Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib268G0178 Durio zibethinus HOM05D004075 ORTHO05D004538 1.0e-221 773.1 398 100.0
Thecc.01G411500 Theobroma cacao HOM05D004075 ORTHO05D004538 1.1e-154 550.4 405 73.3
COL.COLO4_23930 Corchorus olitorius HOM05D004075 ORTHO05D004538 4.1e-117 425.6 414 61.8
Gohir.A08G144800 Gossypium hirsutum HOM05D004075 ORTHO05D004538 6.8e-104 381.7 422 56.6
Manes.10G143700 Manihot esculenta HOM05D004075 ORTHO05D004538 1.2e-103 380.9 406 53.2
Gorai.004G172900 Gossypium raimondii HOM05D004075 ORTHO05D004538 2.0e-103 380.2 424 57.3
Gohir.D08G165800 Gossypium hirsutum HOM05D004075 ORTHO05D004538 2.0e-100 370.2 424 56.1
Sabra09G0045700 Salix brachista HOM05D004075 ORTHO05D004538 4.3e-98 362.5 417 53.5
QL04p006698 Quercus lobata HOM05D004075 ORTHO05D004538 3.1e-96 356.3 411 53.3
QL04p007893 Quercus lobata HOM05D004075 ORTHO05D004538 4.4e-95 352.4 411 52.8
TWI53G1782 Tripterygium wilfordii HOM05D004075 ORTHO05D004538 7.5e-95 351.7 410 53.4
TWI73G1281 Tripterygium wilfordii HOM05D004075 ORTHO05D004538 1.1e-93 347.8 425 51.3
Ciclev10031906m.g Citrus clementina HOM05D004075 ORTHO05D004538 7.8e-92 341.7 407 50.9
Cpa.g.sc245.12 Carica papaya HOM05D004075 ORTHO05D004538 3.9e-91 339.3 409 52.3
Prupe.2G012400 Prunus persica HOM05D004075 ORTHO05D004538 1.1e-90 337.8 438 47.9
Dinv43449 Davidia involucrata HOM05D004075 ORTHO05D004538 5.6e-90 335.5 410 49.8
Potri.001G267600 Populus trichocarpa HOM05D004075 ORTHO05D004538 1.2e-89 334.3 412 50.7
CSS0027632 Camellia sinensis var. sinensis HOM05D004075 ORTHO05D004538 4.7e-89 332.4 410 51.5
Atru.chr11.2656 Acer truncatum HOM05D004075 ORTHO05D004538 8.1e-89 331.6 419 50.4
CSS0023689 Camellia sinensis var. sinensis HOM05D004075 ORTHO05D004538 8.1e-89 331.6 412 51.5
GSVIVG01032083001 Vitis vinifera HOM05D004075 ORTHO05D004538 6.8e-88 328.6 408 50.0
Glyma.15G273700 Glycine max HOM05D004075 ORTHO05D004538 1.5e-87 327.4 410 50.2
Phvul.005G020800 Phaseolus vulgaris HOM05D004075 ORTHO05D004538 1.1e-85 321.2 411 49.1
FvH4_7g00980 Fragaria vesca HOM05D004075 ORTHO05D004538 1.4e-85 320.9 444 46.4
Glyma.08G155000 Glycine max HOM05D004075 ORTHO05D004538 1.6e-84 317.4 409 49.4
arahy.Tifrunner.gnm1.ann1.J4WSSI Arachis hypogaea HOM05D004075 ORTHO05D004538 4.6e-84 315.8 417 49.6
FAN01G1840 Fragaria x ananassa HOM05D004075 ORTHO05D004538 4.6e-84 315.8 443 45.6
MD07G1009400 Malus domestica HOM05D004075 ORTHO05D004538 1.7e-83 313.9 442 46.4
Haze_03220 Corylus avellana HOM05D004075 ORTHO05D004538 6.6e-83 312.0 397 48.9
MD02G1313000 Malus domestica HOM05D004075 ORTHO05D004538 9.6e-82 308.1 441 44.9
TAR636G2153 Trochodendron aralioides HOM05D004075 ORTHO05D004538 2.8e-81 306.6 425 48.0
Hma1.2p1_0293F.1_g116200 Hydrangea macrophylla HOM05D004075 ORTHO05D004538 2.4e-80 303.5 410 49.0
VMungo1080G0731 Vigna mungo HOM05D004075 ORTHO05D004538 2.4e-80 303.5 431 47.1
