Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib264G0970 Durio zibethinus HOM05D002705 ORTHO05D009765 2.4e-157 558.9 307 100.0
Thecc.01G162500 Theobroma cacao HOM05D002705 ORTHO05D009765 1.7e-115 419.9 308 75.0
Gohir.D04G036300 Gossypium hirsutum HOM05D002705 ORTHO05D009765 6.0e-100 368.2 310 67.7
Gorai.012G041100 Gossypium raimondii HOM05D002705 ORTHO05D009765 6.0e-100 368.2 310 67.7
Gohir.A05G379200 Gossypium hirsutum HOM05D002705 ORTHO05D009765 2.3e-99 366.3 310 73.5
COL.COLO4_08449 Corchorus olitorius HOM05D000244 ORTHO05D009765 7.1e-85 318.2 321 62.6
QL08p044244 Quercus lobata HOM05D002705 ORTHO05D009765 6.3e-57 225.3 262 46.9
Ciclev10033364m.g Citrus clementina HOM05D002705 ORTHO05D009765 9.4e-53 211.5 266 45.5
Atru.chr6.2088 Acer truncatum HOM05D002705 ORTHO05D009765 1.0e-51 208.0 264 44.3
Potri.005G202300 Populus trichocarpa HOM05D002705 ORTHO05D009765 3.9e-51 206.1 259 44.8
GSVIVG01020876001 Vitis vinifera HOM05D002705 ORTHO05D009765 1.5e-50 204.1 255 44.7
Nn3g20892 Nelumbo nucifera HOM05D002705 ORTHO05D009765 1.7e-49 200.7 252 42.9
Cpa.g.sc50.86 Carica papaya HOM05D002705 ORTHO05D009765 2.8e-49 199.9 266 45.1
Dinv00192 Davidia involucrata HOM05D002705 ORTHO05D009765 4.8e-49 199.1 253 46.2
Ca_12230_v3 Cicer arietinum L. HOM05D002705 ORTHO05D009765 2.0e-47 193.7 263 42.6
PGSC0003DMG400021284 Solanum tuberosum HOM05D002705 ORTHO05D009765 2.0e-47 193.7 265 43.4
TAR627G0723 Trochodendron aralioides HOM05D002705 ORTHO05D009765 4.5e-47 192.6 262 42.0
TPR.G16998 Trifolium pratense HOM05D002705 ORTHO05D009765 5.0e-46 189.1 262 42.0
Nn4g26472 Nelumbo nucifera HOM05D002705 ORTHO05D009765 1.5e-45 187.6 262 42.0
CSS0039583 Camellia sinensis var. sinensis HOM05D002705 ORTHO05D009765 1.9e-45 187.2 307 41.4
FAN05G3181 Fragaria x ananassa HOM05D002705 ORTHO05D004955 9.4e-45 184.9 259 43.6
Medtr3g048300 Medicago truncatula HOM05D002705 ORTHO05D009765 1.6e-44 184.1 264 40.5
Nitab4.5_0002027g0160 Nicotiana tabacum HOM05D002705 ORTHO05D009765 1.6e-44 184.1 261 39.8
Peaxi162Scf00035g00292 Petunia axillaris HOM05D002705 ORTHO05D009765 3.6e-44 183.0 261 40.2
ClCG09G022450 Citrullus lanatus HOM05D002705 ORTHO05D009765 6.1e-44 182.2 255 42.4
arahy.Tifrunner.gnm1.ann1.4LV4GA Arachis hypogaea HOM05D002705 ORTHO05D009765 8.0e-44 181.8 274 40.5
FvH4_6g38280 Fragaria vesca HOM05D002705 ORTHO05D009765 1.4e-43 181.0 259 43.6
FAN14G4218 Fragaria x ananassa HOM05D002705 ORTHO05D009765 1.4e-43 181.0 259 43.6
Prupe.3G173400 Prunus persica HOM05D002705 ORTHO05D009765 1.4e-43 181.0 265 42.6
