Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib268G0904 Durio zibethinus HOM05D004533 ORTHO05D005347 2.8e-156 555.4 321 100.0
Thecc.02G326400 Theobroma cacao HOM05D004533 ORTHO05D005347 5.3e-131 471.5 322 88.5
Duzib251G0596 Durio zibethinus HOM05D004533 ORTHO05D005347 9.9e-130 467.2 322 88.5
Duzib248G0866 Durio zibethinus HOM05D004533 ORTHO05D005347 2.5e-117 426.0 323 75.9
Gohir.A03G105900 Gossypium hirsutum HOM05D004533 ORTHO05D005347 3.3e-117 425.6 322 71.4
Gohir.D02G131100 Gossypium hirsutum HOM05D004533 ORTHO05D005347 1.3e-113 413.7 322 73.9
Gorai.005G147000 Gossypium raimondii HOM05D004533 ORTHO05D005347 4.6e-111 405.2 319 73.7
Gohir.D13G084000 Gossypium hirsutum HOM05D004533 ORTHO05D005347 6.0e-111 404.8 324 72.5
Gorai.013G095800 Gossypium raimondii HOM05D004533 ORTHO05D005347 6.0e-111 404.8 324 72.5
Gohir.A13G084500 Gossypium hirsutum HOM05D004533 ORTHO05D005347 4.3e-109 398.7 324 71.9
Manes.01G025900 Manihot esculenta HOM05D004533 ORTHO05D005347 7.4e-101 371.3 323 67.5
Manes.05G112100 Manihot esculenta HOM05D004533 ORTHO05D005347 1.2e-98 364.0 323 73.7
CiPaw.05G123000 Carya illinoinensis HOM05D004533 ORTHO05D005347 2.9e-97 359.4 323 72.8
Potri.008G098200 Populus trichocarpa HOM05D004533 ORTHO05D005347 2.6e-93 346.3 333 71.8
Cfa008857 Carpinus fangiana HOM05D004533 ORTHO05D005347 5.3e-91 338.6 324 71.0
Potri.010G154200 Populus trichocarpa HOM05D004533 ORTHO05D005347 7.7e-90 334.7 334 67.7
QL03p073504 Quercus lobata HOM05D004533 ORTHO05D005347 1.0e-89 334.3 330 62.7
Haze_11876 Corylus avellana HOM05D004533 ORTHO05D005347 1.3e-89 334.0 325 62.5
COL.COLO4_27845 Corchorus olitorius HOM05D004533 ORTHO05D005347 4.2e-88 328.9 342 68.4
Sabra10G0118800 Salix brachista HOM05D004533 ORTHO05D005347 4.7e-87 325.5 334 64.1
Sabra08G0074200 Salix brachista HOM05D004533 ORTHO05D005347 5.7e-85 318.5 335 69.6
TAR629G1049 Trochodendron aralioides HOM05D004533 ORTHO05D005347 4.5e-82 308.9 322 55.3
Dinv20147 Davidia involucrata HOM05D004533 ORTHO05D005347 3.4e-77 292.7 322 61.2
Ciclev10032087m.g Citrus clementina HOM05D004533 ORTHO05D005347 3.7e-76 289.3 343 64.1
Nn4g23503 Nelumbo nucifera HOM05D004533 ORTHO05D005347 3.1e-75 286.2 328 64.0
TAR371G0131 Trochodendron aralioides HOM05D004533 ORTHO05D005347 4.1e-75 285.8 323 60.4
CiPaw.06G093700 Carya illinoinensis HOM05D004533 ORTHO05D005347 4.5e-74 282.3 329 61.1
Phvul.003G039500 Phaseolus vulgaris HOM05D004533 ORTHO05D005347 7.7e-74 281.6 339 56.6
Cpa.g.sc1.160 Carica papaya HOM05D004533 ORTHO05D005347 5.0e-73 278.9 343 60.6
Lalb_Chr10g0099071 Lupinus albus HOM05D004533 ORTHO05D005347 9.4e-72 274.6 324 57.4
Lj2g0015000 Lotus japonicus HOM05D004533 ORTHO05D005347 1.0e-70 271.2 322 56.2
Hma1.2p1_3075F.1_g332390 Hydrangea macrophylla HOM05D004533 ORTHO05D005347 5.7e-69 265.4 340 50.9
Gorai.008G175700 Gossypium raimondii HOM05D004533 ORTHO05D005347 1.7e-68 263.8 318 51.6