vmacro13660 Vaccinium macrocarpon HOM05D004075 ORTHO05D004538 3.1e-80 303.1 408 47.8
Lj9A631T51 Lonicera japonica HOM05D004075 ORTHO05D004538 4.0e-80 302.8 410 47.1
Dinv09359 Davidia involucrata HOM05D004075 ORTHO05D004538 5.2e-80 302.4 365 52.3
PGR031G2189 Punica granatum HOM05D004075 ORTHO05D004538 2.6e-79 300.1 410 45.6
arahy.Tifrunner.gnm1.ann1.N8UE6G Arachis hypogaea HOM05D004075 ORTHO05D004538 7.6e-79 298.5 421 46.3
CANSAT80G2751 Cannabis sativa HOM05D004075 ORTHO05D004538 7.6e-79 298.5 438 44.7
Medtr3g028600 Medicago truncatula HOM05D004075 ORTHO05D004538 2.9e-78 296.6 409 46.9
FAN06G1907 Fragaria x ananassa HOM05D004075 ORTHO05D004538 1.9e-77 293.9 430 44.2
Actinidia21555 Actinidia chinensis HOM05D004075 ORTHO05D004538 2.4e-77 293.5 413 47.5
FAN10G0771 Fragaria x ananassa HOM05D004075 ORTHO05D004538 3.2e-77 293.1 432 44.9
Eucgr.J01269 Eucalyptus grandis HOM05D004075 ORTHO05D004538 5.4e-77 292.4 419 45.3
Psat5g204000 Pisum sativum HOM05D004075 ORTHO05D004538 5.4e-77 292.4 406 47.5
Rhsim07G0055100 Rhododendron simsii HOM05D004075 ORTHO05D004538 9.3e-77 291.6 407 46.4
RcHm_v2.0_Chr1g0315881 Rosa chinensis HOM05D004075 ORTHO05D004538 1.6e-76 290.8 453 43.7
TAR633G2155 Trochodendron aralioides HOM05D004075 ORTHO05D004538 1.0e-75 288.1 427 46.4
Lalb_Chr25g0283121 Lupinus albus HOM05D004075 ORTHO05D004538 1.3e-75 287.7 408 45.8
FAN03G2231 Fragaria x ananassa HOM05D004075 ORTHO05D004538 1.1e-74 284.6 434 43.8
CsaV3_7G031100 Cucumis sativus L. HOM05D004075 ORTHO05D004538 9.6e-74 281.6 414 44.0
Potri.009G061900 Populus trichocarpa HOM05D004075 ORTHO05D004538 2.8e-73 280.0 407 45.5
Lj3g0017759 Lotus japonicus HOM05D004075 ORTHO05D004538 8.1e-73 278.5 410 43.2
ClCG09G004200 Citrullus lanatus HOM05D004075 ORTHO05D004538 1.8e-72 277.3 411 43.8
Ca_26459_v3 Cicer arietinum L. HOM05D004075 ORTHO05D004538 5.3e-72 275.8 411 44.5
Manes.07G005500 Manihot esculenta HOM05D004075 ORTHO05D004538 1.2e-71 274.6 354 48.6
Oeu063166.1 Olea europaea HOM05D004075 ORTHO05D004538 1.2e-71 274.6 410 43.4
Oeu063168.1 Olea europaea HOM05D004075 ORTHO05D004538 1.2e-71 274.6 410 43.4
MSTRG.5020 Avicennia marina HOM05D004075 ORTHO05D004538 7.6e-71 271.9 409 43.3
Nn2g15469 Nelumbo nucifera HOM05D004075 ORTHO05D004538 2.2e-70 270.4 444 42.6
Peaxi162Scf00428g00317 Petunia axillaris HOM05D004075 ORTHO05D004538 2.9e-70 270.0 412 42.7
PGSC0003DMG400006871 Solanum tuberosum HOM05D004075 ORTHO05D004538 1.4e-69 267.7 419 43.7
Oeu047570.1 Olea europaea HOM05D004075 ORTHO05D004538 3.2e-69 266.5 426 42.0
Actinidia20669 Actinidia chinensis HOM05D004075 ORTHO05D004538 9.3e-69 265.0 401 44.9
Cc02_g27890 Coffea canephora HOM05D004075 ORTHO05D004538 9.3e-69 265.0 411 43.6
Nitab4.5_0002477g0020 Nicotiana tabacum HOM05D004075 ORTHO05D004538 1.2e-68 264.6 417 43.2
Nitab4.5_0000634g0160 Nicotiana tabacum HOM05D004075 ORTHO05D004538 2.1e-68 263.8 417 42.4
Sed0000159 Sechium edule HOM05D004075 ORTHO05D004538 8.7e-67 258.5 412 42.7
