92 341.3 243 72.0
AUR62019651 Chenopodium quinoa HOM05D006003 ORTHO05D007388 9.2e-92 340.9 243 69.1
Gohir.D01G038300 Gossypium hirsutum HOM05D006003 ORTHO05D007388 9.2e-92 340.9 200 85.5
Medtr2g073350 Medicago truncatula HOM05D006003 ORTHO05D007388 1.6e-91 340.1 240 71.2
Ca_03928_v3 Cicer arietinum L. HOM05D006003 ORTHO05D007388 2.0e-91 339.7 240 70.4
Ca_30126_v3 Cicer arietinum L. HOM05D006003 ORTHO05D007388 2.0e-91 339.7 240 70.4
Lj3g0003080 Lotus japonicus HOM05D006003 ORTHO05D007388 4.6e-91 338.6 237 72.6
Sed0005123 Sechium edule HOM05D006003 ORTHO05D007388 4.6e-91 338.6 240 71.2
HanXRQChr13g0389731 Helianthus annuus HOM05D006003 ORTHO05D007388 6.0e-91 338.2 240 70.8
Lalb_Chr20g0109151 Lupinus albus HOM05D006003 ORTHO05D007388 7.8e-91 337.8 242 71.9
TAR624G1186 Trochodendron aralioides HOM05D006003 ORTHO05D007388 7.8e-91 337.8 290 61.4
Lj3g0000598 Lotus japonicus HOM05D006003 ORTHO05D007388 1.3e-90 337.0 237 72.6
CiPaw.11G156000 Carya illinoinensis HOM05D006003 ORTHO05D007388 1.7e-90 336.7 240 71.7
PGR083G1570 Punica granatum HOM05D006003 ORTHO05D007388 1.7e-90 336.7 241 70.5
Ah.04g164020 Amaranthus hybridus HOM05D006003 ORTHO05D007388 2.3e-90 336.3 255 67.8
MD03G1247500 Malus domestica HOM05D006003 ORTHO05D007388 1.9e-89 333.2 240 70.4
Cpa.g.sc77.63 Carica papaya HOM05D006003 ORTHO05D007388 2.5e-89 332.8 240 70.8
Glyma.12G234000 Glycine max HOM05D006003 ORTHO05D007388 4.3e-89 332.0 240 70.0
FAN16G0946 Fragaria x ananassa HOM05D006003 ORTHO05D007388 5.6e-89 331.6 240 68.3
HPP92_006378 Vanilla planifolia HOM05D006003 ORTHO05D007388 7.3e-89 331.3 247 68.0
Solyc07g062150.3 Solanum lycopersicum HOM05D006003 ORTHO05D007388 2.1e-88 329.7 243 70.4
Lj1C824T4 Lonicera japonica HOM05D006003 ORTHO05D007388 1.4e-87 327.0 209 77.5
EL10Ac4g08418 Beta vulgaris HOM05D006003 ORTHO05D007388 1.8e-87 326.6 256 64.8
FvH4_3g17730 Fragaria vesca HOM05D006003 ORTHO05D007388 3.1e-87 325.9 240 67.9
MD11G1270100 Malus domestica HOM05D006003 ORTHO05D007388 3.1e-87 325.9 242 66.5
MSTRG.6692 Avicennia marina HOM05D006003 ORTHO05D007388 1.2e-86 323.9 260 65.8
FAN25G0059 Fragaria x ananassa HOM05D006003 ORTHO05D007388 9.8e-86 320.9 255 64.3
Lj8A146G66 Lonicera japonica HOM05D006003 ORTHO05D007388 1.7e-85 320.1 230 71.3
Haze_09249 Corylus avellana HOM05D006003 ORTHO05D007388 2.9e-85 319.3 240 67.9
Peaxi162Scf00111g01321 Petunia axillaris HOM05D006003 ORTHO05D007388 1.1e-84 317.4 210 74.8
Migut.M00692 Erythranthe guttata HOM05D006003 ORTHO05D007388 1.4e-84 317.0 247 65.6