TAR374G1471 Trochodendron aralioides HOM05D004533 ORTHO05D005347 5.4e-67 258.8 257 54.5
Dinv34043 Davidia involucrata HOM05D004533 ORTHO05D005347 9.1e-67 258.1 324 54.3
Cc11_g11730 Coffea canephora HOM05D004533 ORTHO05D005347 1.6e-66 257.3 336 51.2
Aqoxy3G03701 Aquilegia oxysepala HOM05D004533 ORTHO05D005347 5.9e-66 255.4 326 52.1
Lalb_Chr17g0341371 Lupinus albus HOM05D004533 ORTHO05D005347 1.3e-65 254.2 324 55.6
Oeu028724.1 Olea europaea HOM05D004533 ORTHO05D005347 5.5e-64 248.8 321 58.9
CSS0048067 Camellia sinensis var. sinensis HOM05D004533 ORTHO05D005347 1.2e-61 241.1 335 53.4
Hma1.2p1_0428F.1_g151070 Hydrangea macrophylla HOM05D004533 ORTHO05D005347 1.5e-61 240.7 264 55.3
Gohir.D12G163100 Gossypium hirsutum HOM05D004533 ORTHO05D005347 2.6e-61 240.0 314 52.9
Rhsim09G0125000 Rhododendron simsii HOM05D004533 ORTHO05D005347 9.8e-61 238.0 335 51.9
Atru.chr11.1592 Acer truncatum HOM05D004533 ORTHO05D005347 1.7e-60 237.3 339 59.3
Gohir.A12G159800 Gossypium hirsutum HOM05D004533 ORTHO05D005347 2.2e-60 236.9 316 53.5
MSTRG.2297 Avicennia marina HOM05D004533 ORTHO05D005347 3.2e-59 233.0 334 47.0
Prupe.1G290400 Prunus persica HOM05D004533 ORTHO05D005347 4.5e-58 229.2 356 52.0
Medtr5g046750 Medicago truncatula HOM05D004533 ORTHO05D005347 2.9e-57 226.5 313 55.0
Glyma.01G063800 Glycine max HOM05D004533 ORTHO05D005347 1.9e-56 223.8 350 49.4
Psat2g098360 Pisum sativum HOM05D004533 ORTHO05D005347 1.6e-55 220.7 309 49.8
Ca_05043_v3 Cicer arietinum L. HOM05D004533 ORTHO05D005347 2.3e-54 216.9 324 54.3
Ca_19594_v3 Cicer arietinum L. HOM05D004533 ORTHO05D005347 2.3e-54 216.9 324 54.3
MD16G1058700 Malus domestica HOM05D004533 ORTHO05D005347 2.0e-53 213.8 350 57.4
Hma1.2p1_0473F.1_g160260 Hydrangea macrophylla HOM05D004533 ORTHO05D005347 2.6e-53 213.4 324 43.2
TPR.G38582 Trifolium pratense HOM05D004533 ORTHO05D005347 7.5e-53 211.8 321 51.1
Eucgr.B03139 Eucalyptus grandis HOM05D004533 ORTHO05D005347 8.3e-52 208.4 344 48.8
Actinidia26533 Actinidia chinensis HOM05D004533 ORTHO05D005347 1.4e-51 207.6 329 48.9
Oeu048133.1 Olea europaea HOM05D004533 ORTHO05D005347 7.0e-51 205.3 321 45.8
Oeu048134.1 Olea europaea HOM05D004533 ORTHO05D005347 7.0e-51 205.3 321 45.8
Oeu020361.1 Olea europaea HOM05D004533 ORTHO05D005347 1.2e-50 204.5 297 50.8
Rhsim12G0073600 Rhododendron simsii HOM05D004533 ORTHO05D005347 1.2e-50 204.5 334 44.3
FAN17G0049 Fragaria x ananassa HOM05D004533 ORTHO05D005347 4.6e-50 202.6 337 55.8
Peaxi162Scf00175g00062 Petunia axillaris HOM05D004533 ORTHO05D005347 6.0e-50 202.2 337 49.6
FvH4_4g29630 Fragaria vesca HOM05D004533 ORTHO05D005347 1.0e-49 201.4 339 55.2
FAN07G1881 Fragaria x ananassa HOM05D004533 ORTHO05D005347 1.0e-49 201.4 340 54.4
FAN12G3098 Fragaria x ananassa HOM05D004533 ORTHO05D005347 1.0e-49 201.4 339 55.2
MD13G1059400 Malus domestica HOM05D004533 ORTHO05D005347 1.3e-49 201.1 350 54.9
