Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib264G0870 Durio zibethinus HOM05D005312 ORTHO05D006459 6.0e-231 803.9 429 100.0
Thecc.04G046000 Theobroma cacao HOM05D005312 ORTHO05D006459 6.6e-214 747.3 434 92.2
Duzib147G0684 Durio zibethinus HOM05D005312 ORTHO05D006459 8.4e-209 730.3 429 91.6
Duzib187G0698 Durio zibethinus HOM05D005312 ORTHO05D006459 1.0e-206 723.4 429 88.8
COL.COLO4_13349 Corchorus olitorius HOM05D005312 ORTHO05D006459 8.7e-206 720.3 397 91.9
Gorai.001G275400 Gossypium raimondii HOM05D005312 ORTHO05D006459 4.9e-201 704.5 430 87.7
Gohir.A07G232100 Gossypium hirsutum HOM05D005312 ORTHO05D006459 1.4e-200 703.0 430 88.4
Gohir.D07G239300 Gossypium hirsutum HOM05D005312 ORTHO05D006459 2.4e-200 702.2 430 87.9
Ciclev10015374m.g Citrus clementina HOM05D005312 ORTHO05D006459 5.0e-169 598.2 430 74.4
Dinv33289 Davidia involucrata HOM05D005312 ORTHO05D006459 1.6e-167 593.2 432 73.8
Cpa.g.sc70.78 Carica papaya HOM05D005312 ORTHO05D006459 2.6e-165 585.9 438 74.7
QL02p069878 Quercus lobata HOM05D005312 ORTHO05D006459 9.1e-163 577.4 401 75.1
Atru.chr6.2642 Acer truncatum HOM05D005312 ORTHO05D006459 1.3e-161 573.5 436 71.8
CSS0036880 Camellia sinensis var. sinensis HOM05D005312 ORTHO05D006459 1.1e-160 570.5 434 71.7
Hma1.2p1_0868F.1_g230570 Hydrangea macrophylla HOM05D005312 ORTHO05D006459 1.2e-159 567.0 430 70.7
Prupe.3G312600 Prunus persica HOM05D005312 ORTHO05D006459 8.0e-159 564.3 438 70.8
Cfa007172 Carpinus fangiana HOM05D005312 ORTHO05D006459 1.0e-158 563.9 433 71.6
CANSAT64G1152 Cannabis sativa HOM05D005312 ORTHO05D006459 1.2e-157 560.5 394 71.3
RcHm_v2.0_Chr2g0176401 Rosa chinensis HOM05D005312 ORTHO05D006459 1.2e-154 550.4 438 70.1
Actinidia37728 Actinidia chinensis HOM05D005312 ORTHO05D006459 1.3e-153 547.0 434 69.4
TWI32G0425 Tripterygium wilfordii HOM05D005312 ORTHO05D006459 1.7e-153 546.6 435 70.3
MD17G1007700 Malus domestica HOM05D005312 ORTHO05D006459 6.5e-153 544.7 402 70.1
TAR629G1483 Trochodendron aralioides HOM05D005312 ORTHO05D006459 6.5e-153 544.7 395 71.1
Peaxi162Scf00420g00087 Petunia axillaris HOM05D005312 ORTHO05D006459 5.5e-152 541.6 433 66.1
MD09G1004000 Malus domestica HOM05D005312 ORTHO05D006459 9.4e-152 540.8 390 70.5
CiPaw.03G003000 Carya illinoinensis HOM05D005312 ORTHO05D006459 1.2e-151 540.4 432 69.4
TAR371G0255 Trochodendron aralioides HOM05D005312 ORTHO05D006459 1.2e-151 540.4 433 67.9
Manes.11G077500 Manihot esculenta HOM05D005312 ORTHO05D006459 1.6e-151 540.0 438 69.6
FvH4_6g54210 Fragaria vesca HOM05D005312 ORTHO05D006459 2.1e-151 539.7 433 67.4
FAN05G1132 Fragaria x ananassa HOM05D005312 ORTHO05D006459 2.1e-151 539.7 432 66.7