arahy.Tifrunner.gnm1.ann1.Y3CUXW Arachis hypogaea HOM05D002705 ORTHO05D009765 3.0e-43 179.9 276 39.5
MELO3C014476.2 Cucumis melo HOM05D002705 ORTHO05D009765 3.0e-43 179.9 258 39.9
CsaV3_6G038120 Cucumis sativus L. HOM05D002705 ORTHO05D009765 1.2e-42 177.9 255 40.0
FAN09G3459 Fragaria x ananassa HOM05D002705 ORTHO05D009765 4.4e-42 176.0 259 42.1
Hma1.2p1_0529F.1_g173240 Hydrangea macrophylla HOM05D002705 ORTHO05D009765 9.7e-42 174.9 259 42.5
Solyc10g007750.1 Solanum lycopersicum HOM05D002705 ORTHO05D009765 9.7e-42 174.9 260 40.4
Glyma.18G107200 Glycine max HOM05D002705 ORTHO05D009765 1.3e-41 174.5 276 39.1
FAN02G0759 Fragaria x ananassa HOM05D002705 ORTHO05D009765 1.4e-40 171.0 165 54.5
MBI10_g34778_MAGBIO Magnolia biondii HOM05D002705 ORTHO05D009765 1.4e-40 171.0 188 45.2
Sed0010957 Sechium edule HOM05D002705 ORTHO05D009765 1.4e-40 171.0 256 39.1
Manes.02G084700 Manihot esculenta HOM05D002705 ORTHO05D009765 4.1e-40 169.5 262 38.5
Lj6g0006663 Lotus japonicus HOM05D002705 ORTHO05D009765 5.3e-40 169.1 263 39.5
MSTRG.6743 Avicennia marina HOM05D002705 ORTHO05D009765 2.7e-39 166.8 252 35.3
Migut.M00492 Erythranthe guttata HOM05D002705 ORTHO05D009765 2.7e-39 166.8 261 37.2
Sed0024385 Sechium edule HOM05D002705 ORTHO05D009765 3.5e-39 166.4 162 53.7
Sc21g0001660 Simmondsia chinensis HOM05D002705 ORTHO05D009765 3.5e-39 166.4 264 39.4
Rhsim06G0115800 Rhododendron simsii HOM05D002705 ORTHO05D009765 4.5e-39 166.0 260 41.9
VMungo0540G0513 Vigna mungo HOM05D002705 ORTHO05D009765 5.9e-39 165.6 259 39.8
DCAR_009797 Daucus carota HOM05D002705 ORTHO05D009765 7.7e-39 165.2 162 53.1
Lalb_Chr03g0031241 Lupinus albus HOM05D002705 ORTHO05D009765 1.9e-37 160.6 263 39.2
Phvul.006G032900 Phaseolus vulgaris HOM05D002705 ORTHO05D009765 2.5e-37 160.2 258 38.8
AUR62027890 Chenopodium quinoa HOM05D005614 ORTHO05D006759 4.2e-37 159.5 260 36.5
Lsat_1_v5_gn_5_149781 Lactuca sativa HOM05D002705 ORTHO05D009765 2.7e-36 156.8 268 38.1
Aqoxy1G01839 Aquilegia oxysepala HOM05D002705 ORTHO05D009765 3.6e-36 156.4 189 43.9
AUR62019050 Chenopodium quinoa HOM05D005614 ORTHO05D006759 4.7e-36 156.0 259 37.5
Actinidia06118 Actinidia chinensis HOM05D002705 ORTHO05D009765 1.0e-35 154.8 257 39.7
Psat5g181640 Pisum sativum HOM05D002705 ORTHO05D009765 1.0e-35 154.8 162 50.0
HanXRQChr01g0007061 Helianthus annuus HOM05D002705 ORTHO05D009765 5.2e-35 152.5 167 49.1
PSO675G7613 Papaver somniferum HOM05D002705 ORTHO05D009765 5.2e-35 152.5 263 38.4
Ah.05g170870 Amaranthus hybridus HOM05D005614 ORTHO05D006759 8.8e-35 151.8 254 37.8