TPR.G32989 Trifolium pratense HOM05D004075 ORTHO05D004538 9.6e-66 255.0 406 41.9
Sp5g10180 Schrenkiella parvula HOM05D004075 ORTHO05D004538 1.6e-65 254.2 427 41.2
CAN.G1820.5 Capsicum annuum HOM05D004075 ORTHO05D004538 1.8e-64 250.8 422 40.8
THA.LOC104819075 Tarenaya hassleriana HOM05D004075 ORTHO05D004538 1.8e-64 250.8 412 41.7
Aa31LG10G7190 Aethionema arabicum HOM05D004075 ORTHO05D004538 3.1e-64 250.0 425 40.0
ECA240G2351 Erigeron canadensis HOM05D004075 ORTHO05D004538 6.9e-64 248.8 409 43.5
Sc11g0009230 Simmondsia chinensis HOM05D004075 ORTHO05D004538 6.9e-64 248.8 366 45.6
vmacro21184 Vaccinium macrocarpon HOM05D004075 ORTHO05D004538 2.0e-63 247.3 401 44.4
MELO3C023547.2 Cucumis melo HOM05D004075 ORTHO05D004538 3.4e-63 246.5 404 42.3
Migut.O00687 Erythranthe guttata HOM05D004075 ORTHO05D004538 5.8e-63 245.7 421 43.2
HanXRQChr03g0065861 Helianthus annuus HOM05D004075 ORTHO05D004538 5.8e-63 245.7 412 42.0
AL5G32670 Arabidopsis lyrata HOM05D004075 ORTHO05D004538 7.6e-63 245.4 437 40.7
DCAR_029668 Daucus carota HOM05D004075 ORTHO05D004538 1.7e-62 244.2 421 42.0
Carub.0005s1844 Capsella rubella HOM05D004075 ORTHO05D004538 1.9e-61 240.7 428 39.7
MSTRG.28073 Avicennia marina HOM05D004075 ORTHO05D004538 3.2e-61 240.0 413 41.2
AT3G52110 Arabidopsis thaliana HOM05D004075 ORTHO05D004538 9.3e-61 238.4 432 40.3
SalBow8G1917 Salvia bowleyana HOM05D004075 ORTHO05D004538 7.9e-60 235.3 404 41.3
Solyc01g087080.4 Solanum lycopersicum HOM05D004075 ORTHO05D004538 1.3e-59 234.6 416 40.1
SalBow6G5115 Salvia bowleyana HOM05D004075 ORTHO05D004538 3.9e-59 233.0 406 41.4
PSO339G0483 Papaver somniferum HOM05D004075 ORTHO05D004538 6.7e-59 232.3 447 39.6
CARHR161820 Cardamine hirsuta HOM05D004075 ORTHO05D004538 1.9e-58 230.7 432 39.1
PSO384G3961 Papaver somniferum HOM05D004075 ORTHO05D004538 3.3e-58 229.9 448 39.3
THA.LOC104826677 Tarenaya hassleriana HOM05D004075 ORTHO05D004538 4.3e-58 229.6 410 40.0
SGA_v2.0_scaffold5G02972 Striga asiatica HOM05D004075 ORTHO05D004538 2.8e-57 226.9 421 42.3
Haze_02822 Corylus avellana HOM05D004075 ORTHO05D004538 4.8e-57 226.1 302 48.3
Rhsim01G0129700 Rhododendron simsii HOM05D004075 ORTHO05D004538 6.9e-56 222.2 297 49.5
BcaNung06093 Brassica carinata HOM05D004075 ORTHO05D004538 9.0e-56 221.9 429 38.2
C08p27380 Brassica napus HOM05D004075 ORTHO05D004538 9.0e-56 221.9 429 38.2
BraA09t39980Z Brassica rapa HOM05D004075 ORTHO05D004538 1.2e-55 221.5 428 37.9
Lsat_1_v5_gn_9_117060 Lactuca sativa HOM05D004075 ORTHO05D004538 2.6e-55 220.3 398 39.2
THA.LOC104817133 Tarenaya hassleriana HOM05D004075 ORTHO05D004538 2.6e-55 220.3 350 42.9
A09p45170 Brassica napus HOM05D004075 ORTHO05D004538 3.4e-55 219.9 428 37.6
BolC8t50355H Brassica oleracea HOM05D004075 ORTHO05D004538 1.3e-54 218.0 429 37.3
BcaB01g00440 Brassica carinata HOM05D004075 ORTHO05D004538 1.7e-54 217.6 429 37.8