FAN09G1737 Fragaria x ananassa HOM05D005312 ORTHO05D006459 2.1e-151 539.7 433 67.4
FAN14G0182 Fragaria x ananassa HOM05D005312 ORTHO05D006459 3.6e-151 538.9 433 67.4
Eucgr.G01940 Eucalyptus grandis HOM05D005312 ORTHO05D006459 5.2e-150 535.0 436 69.0
FAN02G3987 Fragaria x ananassa HOM05D005312 ORTHO05D006459 6.8e-150 534.6 433 66.7
Sabra14G0109800 Salix brachista HOM05D005312 ORTHO05D006459 6.8e-150 534.6 404 71.5
Aa31LG2G5770 Aethionema arabicum HOM05D005312 ORTHO05D006459 8.8e-150 534.3 431 69.1
ClCG05G012720 Citrullus lanatus HOM05D005312 ORTHO05D006459 1.5e-149 533.5 432 69.2
Sed0007531 Sechium edule HOM05D005312 ORTHO05D006459 2.0e-149 533.1 432 69.2
Potri.014G145900 Populus trichocarpa HOM05D005312 ORTHO05D006459 4.4e-149 531.9 404 71.3
Gohir.D10G081000 Gossypium hirsutum HOM05D005312 ORTHO05D006459 5.7e-149 531.6 431 68.0
Gorai.011G088100 Gossypium raimondii HOM05D005312 ORTHO05D006459 1.3e-148 530.4 431 68.0
CAN.G473.156 Capsicum annuum HOM05D005312 ORTHO05D006459 2.2e-148 529.6 393 67.7
Cc07_g01210 Coffea canephora HOM05D005312 ORTHO05D006459 6.3e-148 528.1 443 66.6
vmacro22240 Vaccinium macrocarpon HOM05D005312 ORTHO05D006459 6.3e-148 528.1 394 70.8
Rhsim10G0001700 Rhododendron simsii HOM05D005312 ORTHO05D006459 1.4e-147 526.9 435 68.5
Manes.04G092300 Manihot esculenta HOM05D005312 ORTHO05D006459 2.4e-147 526.2 443 67.7
Gohir.A10G070100 Gossypium hirsutum HOM05D005312 ORTHO05D006459 9.1e-147 524.2 395 69.9
Glyma.02G066000 Glycine max HOM05D005312 ORTHO05D006459 1.2e-146 523.9 436 65.6
THA.LOC104823996 Tarenaya hassleriana HOM05D005312 ORTHO05D006459 1.6e-146 523.5 435 69.2
PGSC0003DMG400020194 Solanum tuberosum HOM05D005312 ORTHO05D006459 2.7e-146 522.7 434 63.8
THA.LOC104805304 Tarenaya hassleriana HOM05D005312 ORTHO05D006459 2.7e-146 522.7 435 70.1
DCAR_002973 Daucus carota HOM05D005312 ORTHO05D006459 3.5e-146 522.3 406 66.7
Nn4g22171 Nelumbo nucifera HOM05D005312 ORTHO05D006459 5.9e-146 521.5 431 64.0
Sopen02g039150 Solanum pennellii HOM05D005312 ORTHO05D006459 5.9e-146 521.5 395 67.1
Solyc02g094480.4 Solanum lycopersicum HOM05D000001 ORTHO05D000003 7.7e-146 521.2 394 67.0
Oeu039797.1 Olea europaea HOM05D005312 ORTHO05D006459 1.3e-145 520.4 435 66.2
Phvul.004G070300 Phaseolus vulgaris HOM05D005312 ORTHO05D006459 1.7e-145 520.0 435 65.7
MELO3C014806.2 Cucumis melo HOM05D005312 ORTHO05D006459 2.9e-145 519.2 432 67.6
Sabra02G0180200 Salix brachista HOM05D005312 ORTHO05D006459 6.6e-145 518.1 397 70.8
Potri.002G236600 Populus trichocarpa HOM05D005312 ORTHO05D006459 8.6e-145 517.7 389 69.9
Glyma.16G146900 Glycine max HOM05D005312 ORTHO05D006459 1.1e-144 517.3 436 62.6