SGA_v2.0_scaffold70G23654 Striga asiatica HOM05D002705 ORTHO05D009765 4.8e-33 146.0 261 35.6
TWI59G0299 Tripterygium wilfordii HOM05D002705 ORTHO05D009765 4.8e-33 146.0 170 45.3
Carub.0004s2537 Capsella rubella HOM05D002705 ORTHO05D009765 1.1e-32 144.8 157 51.6
CARHR137970 Cardamine hirsuta HOM05D002705 ORTHO05D009765 1.1e-32 144.8 161 48.4
SalBow8G3518 Salvia bowleyana HOM05D002705 ORTHO05D009765 1.1e-32 144.8 266 32.3
AT2G42900 Arabidopsis thaliana HOM05D002705 ORTHO05D009765 1.8e-32 144.1 163 47.9
THA.LOC104802278 Tarenaya hassleriana HOM05D002705 ORTHO05D009765 4.1e-32 142.9 265 35.5
BraA05t19329Z Brassica rapa HOM05D002705 ORTHO05D009765 7.0e-32 142.1 260 34.6
Sp4g25030 Schrenkiella parvula HOM05D002705 ORTHO05D009765 9.1e-32 141.7 164 45.1
Thhalv10017067m.g Eutrema salsugineum HOM05D002705 ORTHO05D009765 2.0e-31 140.6 260 34.6
A05p03430 Brassica napus HOM05D002705 ORTHO05D009765 1.0e-30 138.3 261 33.7
C04p04000 Brassica napus HOM05D002705 ORTHO05D009765 1.3e-30 137.9 260 34.2
BcaC02g12424 Brassica carinata HOM05D002705 ORTHO05D009765 6.5e-30 135.6 164 43.3
BolC4t22036H Brassica oleracea HOM05D002705 ORTHO05D009765 6.5e-30 135.6 164 43.3
Sabra05G0153700 Salix brachista HOM05D002705 ORTHO05D009765 8.5e-30 135.2 220 38.2
Eucgr.K01214 Eucalyptus grandis HOM05D002705 ORTHO05D009765 1.5e-29 134.4 217 38.7
RcHm_v2.0_Chr2g0151591 Rosa chinensis HOM05D002705 ORTHO05D009765 2.5e-29 133.7 145 48.3
Aa31LG1G24660 Aethionema arabicum HOM05D000512 ORTHO05D000861 7.2e-29 132.1 158 46.8
Ah.11g045780 Amaranthus hybridus HOM05D002705 ORTHO05D009765 7.2e-29 132.1 258 32.9
AL4G41540 Arabidopsis lyrata HOM05D002705 ORTHO05D009765 1.2e-28 131.3 155 49.0
Sopen10g003660 Solanum pennellii HOM05D002705 ORTHO05D009765 2.1e-28 130.6 213 39.0
CDE09G0375 Ceratophyllum demersum HOM05D002705 ORTHO05D009765 1.5e-26 124.4 163 40.5
PSO017G2465 Papaver somniferum HOM05D002705 ORTHO05D009765 2.0e-26 124.0 158 46.2
Os05g0582000 Oryza sativa ssp. japonica HOM05D002705 ORTHO05D009765 1.2e-23 114.8 262 30.9
unitig_62.g23106 Utricularia gibba HOM05D002705 ORTHO05D009765 7.8e-23 112.1 143 44.8
Zm00001eb297100 Zea mays HOM05D002705 ORTHO05D009765 3.3e-21 106.7 165 36.4
CAN.G1546.3 Capsicum annuum HOM05D000541 ORTHO05D000137 4.3e-21 106.3 135 45.9
ATR0681G391 Amborella trichopoda HOM05D002705 ORTHO05D009765 1.0e-19 101.7 163 36.8
Zm00001eb344730 Zea mays HOM05D002705 ORTHO05D009765 1.0e-19 101.7 157 34.4
TAR627G0068 Trochodendron aralioides HOM05D002705 ORTHO05D009765 8.9e-11 72.0 143 32.2


User provided reference genes

Program Settings