FAN22G0793 Fragaria x ananassa HOM05D004533 ORTHO05D005347 1.7e-49 200.7 337 55.5
vmacro01308 Vaccinium macrocarpon HOM05D004533 ORTHO05D005347 1.7e-49 200.7 338 45.0
Sed0020971 Sechium edule HOM05D004533 ORTHO05D005347 3.9e-49 199.5 332 43.7
MSTRG.13457 Avicennia marina HOM05D004533 ORTHO05D005347 2.1e-47 193.7 329 42.9
Glyma.02G121400 Glycine max HOM05D004533 ORTHO05D005347 1.4e-46 191.0 357 45.7
RcHm_v2.0_Chr4g0437861 Rosa chinensis HOM05D004533 ORTHO05D005347 3.1e-46 189.9 347 53.9
TWI79G0987 Tripterygium wilfordii HOM05D004533 ORTHO05D005347 3.1e-46 189.9 342 46.5
Actinidia19907 Actinidia chinensis HOM05D004533 ORTHO05D005347 6.8e-46 188.7 304 49.7
VMungo1215G1442 Vigna mungo HOM05D004533 ORTHO05D005347 1.3e-44 184.5 220 56.4
PSO478G4496 Papaver somniferum HOM05D004533 ORTHO05D005347 6.4e-44 182.2 349 41.8
PSO017G3527 Papaver somniferum HOM05D004533 ORTHO05D005347 1.4e-43 181.0 351 42.5
TWI31G0640 Tripterygium wilfordii HOM05D004533 ORTHO05D005347 1.9e-43 180.6 333 46.8
Nn3g17512 Nelumbo nucifera HOM05D004533 ORTHO05D005347 1.6e-42 177.6 302 54.3
ECA233G1177 Erigeron canadensis HOM05D004533 ORTHO05D005347 2.1e-42 177.2 342 40.6
THA.LOC104798855 Tarenaya hassleriana HOM05D004533 ORTHO05D005347 2.7e-42 176.8 349 49.3
THA.LOC104803161 Tarenaya hassleriana HOM05D004533 ORTHO05D005347 2.7e-42 176.8 349 49.3
THA.LOC104822894 Tarenaya hassleriana HOM05D004533 ORTHO05D005347 2.7e-42 176.8 349 49.3
ATR0827G049 Amborella trichopoda HOM05D004533 ORTHO05D005347 4.6e-42 176.0 307 51.5
ClCG08G010520 Citrullus lanatus HOM05D004533 ORTHO05D005347 4.6e-42 176.0 349 39.8
TWI75G1153 Tripterygium wilfordii HOM05D004533 ORTHO05D005347 6.0e-42 175.6 331 45.3
MELO3C011411.2 Cucumis melo HOM05D004533 ORTHO05D005347 1.3e-41 174.5 348 41.1
CsaV3_6G033770 Cucumis sativus L. HOM05D004533 ORTHO05D005347 5.1e-41 172.6 352 39.5
Actinidia16147 Actinidia chinensis HOM05D004533 ORTHO05D005347 8.6e-41 171.8 328 44.5
Nitab4.5_0000027g0050 Nicotiana tabacum HOM05D004533 ORTHO05D005347 8.1e-39 165.2 320 50.6
arahy.Tifrunner.gnm1.ann1.PV72KB Arachis hypogaea HOM05D004533 ORTHO05D005347 2.3e-38 163.7 380 43.2
Lj6P776T6 Lonicera japonica HOM05D004533 ORTHO05D005347 2.3e-38 163.7 160 58.1
Lsat_1_v5_gn_8_45920 Lactuca sativa HOM05D004533 ORTHO05D005347 4.0e-38 162.9 344 44.8
MSTRG.7732 Avicennia marina HOM05D004533 ORTHO05D005347 6.8e-38 162.2 322 47.5
DCAR_026684 Daucus carota HOM05D004533 ORTHO05D005347 8.9e-38 161.8 338 40.2
DCAR_023748 Daucus carota HOM05D004533 ORTHO05D005347 1.5e-37 161.0 334 43.7
Solyc05g012030.1 Solanum lycopersicum HOM05D004533 ORTHO05D005347 1.3e-36 157.9 344 48.8
arahy.Tifrunner.gnm1.ann1.NK9Z7F Arachis hypogaea HOM05D004533 ORTHO05D005347 1.7e-36 157.5 378 43.1
DCAR_030051 Daucus carota HOM05D004533 ORTHO05D005347 1.7e-36 157.5 332 47.3
BcaB03g15876 Brassica carinata HOM05D004533 ORTHO05D005347 2.2e-36 157.1 346 46.0
MBI16_g39936_MAGBIO Magnolia biondii HOM05D004533 ORTHO05D005347 2.9e-36 156.8 322 36.3
