Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib268G0197 Durio zibethinus HOM05D004311 ORTHO05D005145 3.8e-238 827.8 419 100.0
Thecc.04G184200 Theobroma cacao HOM05D004311 ORTHO05D005145 4.4e-178 628.2 419 78.0
Gorai.011G145800 Gossypium raimondii HOM05D004311 ORTHO05D005145 7.3e-173 610.9 423 75.7
Gohir.A10G134400 Gossypium hirsutum HOM05D004311 ORTHO05D005145 8.0e-172 607.4 423 74.5
Gohir.D10G132100 Gossypium hirsutum HOM05D004311 ORTHO05D005145 3.0e-171 605.5 423 75.2
COL.COLO4_24387 Corchorus olitorius HOM05D004311 ORTHO05D005145 8.9e-155 550.8 444 67.1
Manes.11G116001 Manihot esculenta HOM05D004311 ORTHO05D005145 9.3e-120 434.5 431 55.7
Atru.chr3.1596 Acer truncatum HOM05D004311 ORTHO05D005145 2.7e-119 433.0 414 57.5
Atru.chr5.2612 Acer truncatum HOM05D004311 ORTHO05D005145 9.6e-117 424.5 421 56.1
CiPaw.01G102900 Carya illinoinensis HOM05D004311 ORTHO05D005145 1.1e-115 421.0 419 55.4
Potri.007G124150 Populus trichocarpa HOM05D004311 ORTHO05D005145 1.8e-115 420.2 416 56.0
Actinidia35905 Actinidia chinensis HOM05D004311 ORTHO05D005145 4.2e-112 409.1 430 53.3
TWI34G1341 Tripterygium wilfordii HOM05D004311 ORTHO05D005145 1.3e-110 404.1 430 52.1
Potri.017G036200 Populus trichocarpa HOM05D004311 ORTHO05D005145 1.5e-109 400.6 429 54.3
Cfa015780 Carpinus fangiana HOM05D004311 ORTHO05D005145 5.7e-109 398.7 417 53.5
Ciclev10019191m.g Citrus clementina HOM05D004311 ORTHO05D005145 5.7e-109 398.7 439 53.5
GSVIVG01013563001 Vitis vinifera HOM05D004311 ORTHO05D005145 5.3e-107 392.1 427 52.2
Sabra17G0023900 Salix brachista HOM05D004311 ORTHO05D005145 2.2e-105 386.7 435 51.5
Haze_00714 Corylus avellana HOM05D004311 ORTHO05D005145 8.5e-105 384.8 468 48.3
FAN17G0085 Fragaria x ananassa HOM05D004311 ORTHO05D005145 1.2e-103 380.9 421 52.5
Dinv44218 Davidia involucrata HOM05D004311 ORTHO05D005145 3.9e-102 375.9 378 55.6
Eucgr.A00251 Eucalyptus grandis HOM05D004311 ORTHO05D005145 2.8e-100 369.8 410 54.6
FvH4_4g11290 Fragaria vesca HOM05D004311 ORTHO05D005145 3.1e-99 366.3 421 51.5
THA.LOC104821356 Tarenaya hassleriana HOM05D004311 ORTHO05D005145 5.3e-99 365.5 417 49.9
FAN07G0445 Fragaria x ananassa HOM05D004311 ORTHO05D005145 5.9e-98 362.1 413 51.6
Peaxi162Scf00319g00915 Petunia axillaris HOM05D004311 ORTHO05D005145 2.9e-97 359.8 424 50.9
Rhsim09G0031800 Rhododendron simsii HOM05D004311 ORTHO05D005145 2.5e-96 356.7 528 42.0
QL10p045440 Quercus lobata HOM05D004311 ORTHO05D005145 1.2e-95 354.4 597 40.4
Sopen09g036480 Solanum pennellii HOM05D004311 ORTHO05D005145 2.7e-95 353.2 411 49.9
Sed0012126 Sechium edule HOM05D004311 ORTHO05D005145 3.0e-94 349.7 408 50.5
Solyc09g098560.2 Solanum lycopersicum HOM05D004311 ORTHO05D005145 8.8e-94 348.2 411 49.6
Cc03_g13030 Coffea canephora HOM05D004311 ORTHO05D005145 1.1e-93 347.8 429 49.9
CAN.G710.65 Capsicum annuum HOM05D004311 ORTHO05D005145 1.5e-93 347.4 430 48.6
Nitab4.5_0006710g0020 Nicotiana tabacum HOM05D004311 ORTHO05D005145 1.7e-92 344.0 406 50.0
PGR083G0820 Punica granatum HOM05D004311 ORTHO05D005145 8.2e-92 341.7 405 49.1