HanXRQChr13g0420751 Helianthus annuus HOM05D004075 ORTHO05D004538 6.5e-54 215.7 400 40.0
BcaB02g08587 Brassica carinata HOM05D004075 ORTHO05D004538 1.1e-53 214.9 439 38.0
EL10Ac2g04319 Beta vulgaris HOM05D004075 ORTHO05D004538 1.6e-52 211.1 414 38.6
Thhalv10010636m.g Eutrema salsugineum HOM05D004075 ORTHO05D004538 3.5e-52 209.9 314 45.5
MBI01_g18891_MAGBIO Magnolia biondii HOM05D004075 ORTHO05D004538 3.5e-52 209.9 433 38.6
BraA04t16422Z Brassica rapa HOM05D004075 ORTHO05D004538 1.5e-50 204.5 438 38.1
CiPaw.13G003900 Carya illinoinensis HOM05D004075 ORTHO05D004538 7.4e-50 202.2 259 49.8
A04p07270 Brassica napus HOM05D004075 ORTHO05D004538 3.7e-49 199.9 439 37.4
Sopen01g034160 Solanum pennellii HOM05D004075 ORTHO05D004538 1.5e-47 194.5 344 40.1
BolC4t25672H Brassica oleracea HOM05D004075 ORTHO05D004538 2.0e-47 194.1 436 38.5
BcaC02g09281 Brassica carinata HOM05D004075 ORTHO05D004538 1.7e-46 191.0 436 38.3
C04p40860 Brassica napus HOM05D004075 ORTHO05D004538 2.2e-46 190.7 436 38.1
Ah.10g038860 Amaranthus hybridus HOM05D004075 ORTHO05D004538 3.2e-45 186.8 424 34.9
Atru.chr2.310 Acer truncatum HOM05D004075 ORTHO05D004538 7.2e-45 185.7 236 53.0
Aqoxy2G00118 Aquilegia oxysepala HOM05D004075 ORTHO05D004538 3.1e-40 170.2 415 32.3
AUR62023061 Chenopodium quinoa HOM05D004075 ORTHO05D004538 8.8e-35 152.1 283 39.9
Dinv18084 Davidia involucrata HOM05D004075 ORTHO05D004538 2.9e-30 137.1 283 33.9
QL07p021680 Quercus lobata HOM05D004075 ORTHO05D004538 2.7e-28 130.6 281 36.7
HPP92_020393 Vanilla planifolia HOM05D004075 ORTHO05D004538 1.0e-27 128.6 432 31.0
Haze_19908 Corylus avellana HOM05D004075 ORTHO05D004538 3.0e-27 127.1 276 36.2
Zm00001eb402070 Zea mays HOM05D004075 ORTHO05D004538 5.1e-27 126.3 451 29.9
Lsat_1_v5_gn_1_107340 Lactuca sativa HOM05D004075 ORTHO05D004538 8.8e-27 125.6 278 34.2
Manes.08G048400 Manihot esculenta HOM05D004075 ORTHO05D004538 3.3e-26 123.6 279 37.3
CDE10G0025 Ceratophyllum demersum HOM05D004075 ORTHO05D004538 4.4e-26 123.2 413 30.0
Thecc.05G162200 Theobroma cacao HOM05D004075 ORTHO05D004538 7.4e-26 122.5 279 35.1
COL.COLO4_28674 Corchorus olitorius HOM05D004075 ORTHO05D004538 1.7e-25 121.3 286 33.9
MD12G1066800 Malus domestica HOM05D004075 ORTHO05D004538 2.8e-25 120.6 244 38.1
AUR62009380 Chenopodium quinoa HOM05D004075 ORTHO05D004538 3.7e-25 120.2 148 50.0
Cfa016858 Carpinus fangiana HOM05D004075 ORTHO05D004538 6.3e-25 119.4 271 36.5
CiPaw.10G031200 Carya illinoinensis HOM05D004075 ORTHO05D004538 6.3e-25 119.4 274 36.5
ECA248G1140 Erigeron canadensis HOM05D004075 ORTHO05D004538 6.3e-25 119.4 280 33.6
Duzib106G1725 Durio zibethinus HOM05D004075 ORTHO05D004538 1.1e-24 118.6 273 34.4
Potri.006G054900 Populus trichocarpa HOM05D004075 ORTHO05D004538 2.4e-24 117.5 285 34.0
Ca_08481_v3 Cicer arietinum L. HOM05D004075 ORTHO05D004538 4.1e-24 116.7 239 35.6
ATR0605G345 Amborella trichopoda HOM05D004075 ORTHO05D004538 5.3e-24 116.3 238 35.3