BraA02t06624Z Brassica rapa HOM05D004533 ORTHO05D005347 3.7e-36 156.4 347 47.0
HanXRQChr12g0363201 Helianthus annuus HOM05D004533 ORTHO05D005347 1.4e-35 154.5 331 43.8
Nitab4.5_0006154g0010 Nicotiana tabacum HOM05D004533 ORTHO05D005347 4.1e-35 152.9 313 43.8
ClCG05G023610 Citrullus lanatus HOM05D004533 ORTHO05D005347 5.4e-35 152.5 331 41.4
Sp5g24200 Schrenkiella parvula HOM05D004533 ORTHO05D005347 9.2e-35 151.8 336 46.4
SGA_v2.0_scaffold287G47174 Striga asiatica HOM05D004533 ORTHO05D005347 9.2e-35 151.8 342 46.2
A02p15640 Brassica napus HOM05D004533 ORTHO05D005347 3.5e-34 149.8 347 47.3
Carub.0002s1576 Capsella rubella HOM05D004533 ORTHO05D005347 6.0e-34 149.1 346 46.8
Lsat_1_v5_gn_4_11700 Lactuca sativa HOM05D004533 ORTHO05D005347 1.0e-33 148.3 349 37.2
BraA07t31139Z Brassica rapa HOM05D004533 ORTHO05D005347 1.3e-33 147.9 345 45.5
BcaC08g46370 Brassica carinata HOM05D004533 ORTHO05D005347 3.0e-33 146.7 345 45.5
BolC6t39358H Brassica oleracea HOM05D004533 ORTHO05D005347 3.0e-33 146.7 345 45.5
C06p40740 Brassica napus HOM05D004533 ORTHO05D005347 3.9e-33 146.4 346 46.5
A07p35490 Brassica napus HOM05D004533 ORTHO05D005347 5.1e-33 146.0 348 45.1
Actinidia13399 Actinidia chinensis HOM05D004533 ORTHO05D005347 1.1e-32 144.8 212 53.8
BolC2t08676H Brassica oleracea HOM05D004533 ORTHO05D005347 2.5e-32 143.7 346 46.5
ECA234G4159 Erigeron canadensis HOM05D004533 ORTHO05D005347 2.5e-32 143.7 337 36.5
C02p26000 Brassica napus HOM05D004533 ORTHO05D005347 4.3e-32 142.9 348 46.8
CsaV3_5G033410 Cucumis sativus L. HOM05D004533 ORTHO05D005347 5.6e-32 142.5 325 36.6
Thhalv10018878m.g Eutrema salsugineum HOM05D004533 ORTHO05D005347 6.2e-31 139.0 347 45.8
BcaC03g15057 Brassica carinata HOM05D004533 ORTHO05D005347 8.9e-30 135.2 346 45.1
CARHR062030 Cardamine hirsuta HOM05D004533 ORTHO05D005347 1.5e-29 134.4 344 44.8
Sc11g0002570 Simmondsia chinensis HOM05D004533 ORTHO05D005347 2.6e-29 133.7 343 39.4
Sopen05g006810 Solanum pennellii HOM05D004533 ORTHO05D005347 2.6e-29 133.7 283 51.2
PGSC0003DMG400028307 Solanum tuberosum HOM05D004533 ORTHO05D005347 2.6e-29 133.7 349 40.1
MELO3C012160.2 Cucumis melo HOM05D004533 ORTHO05D005347 3.4e-29 133.3 325 36.6
THA.LOC104821996 Tarenaya hassleriana HOM05D004533 ORTHO05D005347 9.9e-29 131.7 347 43.8
Ah.03g138730 Amaranthus hybridus HOM05D004533 ORTHO05D005347 2.2e-28 130.6 331 34.4
Sed0009680 Sechium edule HOM05D004533 ORTHO05D005347 2.2e-28 130.6 319 36.1
CANSAT64G2295 Cannabis sativa HOM05D004533 ORTHO05D005347 4.9e-28 129.4 387 43.9
AT1G69160 Arabidopsis thaliana HOM05D004533 ORTHO05D005347 3.2e-27 126.7 353 43.9
EL10Ac6g15027 Beta vulgaris HOM05D004533 ORTHO05D005347 7.1e-27 125.6 299 36.8
AL2G28250 Arabidopsis lyrata HOM05D004533 ORTHO05D005347 3.5e-26 123.2 351 43.6
PGR102G1315 Punica granatum HOM05D004533 ORTHO05D005347 6.0e-26 122.5 343 45.2