vmacro00589 Vaccinium macrocarpon HOM05D004311 ORTHO05D005145 1.2e-90 337.8 334 55.1
Lj6A60T46 Lonicera japonica HOM05D004311 ORTHO05D005145 2.6e-90 336.7 332 56.6
CANSAT11G1749 Cannabis sativa HOM05D004311 ORTHO05D005145 3.4e-90 336.3 443 47.4
MELO3C017696.2 Cucumis melo HOM05D004311 ORTHO05D005145 3.4e-90 336.3 422 47.9
Ca_11399_v3 Cicer arietinum L. HOM05D004311 ORTHO05D005145 1.1e-88 331.3 428 46.3
Ca_11402_v3 Cicer arietinum L. HOM05D004311 ORTHO05D005145 1.1e-88 331.3 428 46.3
Ca_29593_v3 Cicer arietinum L. HOM05D004311 ORTHO05D005145 1.1e-88 331.3 428 46.3
Medtr1g116530 Medicago truncatula HOM05D004311 ORTHO05D005145 2.5e-88 330.1 421 48.7
CsaV3_4G003570 Cucumis sativus L. HOM05D004311 ORTHO05D005145 9.4e-88 328.2 427 46.4
Actinidia33018 Actinidia chinensis HOM05D004311 ORTHO05D005145 3.6e-87 326.2 375 49.9
Sc19g0002150 Simmondsia chinensis HOM05D004311 ORTHO05D005145 4.7e-87 325.9 404 44.8
TPR.G10413 Trifolium pratense HOM05D004311 ORTHO05D005145 8.0e-87 325.1 410 48.0
SGA_v2.0_scaffold12G06156 Striga asiatica HOM05D004311 ORTHO05D005145 1.4e-86 324.3 427 46.8
Psat6g241440 Pisum sativum HOM05D004311 ORTHO05D005145 3.0e-86 323.2 401 48.6
Glyma.20G245800 Glycine max HOM05D004311 ORTHO05D005145 3.9e-86 322.8 413 48.4
Nitab4.5_0000526g0040 Nicotiana tabacum HOM05D004311 ORTHO05D005145 4.4e-85 319.3 280 60.4
Phvul.007G004100 Phaseolus vulgaris HOM05D004311 ORTHO05D005145 7.4e-85 318.5 423 46.8
RcHm_v2.0_Chr4g0407531 Rosa chinensis HOM05D004311 ORTHO05D005145 1.3e-84 317.8 333 55.6
arahy.Tifrunner.gnm1.ann1.D3CYL9 Arachis hypogaea HOM05D004311 ORTHO05D005145 1.7e-84 317.4 407 46.7
arahy.Tifrunner.gnm1.ann1.TTS68P Arachis hypogaea HOM05D004311 ORTHO05D005145 2.2e-84 317.0 407 46.7
Hund12225 Selenicereus undatus HOM05D004311 ORTHO05D005145 2.8e-84 316.6 402 45.8
Lsat_1_v5_gn_6_54900 Lactuca sativa HOM05D004311 ORTHO05D005145 6.3e-84 315.5 402 45.0
MBI08_g33649_MAGBIO Magnolia biondii HOM05D004311 ORTHO05D005145 1.8e-83 313.9 406 45.6
Glyma.10G295800 Glycine max HOM05D004311 ORTHO05D005145 2.4e-83 313.5 412 47.6
HanXRQChr07g0186701 Helianthus annuus HOM05D004311 ORTHO05D005145 3.1e-83 313.2 402 45.8
SalBow3G3821 Salvia bowleyana HOM05D004311 ORTHO05D005145 4.1e-83 312.8 413 46.7
TAR375G1135 Trochodendron aralioides HOM05D004311 ORTHO05D005145 9.1e-83 311.6 464 44.2
MSTRG.20570 Avicennia marina HOM05D004311 ORTHO05D005145 2.6e-82 310.1 400 47.2
VMungo0720G0448 Vigna mungo HOM05D004311 ORTHO05D005145 2.6e-82 310.1 399 46.9
EL10Ac3g06308 Beta vulgaris HOM05D004311 ORTHO05D005145 5.9e-82 308.9 400 46.0
MD04G1038300 Malus domestica HOM05D004311 ORTHO05D005145 7.7e-82 308.5 287 59.6
Nn2g11494 Nelumbo nucifera HOM05D004311 ORTHO05D005145 7.7e-82 308.5 414 45.2
Lalb_Chr21g0307601 Lupinus albus HOM05D004311 ORTHO05D005145 1.3e-81 307.8 410 45.9
Lj5g0018220 Lotus japonicus HOM05D004311 ORTHO05D005145 8.5e-81 305.1 397 47.4
AUR62002610 Chenopodium quinoa HOM05D004311 ORTHO05D005145 1.1e-75 288.1 398 44.7
