Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib268G0079 Durio zibethinus HOM05D006736 ORTHO05D008459 1.1e-53 213.0 105 100.0
Duzib170G0862 Durio zibethinus HOM05D006736 ORTHO05D008459 5.9e-47 190.7 106 90.6
Thecc.07G008000 Theobroma cacao HOM05D006736 ORTHO05D008459 1.7e-33 146.0 107 69.2
COL.COLO4_07740 Corchorus olitorius HOM05D006736 ORTHO05D008459 3.5e-31 138.3 102 74.5
Cfa021889 Carpinus fangiana HOM05D006736 ORTHO05D008459 5.3e-24 114.4 105 61.9
QL08p003180 Quercus lobata HOM05D006736 ORTHO05D008459 3.8e-22 108.2 107 58.9
Eucgr.F02027 Eucalyptus grandis HOM05D006736 ORTHO05D008459 1.1e-21 106.7 101 59.4
Gohir.D01G078200 Gossypium hirsutum HOM05D006736 ORTHO05D008459 1.2e-20 103.2 89 59.6
Gorai.002G102800 Gossypium raimondii HOM05D006736 ORTHO05D008459 1.2e-20 103.2 89 59.6
CiPaw.11G206800 Carya illinoinensis HOM05D006736 ORTHO05D008459 2.7e-20 102.1 110 54.5
Haze_09864 Corylus avellana HOM05D004577 ORTHO05D005062 6.1e-20 100.9 99 58.6
Gohir.A01G093700 Gossypium hirsutum HOM05D006736 ORTHO05D008459 6.1e-20 100.9 89 58.4
Medtr3g461010 Medicago truncatula HOM05D006736 ORTHO05D008459 5.2e-19 97.8 112 51.8
Prupe.6G028200 Prunus persica HOM05D006736 ORTHO05D008459 6.8e-19 97.4 106 50.0
FvH4_3g42280 Fragaria vesca HOM05D006736 ORTHO05D008459 4.4e-18 94.7 112 49.1
FAN11G0661 Fragaria x ananassa HOM05D006736 ORTHO05D008459 4.4e-18 94.7 112 49.1
FAN25G3397 Fragaria x ananassa HOM05D006736 ORTHO05D008459 4.4e-18 94.7 112 49.1
Gohir.A13G130900 Gossypium hirsutum HOM05D006736 ORTHO05D008459 4.4e-18 94.7 88 58.0
FAN16G2066 Fragaria x ananassa HOM05D002691 ORTHO05D003304 9.8e-18 93.6 112 48.2
Cpa.g.sc12.109 Carica papaya HOM05D006736 ORTHO05D008459 1.3e-17 93.2 112 55.4
Psat5g166560 Pisum sativum HOM05D006736 ORTHO05D008459 1.7e-17 92.8 108 52.8
RcHm_v2.0_Chr5g0075611 Rosa chinensis HOM05D006736 ORTHO05D008459 2.2e-17 92.4 101 50.5
Gohir.D13G134200 Gossypium hirsutum HOM05D006736 ORTHO05D008459 6.3e-17 90.9 88 56.8
Gorai.013G150500 Gossypium raimondii HOM05D006736 ORTHO05D008459 6.3e-17 90.9 88 56.8
Lalb_Chr20g0114121 Lupinus albus HOM05D006736 ORTHO05D008459 1.1e-16 90.1 105 51.4
TPR.G17947 Trifolium pratense HOM05D006736 ORTHO05D008459 1.1e-16 90.1 107 52.3
ClCG09G021530 Citrullus lanatus HOM05D006736 ORTHO05D008459 1.8e-16 89.4 102 50.0
CARHR269350 Cardamine hirsuta HOM05D006736 ORTHO05D008459 7.0e-16 87.4 78 62.8
Phvul.006G059230 Phaseolus vulgaris HOM05D006736 ORTHO05D008459 7.0e-16 87.4 106 50.0
CsaV3_7G023850 Cucumis sativus L. HOM05D006736 ORTHO05D008459 9.1e-16 87.0 80 53.8
MELO3C024968.2 Cucumis melo HOM05D006736 ORTHO05D008459 3.5e-15 85.1 81 55.6
Lalb_Chr15g0082301 Lupinus albus HOM05D006736 ORTHO05D008459 5.9e-15 84.3 105 48.6
Sp6g17830 Schrenkiella parvula HOM05D006736 ORTHO05D008459 5.9e-15 84.3 91 52.7