Oeu005377.2 Olea europaea HOM05D006003 ORTHO05D007388 1.4e-84 317.0 210 74.3
QL08p024148 Quercus lobata HOM05D006003 ORTHO05D007388 9.2e-84 314.3 240 67.5
Oeu059254.1 Olea europaea HOM05D006003 ORTHO05D007388 2.1e-83 313.2 210 74.3
TPR.G12996 Trifolium pratense HOM05D006003 ORTHO05D007388 2.7e-83 312.8 205 73.7
CDE04G1397 Ceratophyllum demersum HOM05D006003 ORTHO05D007388 4.6e-83 312.0 244 65.2
SalBow8G3868 Salvia bowleyana HOM05D006003 ORTHO05D007388 4.6e-83 312.0 240 66.7
Psat5g233200 Pisum sativum HOM05D006003 ORTHO05D007388 7.8e-83 311.2 240 66.7
Lsat_1_v5_gn_9_100380 Lactuca sativa HOM05D006003 ORTHO05D007388 3.9e-82 308.9 241 65.6
Sc16g0007750 Simmondsia chinensis HOM05D006003 ORTHO05D007388 8.6e-82 307.8 210 69.0
SHI27565 Sapria himalayana HOM05D006003 ORTHO05D007388 3.3e-81 305.8 209 70.8
CDE10G0670 Ceratophyllum demersum HOM05D000595 ORTHO05D001274 9.5e-81 304.3 242 61.2
Cfa019519 Carpinus fangiana HOM05D006003 ORTHO05D007388 4.7e-80 302.0 216 69.9
ECA240G1635 Erigeron canadensis HOM05D006003 ORTHO05D007388 1.2e-78 297.4 209 71.3
Thhalv10018897m.g Eutrema salsugineum HOM05D006003 ORTHO05D007388 1.3e-77 293.9 241 63.5
FAN21G1616 Fragaria x ananassa HOM05D006003 ORTHO05D007388 1.7e-77 293.5 240 62.9
Os09g0345700 Oryza sativa ssp. japonica HOM05D006003 ORTHO05D007388 1.7e-77 293.5 253 58.1
unitig_62.g23076 Utricularia gibba HOM05D006003 ORTHO05D007388 1.7e-77 293.5 260 59.6
SGA_v2.0_scaffold181G39767 Striga asiatica HOM05D006003 ORTHO05D007388 2.2e-77 293.1 254 61.4
BcaC08g47430 Brassica carinata HOM05D006003 ORTHO05D007388 1.1e-76 290.8 241 63.9
Sp5g33680 Schrenkiella parvula HOM05D006003 ORTHO05D007388 2.4e-76 289.7 241 62.7
A07p43860 Brassica napus HOM05D006003 ORTHO05D007388 5.4e-76 288.5 241 63.5
BraA07t31893Z Brassica rapa HOM05D006003 ORTHO05D007388 5.4e-76 288.5 241 63.5
THA.LOC104813991 Tarenaya hassleriana HOM05D006003 ORTHO05D007388 7.1e-76 288.1 242 61.2
arahy.Tifrunner.gnm1.ann1.U60PIC Arachis hypogaea HOM05D006003 ORTHO05D007388 9.2e-76 287.7 240 64.2
CARHR072080 Cardamine hirsuta HOM05D006003 ORTHO05D007388 1.2e-75 287.3 241 62.7
PSO675G5422 Papaver somniferum HOM05D006003 ORTHO05D007388 2.1e-75 286.6 261 57.1
BcaB05g25146 Brassica carinata HOM05D006003 ORTHO05D007388 3.5e-75 285.8 239 62.3
BolC6t40268H Brassica oleracea HOM05D006003 ORTHO05D007388 3.5e-75 285.8 241 62.7
BcaC03g15825 Brassica carinata HOM05D006003 ORTHO05D007388 4.6e-75 285.4 241 62.7
C02p35670 Brassica napus HOM05D006003 ORTHO05D007388 4.6e-75 285.4 241 62.7
C06p52490 Brassica napus HOM05D006003 ORTHO05D007388 7.8e-75 284.6 241 62.2