Sabra17G0023400 Salix brachista HOM05D004311 ORTHO05D005145 1.1e-75 288.1 302 55.0
Aqoxy5G04052 Aquilegia oxysepala HOM05D004311 ORTHO05D005145 1.8e-75 287.3 446 42.6
ClCG07G015850 Citrullus lanatus HOM05D004311 ORTHO05D005145 1.8e-75 287.3 280 55.4
AUR62030033 Chenopodium quinoa HOM05D004311 ORTHO05D005145 9.1e-75 285.0 403 42.2
Nitab4.5_0004962g0030 Nicotiana tabacum HOM05D004311 ORTHO05D005145 1.2e-74 284.6 359 47.6
Dinv22688 Davidia involucrata HOM05D004311 ORTHO05D005145 1.3e-73 281.2 349 48.1
Migut.G01038 Erythranthe guttata HOM05D004311 ORTHO05D005145 2.9e-73 280.0 405 43.7
unitig_8.g3035 Utricularia gibba HOM05D004311 ORTHO05D005145 3.8e-73 279.6 397 43.3
Sp4g24640 Schrenkiella parvula HOM05D004311 ORTHO05D005145 1.1e-72 278.1 418 42.1
Carub.0004s2496 Capsella rubella HOM05D004311 ORTHO05D005145 7.2e-72 275.4 416 41.3
Aa31LG2G1780 Aethionema arabicum HOM05D004311 ORTHO05D005145 1.6e-71 274.2 422 42.2
BcaNung03232 Brassica carinata HOM05D004311 ORTHO05D005145 3.6e-71 273.1 400 42.0
CDE09G0340 Ceratophyllum demersum HOM05D004311 ORTHO05D005145 1.0e-70 271.6 401 41.9
Duzib151G0942 Durio zibethinus HOM05D004311 ORTHO05D005145 8.8e-70 268.5 214 66.4
CDE02G0781 Ceratophyllum demersum HOM05D004311 ORTHO05D005145 4.4e-69 266.2 398 42.5
BcaC02g12437 Brassica carinata HOM05D004311 ORTHO05D005145 1.7e-68 264.2 403 40.0
TWI60G0507 Tripterygium wilfordii HOM05D004311 ORTHO05D005145 1.7e-68 264.2 274 51.5
BcaC02g07234 Brassica carinata HOM05D004311 ORTHO05D005145 2.8e-68 263.5 400 42.0
HPP92_009171 Vanilla planifolia HOM05D004311 ORTHO05D005145 6.3e-68 262.3 431 39.9
BraA05t19299Z Brassica rapa HOM05D004311 ORTHO05D005145 3.1e-67 260.0 403 39.7
A05p03080 Brassica napus HOM05D004311 ORTHO05D005145 5.4e-67 259.2 403 39.5
C04p03710 Brassica napus HOM05D004311 ORTHO05D005145 5.4e-67 259.2 403 38.0
BolC4t22005H Brassica oleracea HOM05D004311 ORTHO05D005145 7.0e-67 258.8 403 37.7
C04p69770 Brassica napus HOM05D004311 ORTHO05D005145 2.7e-66 256.9 400 41.5
Prupe.1G189100 Prunus persica HOM05D004311 ORTHO05D005145 3.5e-66 256.5 254 57.1
SHI06503 Sapria himalayana HOM05D004311 ORTHO05D005145 3.5e-66 256.5 294 51.4
AT1G54380 Arabidopsis thaliana HOM05D004311 ORTHO05D005145 5.9e-66 255.8 416 39.7
DCAR_028443 Daucus carota HOM05D004311 ORTHO05D005145 1.5e-64 251.1 446 38.8
CARHR055450 Cardamine hirsuta HOM05D004311 ORTHO05D005145 4.2e-64 249.6 419 41.3
Os11g0293300 Oryza sativa ssp. japonica HOM05D004311 ORTHO05D005145 5.2e-62 242.7 413 40.7
ATR0743G139 Amborella trichopoda HOM05D004311 ORTHO05D005145 6.8e-62 242.3 400 39.8
Cpa.g.sc73.18 Carica papaya HOM05D004311 ORTHO05D005145 1.5e-61 241.1 227 58.1
Zm00001eb248350 Zea mays HOM05D004311 ORTHO05D005145 2.6e-61 240.4 410 40.2
PSO675G5961 Papaver somniferum HOM05D004311 ORTHO05D005145 4.4e-61 239.6 436 36.0
FAN22G0235 Fragaria x ananassa HOM05D004311 ORTHO05D005820 8.3e-60 235.3 249 55.0
PSO017G7323 Papaver somniferum HOM05D004311 ORTHO05D005145 4.1e-59 233.0 433 36.0
SEGI_09077 Sequoiadendron giganteum HOM05D004311 ORTHO05D005145 4.3e-56 223.0 297 44.8