FAN21G1732 Fragaria x ananassa HOM05D006736 ORTHO05D008459 1.0e-14 83.6 88 50.0
VMungo0540G0896 Vigna mungo HOM05D006736 ORTHO05D008459 1.3e-14 83.2 100 51.0
BcaC04g20175 Brassica carinata HOM05D006736 ORTHO05D008459 5.0e-14 81.3 97 47.4
Thhalv10015819m.g Eutrema salsugineum HOM05D006736 ORTHO05D008459 5.0e-14 81.3 95 50.5
GSVIVG01014741001 Vitis vinifera HOM05D006736 ORTHO05D008459 5.0e-14 81.3 102 48.0
TWI38G1827 Tripterygium wilfordii HOM05D006736 ORTHO05D008459 6.5e-14 80.9 71 64.8
Aa31LG3G11890 Aethionema arabicum HOM05D006736 ORTHO05D008459 8.5e-14 80.5 101 48.5
Glyma.08G332400 Glycine max HOM05D006736 ORTHO05D008459 8.5e-14 80.5 110 48.2
Glyma.18G074500 Glycine max HOM05D006736 ORTHO05D008459 8.5e-14 80.5 112 47.3
AT5G55980 Arabidopsis thaliana HOM05D006736 ORTHO05D008459 1.1e-13 80.1 88 50.0
BcaB01g04378 Brassica carinata HOM05D006736 ORTHO05D008459 1.1e-13 80.1 95 49.5
ClCG10G003900 Citrullus lanatus HOM05D006736 ORTHO05D008459 1.1e-13 80.1 98 48.0
ClCG10G004060 Citrullus lanatus HOM05D006736 ORTHO05D008459 1.1e-13 80.1 98 48.0
Ciclev10010675m.g Citrus clementina HOM05D006736 ORTHO05D008459 1.5e-13 79.7 102 50.0
AL8G31560 Arabidopsis lyrata HOM05D006736 ORTHO05D008459 1.9e-13 79.3 73 60.3
Potri.001G371400 Populus trichocarpa HOM05D006736 ORTHO05D008459 1.9e-13 79.3 102 50.0
Sabra11G0088600 Salix brachista HOM05D006736 ORTHO05D008459 1.9e-13 79.3 100 48.0
Lj6g0005510 Lotus japonicus HOM05D006736 ORTHO05D008459 2.5e-13 79.0 96 45.8
BcaB08g35964 Brassica carinata HOM05D006736 ORTHO05D008459 3.2e-13 78.6 112 48.2
LjContig00081g0022969 Lotus japonicus HOM05D006736 ORTHO05D008459 3.2e-13 78.6 100 42.0
Sabra16G0244100 Salix brachista HOM05D006736 ORTHO05D008459 4.2e-13 78.2 86 52.3
C09p46970 Brassica napus HOM05D006736 ORTHO05D008459 5.5e-13 77.8 94 51.1
BolC9t57545H Brassica oleracea HOM05D006736 ORTHO05D008459 7.2e-13 77.4 83 54.2
A10p13210 Brassica napus HOM05D006736 ORTHO05D008459 9.5e-13 77.0 52 71.2
BraA10t43419Z Brassica rapa HOM05D006736 ORTHO05D008459 9.5e-13 77.0 52 71.2
CsaV3_3G003890 Cucumis sativus L. HOM05D006736 ORTHO05D008459 1.2e-12 76.6 98 43.9
Manes.01G003400 Manihot esculenta HOM05D006736 ORTHO05D008459 1.2e-12 76.6 54 66.7
TAR624G0983 Trochodendron aralioides HOM05D006736 ORTHO05D008459 1.2e-12 76.6 92 54.3
EL10Ac4g07540 Beta vulgaris HOM05D006736 ORTHO05D008459 3.6e-12 75.1 111 45.0
Carub.0008s1632 Capsella rubella HOM05D006736 ORTHO05D008459 3.6e-12 75.1 67 64.2
Glyma.14G011700 Glycine max HOM05D006736 ORTHO05D008459 3.6e-12 75.1 111 42.3
Manes.05G200400 Manihot esculenta HOM05D006736 ORTHO05D008459 6.1e-12 74.3 78 55.1
CARHR087850 Cardamine hirsuta HOM05D006736 ORTHO05D008459 8.0e-12 73.9 108 44.4