Aa31LG4G11830 Aethionema arabicum HOM05D004533 ORTHO05D005347 5.6e-24 115.9 303 46.2
Ah.02g126770 Amaranthus hybridus HOM05D004533 ORTHO05D005347 2.1e-23 114.0 337 32.6
DCAR_007202 Daucus carota HOM05D004533 ORTHO05D005347 1.2e-21 108.2 311 37.6
Migut.E00039 Erythranthe guttata HOM05D004533 ORTHO05D005347 1.5e-21 107.8 312 45.2
Sc04g0007440 Simmondsia chinensis HOM05D004533 ORTHO05D005347 2.4e-19 100.5 320 37.5
BcaC08g45911 Brassica carinata HOM05D004533 ORTHO05D005347 1.0e-17 95.1 265 41.5
BcaC08g45912 Brassica carinata HOM05D004533 ORTHO05D005347 3.3e-16 90.1 267 41.2
TAR627G0820 Trochodendron aralioides HOM05D004533 ORTHO05D005347 9.6e-16 88.6 116 50.0
TAR381G0317 Trochodendron aralioides HOM05D004533 ORTHO05D005347 1.6e-15 87.8 119 47.9
PGR119G0103 Punica granatum HOM05D004533 ORTHO05D005347 1.9e-11 74.3 346 35.5
BcaC08g45913 Brassica carinata HOM05D004533 ORTHO05D005347 1.2e-10 71.6 298 37.9
TAR629G3385 Trochodendron aralioides HOM05D004533 ORTHO05D005347 1.2e-10 71.6 147 39.5
CDE02G4104 Ceratophyllum demersum HOM05D004533 ORTHO05D005347 6.0e-10 69.3 290 29.3
TAR452G0003 Trochodendron aralioides HOM05D004533 ORTHO05D005347 7.9e-10 68.9 70 55.7
PSO063G5982 Papaver somniferum HOM05D004533 ORTHO05D005347 1.8e-09 67.8 323 31.3
PSO782G4709 Papaver somniferum HOM05D004533 ORTHO05D005347 3.9e-09 66.6 322 32.6
GSVIVG01012248001 Vitis vinifera HOM05D004533 ORTHO05D005347 5.1e-09 66.2 40 75.0
A06p09760 Brassica napus HOM05D000934 ORTHO05D000746 6.7e-09 65.9 116 44.0
BraA06t24165Z Brassica rapa HOM05D000934 ORTHO05D000746 6.7e-09 65.9 116 44.0
C06p37150 Brassica napus HOM05D004533 ORTHO05D005347 2.5e-08 63.9 186 43.0
BcaC05g25273 Brassica carinata HOM05D014954 ORTHO05D016461 5.6e-08 62.8 113 38.1
C05p11510 Brassica napus HOM05D000934 ORTHO05D000746 5.6e-08 62.8 116 43.1
BolC5t29899H Brassica oleracea HOM05D014954 ORTHO05D016461 5.6e-08 62.8 116 43.1
Carub.0001s1340 Capsella rubella HOM05D014954 ORTHO05D016461 7.4e-08 62.4 126 40.5
Sp1g12240 Schrenkiella parvula HOM05D014954 ORTHO05D016461 2.1e-07 60.8 112 42.9
Thhalv10009936m.g Eutrema salsugineum HOM05D014954 ORTHO05D016461 2.8e-07 60.5 115 40.0
BcaB02g06464 Brassica carinata HOM05D014954 ORTHO05D016461 4.8e-07 59.7 106 45.3
Nitab4.5_0002879g0080 Nicotiana tabacum HOM05D001488 ORTHO05D001456 4.8e-07 59.7 241 32.0
CDE05G0386 Ceratophyllum demersum HOM05D004533 ORTHO05D005347 1.1e-06 58.5 101 34.7
AT1G13670 Arabidopsis thaliana HOM05D014954 ORTHO05D016461 1.4e-06 58.2 111 41.4
Nitab4.5_0002072g0060 Nicotiana tabacum HOM05D001488 ORTHO05D001456 1.8e-06 57.8 247 30.4
AL1G25450 Arabidopsis lyrata HOM05D014954 ORTHO05D016461 2.4e-06 57.4 106 40.6
CARHR014070 Cardamine hirsuta HOM05D014954 ORTHO05D016461 2.4e-06 57.4 117 36.8
Migut.L01171 Erythranthe guttata HOM05D004533 ORTHO05D005347 9.0e-06 55.5 149 36.9


User provided reference genes

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