Oeu007717.1 Olea europaea HOM05D004311 ORTHO05D005145 5.6e-48 196.1 243 45.7
Lalb_Chr02g0144311 Lupinus albus HOM05D004311 ORTHO05D005145 2.3e-46 190.7 266 44.7
Pp3c18_5230 Physcomitrium patens HOM05D004311 ORTHO05D005145 1.9e-43 181.0 417 35.7
SMO273G0052 Selaginella moellendorffii HOM05D004311 ORTHO05D005145 5.4e-43 179.5 276 39.5
SMO351G0426 Selaginella moellendorffii HOM05D004311 ORTHO05D005145 1.2e-42 178.3 278 39.9
BcaB06g29252 Brassica carinata HOM05D004311 ORTHO05D005145 1.0e-41 175.3 396 32.1
BcaNung05216 Brassica carinata HOM05D004311 ORTHO05D005145 9.5e-40 168.7 396 31.8
CBR_g48670 Chara braunii HOM05D004311 ORTHO05D005145 1.2e-39 168.3 366 35.2
AagrBONN_evm.TU.Sc2ySwM_228.1282 Anthoceros agrestis HOM05D004311 ORTHO05D005145 4.0e-38 163.3 544 27.8
Prupe.1G188800 Prunus persica HOM05D004311 ORTHO05D005145 2.9e-36 157.1 175 49.1
Haze_00722 Corylus avellana HOM05D001997 ORTHO05D004620 1.7e-33 147.9 188 50.0
SMO174G0256 Selaginella moellendorffii HOM05D004311 ORTHO05D005145 2.3e-33 147.5 277 35.0
Thhalv10017985m.g Eutrema salsugineum HOM05D004311 ORTHO05D005145 6.6e-33 146.0 216 44.4
Mapoly0064s0042 Marchantia polymorpha HOM05D004311 ORTHO05D005145 3.8e-28 130.2 115 58.3
TWI60G1520 Tripterygium wilfordii HOM05D004311 ORTHO05D005145 3.2e-27 127.1 147 50.3
Nitab4.5_0001049g0080 Nicotiana tabacum HOM05D004311 ORTHO05D005145 9.6e-24 115.5 177 39.5
BcaNung00544 Brassica carinata HOM05D004311 ORTHO05D005145 2.1e-18 97.8 85 55.3
MCO03G002 Micromonas commoda HOM05D004311 ORTHO05D005145 2.3e-17 94.4 283 29.7
Cpa.g.sc1876.1 Carica papaya HOM05D004311 ORTHO05D005145 1.2e-13 82.0 86 51.2
Sabra07G0100500 Salix brachista HOM05D004311 ORTHO05D005145 2.6e-13 80.9 76 51.3
RcHm_v2.0_Chr4g0407521 Rosa chinensis HOM05D004311 ORTHO05D005145 2.2e-12 77.8 76 51.3
Hma1.2p1_0429F.1_g151120 Hydrangea macrophylla HOM05D004311 ORTHO05D005145 8.4e-12 75.9 85 44.7
CARHR137590 Cardamine hirsuta HOM05D004311 ORTHO05D005145 4.6e-10 70.1 48 68.8
BolC4t28477H Brassica oleracea HOM05D004311 ORTHO05D005145 1.8e-09 68.2 52 57.7
CANSAT78G0609 Cannabis sativa HOM05D004311 ORTHO05D005145 5.1e-09 66.6 84 45.2
THA.LOC104798849 Tarenaya hassleriana HOM05D004311 ORTHO05D005145 6.7e-09 66.2 58 55.2
SGA_v2.0_scaffold290G47298 Striga asiatica HOM05D002786 ORTHO05D003493 8.7e-09 65.9 84 45.2
CSS0021437 Camellia sinensis var. sinensis HOM05D004311 ORTHO05D005145 1.1e-08 65.5 93 37.6
CANSAT01G2758 Cannabis sativa HOM05D004311 ORTHO05D005145 1.1e-08 65.5 84 45.2
Lj6A60T47 Lonicera japonica HOM05D004311 ORTHO05D005145 3.3e-08 63.9 94 39.4
Cre09.g405650 Chlamydomonas reinhardtii HOM05D004311 ORTHO05D005145 7.4e-08 62.8 69 44.9
vmacro00590 Vaccinium macrocarpon HOM05D004311 ORTHO05D005145 7.4e-08 62.8 80 42.5
SEGI_08315 Sequoiadendron giganteum HOM05D004311 ORTHO05D005145 4.8e-07 60.1 52 57.7
PGSC0003DMG400021611 Solanum tuberosum HOM05D004311 ORTHO05D005145 1.1e-06 58.9 84 42.9


User provided reference genes

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