Sp3g11420 Schrenkiella parvula HOM05D006736 ORTHO05D008459 8.0e-12 73.9 103 43.7
MELO3C014070.2 Cucumis melo HOM05D006736 ORTHO05D008459 1.0e-11 73.6 98 43.9
TWI39G1297 Tripterygium wilfordii HOM05D006736 ORTHO05D008459 1.4e-11 73.2 74 62.2
Peaxi162Scf00047g02119 Petunia axillaris HOM05D006736 ORTHO05D008459 1.8e-11 72.8 78 53.8
Sed0023265 Sechium edule HOM05D006736 ORTHO05D008459 1.8e-11 72.8 100 45.0
Aqoxy4G01886 Aquilegia oxysepala HOM05D006736 ORTHO05D008459 2.3e-11 72.4 93 50.5
Hma1.2p1_0599F.1_g186970 Hydrangea macrophylla HOM05D006736 ORTHO05D008459 3.0e-11 72.0 78 52.6
Rhsim06G0178800 Rhododendron simsii HOM05D006736 ORTHO05D008459 4.0e-11 71.6 70 51.4
Peaxi162Scf01164g00020 Petunia axillaris HOM05D006736 ORTHO05D008459 5.2e-11 71.2 81 56.8
Sopen07g023750 Solanum pennellii HOM05D006736 ORTHO05D008459 6.8e-11 70.9 78 55.1
Oeu036994.1 Olea europaea HOM05D006736 ORTHO05D008459 1.2e-10 70.1 79 50.6
AL3G25020 Arabidopsis lyrata HOM05D006736 ORTHO05D008459 2.0e-10 69.3 106 43.4
BcaB06g25478 Brassica carinata HOM05D006736 ORTHO05D008459 3.4e-10 68.6 103 42.7
Solyc07g045200.1 Solanum lycopersicum HOM05D006736 ORTHO05D008459 4.4e-10 68.2 50 68.0
CSS0010283 Camellia sinensis var. sinensis HOM05D006736 ORTHO05D008459 7.5e-10 67.4 79 51.9
Carub.0003s1260 Capsella rubella HOM05D006736 ORTHO05D008459 7.5e-10 67.4 104 40.4
Thhalv10021795m.g Eutrema salsugineum HOM05D006736 ORTHO05D008459 7.5e-10 67.4 109 43.1
DCAR_008749 Daucus carota HOM05D006736 ORTHO05D008459 1.3e-09 66.6 91 44.0
AT3G13227 Arabidopsis thaliana HOM05D006736 ORTHO05D008459 1.7e-09 66.2 107 41.1
BcaC05g29199 Brassica carinata HOM05D006736 ORTHO05D008459 2.2e-09 65.9 85 45.9
Solyc12g006220.3 Solanum lycopersicum HOM05D006736 ORTHO05D008459 2.2e-09 65.9 80 52.5
BcaC01g04005 Brassica carinata HOM05D006736 ORTHO05D008459 2.8e-09 65.5 98 43.9
A03p38090 Brassica napus HOM05D006736 ORTHO05D008459 2.8e-09 65.5 98 43.9
C03p46220 Brassica napus HOM05D006736 ORTHO05D008459 2.8e-09 65.5 98 43.9
BolC3t16893H Brassica oleracea HOM05D006736 ORTHO05D008459 2.8e-09 65.5 98 43.9
BraA03t12962Z Brassica rapa HOM05D006736 ORTHO05D008459 2.8e-09 65.5 98 43.9
CSS0048788 Camellia sinensis var. sinensis HOM05D006736 ORTHO05D008459 2.8e-09 65.5 83 49.4
Sopen12g002170 Solanum pennellii HOM05D006736 ORTHO05D008459 2.8e-09 65.5 80 52.5
BcaB04g18747 Brassica carinata HOM05D006736 ORTHO05D008459 3.7e-09 65.1 92 44.6
Atru.chr2.3834 Acer truncatum HOM05D006736 ORTHO05D008459 4.9e-09 64.7 97 44.3
Sc03g0011540 Simmondsia chinensis HOM05D006736 ORTHO05D008459 4.9e-09 64.7 92 43.5
BolC5t34141H Brassica oleracea HOM05D006736 ORTHO05D008459 8.3e-09 63.9 103 41.7
THA.LOC104822717 Tarenaya hassleriana HOM05D006736 ORTHO05D008459 8.3e-09 63.9 114 40.4
Aa31LG8G450 Aethionema arabicum HOM05D006736 ORTHO05D008459 1.4e-08 63.2 87 43.7