PSO541G5634 Papaver somniferum HOM05D006003 ORTHO05D007388 7.8e-75 284.6 261 56.7
AL2G38990 Arabidopsis lyrata HOM05D006003 ORTHO05D007388 1.3e-74 283.9 241 61.8
BolC2t09587H Brassica oleracea HOM05D006003 ORTHO05D007388 1.3e-74 283.9 241 62.2
COL.COLO4_17472 Corchorus olitorius HOM05D006003 ORTHO05D007388 2.3e-74 283.1 240 65.8
A02p22240 Brassica napus HOM05D006003 ORTHO05D007388 1.1e-73 280.8 241 62.2
AT1G78590 Arabidopsis thaliana HOM05D006003 ORTHO05D007388 1.5e-73 280.4 241 61.0
BraA02t07230Z Brassica rapa HOM05D006003 ORTHO05D007388 1.9e-73 280.0 241 62.2
ATR0602G094 Amborella trichopoda HOM05D006003 ORTHO05D007388 2.5e-73 279.6 204 67.6
Carub.0002s2544 Capsella rubella HOM05D006003 ORTHO05D007388 2.5e-73 279.6 241 61.0
Aa31LG4G2370 Aethionema arabicum HOM05D006003 ORTHO05D007388 5.6e-73 278.5 241 59.8
MBI06_g08515_MAGBIO Magnolia biondii HOM05D006003 ORTHO05D007388 4.4e-70 268.9 209 66.5
THA.LOC104808088 Tarenaya hassleriana HOM05D006003 ORTHO05D007388 4.4e-70 268.9 242 58.7
Phvul.005G076600 Phaseolus vulgaris HOM05D006003 ORTHO05D007388 3.5e-59 232.6 240 55.8
SMO169G0094 Selaginella moellendorffii HOM05D006003 ORTHO05D007388 9.6e-57 224.6 210 56.2
Mapoly0214s0005 Marchantia polymorpha HOM05D006003 ORTHO05D007388 4.0e-55 219.2 253 49.8
Pp3c14_23600 Physcomitrium patens HOM05D006003 ORTHO05D007388 4.0e-55 219.2 209 52.6
Sc03g0010720 Simmondsia chinensis HOM05D006003 ORTHO05D007388 6.9e-55 218.4 209 56.0
CBR_g12698 Chara braunii HOM05D006003 ORTHO05D007388 1.1e-52 211.1 255 46.7
FAN11G1972 Fragaria x ananassa HOM05D006003 ORTHO05D007388 4.6e-51 205.7 192 54.2
RcHm_v2.0_Chr5g0029501 Rosa chinensis HOM05D006003 ORTHO05D007388 8.1e-48 194.9 137 69.3
SalBow7G3240 Salvia bowleyana HOM05D006003 ORTHO05D007388 1.4e-47 194.1 169 55.0
Zm00001eb098430 Zea mays HOM05D006003 ORTHO05D007388 1.4e-39 167.5 128 67.2
AUR62039577 Chenopodium quinoa HOM05D006003 ORTHO05D007388 9.0e-39 164.9 106 69.8
MD03G1248900 Malus domestica HOM05D006003 ORTHO05D007388 3.4e-38 162.9 152 60.5
Psat5g275400 Pisum sativum HOM05D006003 ORTHO05D007388 5.3e-31 139.0 113 61.1
MCO14G555 Micromonas commoda HOM05D006003 ORTHO05D007388 4.6e-27 125.9 212 40.1
RcHm_v2.0_Chr5g0029511 Rosa chinensis HOM05D006003 ORTHO05D007388 3.6e-11 73.2 53 73.6
CDE03G0511 Ceratophyllum demersum HOM05D006003 ORTHO05D007388 1.4e-10 71.2 138 37.0
PRCOL_00004450 Prasinoderma coloniale HOM05D006003 ORTHO05D007388 1.7e-08 64.3 195 31.8


User provided reference genes

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