Peaxi162Scf00337g00818 Petunia axillaris HOM05D004075 ORTHO05D004538 1.2e-23 115.2 219 37.9
Prupe.7G067300 Prunus persica HOM05D004075 ORTHO05D004538 1.6e-23 114.8 253 35.6
unitig_578.g16697 Utricularia gibba HOM05D004075 ORTHO05D004538 3.5e-23 113.6 396 27.8
CANSAT80G1662 Cannabis sativa HOM05D004075 ORTHO05D004538 5.9e-23 112.8 221 36.2
Duzib093G1674 Durio zibethinus HOM05D004075 ORTHO05D004538 1.3e-22 111.7 226 37.2
Rhsim07G0166600 Rhododendron simsii HOM05D004075 ORTHO05D004538 1.7e-22 111.3 203 42.4
Zm00001eb005640 Zea mays HOM05D004075 ORTHO05D004538 1.7e-22 111.3 353 29.5
AUR62044097 Chenopodium quinoa HOM05D004075 ORTHO05D004538 5.0e-22 109.8 210 41.0
Glyma.03G139500 Glycine max HOM05D004075 ORTHO05D004538 1.6e-20 104.8 256 34.4
Lj1g0004317 Lotus japonicus HOM05D004075 ORTHO05D004538 2.1e-20 104.4 279 31.2
RcHm_v2.0_Chr3g0481111 Rosa chinensis HOM05D004075 ORTHO05D004538 2.1e-20 104.4 257 32.7
Os03g0174200 Oryza sativa ssp. japonica HOM05D004075 ORTHO05D004538 2.7e-20 104.0 414 27.1
Phvul.001G136500 Phaseolus vulgaris HOM05D004075 ORTHO05D004538 3.6e-20 103.6 276 30.8
Lalb_Chr25g0287431 Lupinus albus HOM05D004075 ORTHO05D004538 4.7e-20 103.2 275 31.6
VMungo1383G2046 Vigna mungo HOM05D004075 ORTHO05D004538 6.1e-20 102.8 237 32.9
FAN09G1122 Fragaria x ananassa HOM05D004075 ORTHO05D004538 4.0e-19 100.1 249 32.5
TPR.G3891 Trifolium pratense HOM05D004075 ORTHO05D004538 6.7e-19 99.4 281 30.2
Migut.N01589 Erythranthe guttata HOM05D004075 ORTHO05D004538 1.1e-18 98.6 153 45.1
FAN02G0713 Fragaria x ananassa HOM05D004075 ORTHO05D004538 3.7e-17 93.6 242 31.8
Medtr7g092270 Medicago truncatula HOM05D004075 ORTHO05D004538 8.2e-17 92.4 283 30.4
Psat0s1894g0080 Pisum sativum HOM05D004075 ORTHO05D004538 1.1e-16 92.0 280 31.4
Atru.chr1.1036 Acer truncatum HOM05D004075 ORTHO05D004538 7.0e-16 89.4 237 33.8
SEGI_00378 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 1.6e-15 88.2 62 61.3
SEGI_33290 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 2.0e-15 87.8 62 61.3
Sabra16G0056300 Salix brachista HOM05D004075 ORTHO05D004538 2.7e-15 87.4 70 51.4
SEGI_02901 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 5.9e-15 86.3 62 61.3
SEGI_25355 Sequoiadendron giganteum HOM05D000006 ORTHO05D004538 5.9e-15 86.3 62 61.3
CARHR117420 Cardamine hirsuta HOM05D001890 ORTHO05D004538 2.2e-14 84.3 120 47.5
Rhsim01G0129600 Rhododendron simsii HOM05D004075 ORTHO05D004538 2.9e-14 84.0 121 45.5
SEGI_06755 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 1.5e-13 81.6 57 64.9
VMungo1383G1333 Vigna mungo HOM05D004075 ORTHO05D004538 1.4e-11 75.1 51 62.7
BcaB01g00444 Brassica carinata HOM05D004075 ORTHO05D004538 6.8e-11 72.8 181 34.8
Dinv00534 Davidia involucrata HOM05D004075 ORTHO05D004538 1.2e-10 72.0 49 65.3
MD16G1127600 Malus domestica HOM05D002407 ORTHO05D002476 5.0e-06 56.6 81 44.4


User provided reference genes

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