Ah.06g181490 Amaranthus hybridus HOM05D006736 ORTHO05D008459 1.4e-08 63.2 110 42.7
PGR083G0815 Punica granatum HOM05D006736 ORTHO05D008459 1.4e-08 63.2 105 41.0
CSS0024852 Camellia sinensis var. sinensis HOM05D006736 ORTHO05D008459 1.8e-08 62.8 83 48.2
Duzib248G0486 Durio zibethinus HOM05D007247 ORTHO05D009208 3.1e-08 62.0 70 44.3
Migut.M00067 Erythranthe guttata HOM05D006736 ORTHO05D008459 4.1e-08 61.6 104 42.3
Sed0014616 Sechium edule HOM05D006736 ORTHO05D008459 4.1e-08 61.6 88 39.8
Gohir.A03G134800 Gossypium hirsutum HOM05D007247 ORTHO05D009208 5.4e-08 61.2 100 36.0
Gohir.D02G158400 Gossypium hirsutum HOM05D007247 ORTHO05D009208 5.4e-08 61.2 100 36.0
Gorai.005G177800 Gossypium raimondii HOM05D007247 ORTHO05D009208 5.4e-08 61.2 100 36.0
Thecc.02G261000 Theobroma cacao HOM05D007247 ORTHO05D009208 5.4e-08 61.2 96 38.5
QL08p003109 Quercus lobata HOM05D006736 ORTHO05D008459 9.2e-08 60.5 82 45.1
arahy.Tifrunner.gnm1.ann1.FR49Y0 Arachis hypogaea HOM05D006736 ORTHO05D008459 1.2e-07 60.1 51 60.8
arahy.Tifrunner.gnm1.ann1.P4RFEM Arachis hypogaea HOM05D006736 ORTHO05D008459 1.2e-07 60.1 51 60.8
ECA234G2793 Erigeron canadensis HOM05D006736 ORTHO05D008459 1.2e-07 60.1 79 44.3
MD03G1035000 Malus domestica HOM05D006736 ORTHO05D008459 1.6e-07 59.7 62 59.7
Oeu019702.1 Olea europaea HOM05D006736 ORTHO05D008459 2.0e-07 59.3 67 47.8
QL03p057801 Quercus lobata HOM05D007247 ORTHO05D009208 2.7e-07 58.9 46 60.9
Duzib251G0560 Durio zibethinus HOM05D007247 ORTHO05D009208 3.5e-07 58.5 61 50.8
MBI14_g39127_MAGBIO Magnolia biondii HOM05D006736 ORTHO05D008459 4.5e-07 58.2 90 44.4
Atru.chr11.2143 Acer truncatum HOM05D007247 ORTHO05D009208 7.7e-07 57.4 58 50.0
CiPaw.06G067400 Carya illinoinensis HOM05D007247 ORTHO05D009208 7.7e-07 57.4 43 60.5
SGA_v2.0_scaffold49G18393 Striga asiatica HOM05D006736 ORTHO05D008459 7.7e-07 57.4 86 45.3
Haze_12254 Corylus avellana HOM05D007247 ORTHO05D009208 1.0e-06 57.0 46 58.7
Migut.H01277 Erythranthe guttata HOM05D006736 ORTHO05D008459 1.0e-06 57.0 70 50.0
MSTRG.13349 Avicennia marina HOM05D007247 ORTHO05D009208 2.3e-06 55.8 67 44.8
Cfa009217 Carpinus fangiana HOM05D007247 ORTHO05D009208 3.8e-06 55.1 57 52.6
Cfa009218 Carpinus fangiana HOM05D007247 ORTHO05D009208 3.8e-06 55.1 46 56.5
Dinv15222 Davidia involucrata HOM05D007247 ORTHO05D009208 3.8e-06 55.1 106 37.7
ATR0751G116 Amborella trichopoda HOM05D006736 ORTHO05D008459 8.6e-06 53.9 98 37.8
Glyma.08G281800 Glycine max HOM05D007247 ORTHO05D009208 8.6e-06 53.9 75 38.7
Phvul.008G281200 Phaseolus vulgaris HOM05D006736 ORTHO05D008459 8.6e-06 53.9 96 37.5
VMungo0251G0750 Vigna mungo HOM05D007247 ORTHO05D009208 8.6e-06 53.9 63 46.0


User provided reference genes

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