Psat1g097480 Pisum sativum HOM05D005312 ORTHO05D006459 7.2e-144 514.6 394 66.8
Migut.F00017 Erythranthe guttata HOM05D005312 ORTHO05D006459 1.6e-143 513.5 399 67.2
MSTRG.3045 Avicennia marina HOM05D005312 ORTHO05D006459 1.0e-142 510.8 434 65.4
Lj7A616T62 Lonicera japonica HOM05D005312 ORTHO05D006459 1.4e-142 510.4 399 67.9
Medtr6g033275 Medicago truncatula HOM05D005312 ORTHO05D006459 1.4e-142 510.4 394 65.7
TPR.G36663 Trifolium pratense HOM05D005312 ORTHO05D006459 1.4e-142 510.4 396 65.7
Lalb_Chr06g0173771 Lupinus albus HOM05D005312 ORTHO05D006459 1.8e-142 510.0 432 63.4
Ah.02g128920 Amaranthus hybridus HOM05D005312 ORTHO05D006459 2.3e-142 509.6 441 62.4
Lj2g0017210 Lotus japonicus HOM05D005312 ORTHO05D006459 5.2e-142 508.4 433 66.1
Aa31LG1G1910 Aethionema arabicum HOM05D005312 ORTHO05D006459 6.8e-142 508.1 434 66.4
Thhalv10004350m.g Eutrema salsugineum HOM05D005312 ORTHO05D006459 3.4e-141 505.8 431 68.2
SalBow4G2016 Salvia bowleyana HOM05D005312 ORTHO05D006459 5.7e-141 505.0 438 64.8
Lalb_Chr02g0156821 Lupinus albus HOM05D005312 ORTHO05D006459 2.8e-140 502.7 438 63.5
Sp2g15910 Schrenkiella parvula HOM05D005312 ORTHO05D006459 4.9e-140 501.9 432 69.0
EL10As7g23753 Beta vulgaris HOM05D005312 ORTHO05D006459 2.7e-138 496.1 444 63.5
CSS0020784 Camellia sinensis var. sinensis HOM05D005312 ORTHO05D006459 2.7e-138 496.1 428 65.2
Carub.0005s0483 Capsella rubella HOM05D005312 ORTHO05D006459 3.5e-138 495.7 395 66.1
AT3G26780 Arabidopsis thaliana HOM05D005312 ORTHO05D006459 7.8e-138 494.6 397 66.2
PGR083G1093 Punica granatum HOM05D005312 ORTHO05D006459 1.0e-137 494.2 440 66.6
AL5G15650 Arabidopsis lyrata HOM05D005312 ORTHO05D006459 2.3e-137 493.0 433 65.4
Sc03g0004830 Simmondsia chinensis HOM05D005312 ORTHO05D006459 1.9e-136 490.0 436 66.1
BraA02t08484Z Brassica rapa HOM05D005312 ORTHO05D006459 9.5e-136 487.6 394 66.0
CARHR013180 Cardamine hirsuta HOM05D005312 ORTHO05D006459 9.5e-136 487.6 434 64.7
BcaC03g17388 Brassica carinata HOM05D005312 ORTHO05D006459 3.6e-135 485.7 394 66.0
BolC2t11405H Brassica oleracea HOM05D005312 ORTHO05D006459 3.6e-135 485.7 394 66.0
A02p34780 Brassica napus HOM05D005312 ORTHO05D006459 6.1e-135 485.0 394 65.7
AL1G24500 Arabidopsis lyrata HOM05D005312 ORTHO05D006459 8.0e-135 484.6 436 64.2
arahy.Tifrunner.gnm1.ann1.ZY683S Arachis hypogaea HOM05D005312 ORTHO05D006459 1.8e-134 483.4 415 61.4
C02p53340 Brassica napus HOM05D005312 ORTHO05D006459 1.8e-134 483.4 394 65.5
AT1G12850 Arabidopsis thaliana HOM05D005312 ORTHO05D006459 6.8e-134 481.5 438 64.4
Nitab4.5_0025697g0010 Nicotiana tabacum HOM05D005312 ORTHO05D006459 1.5e-133 480.3 362 69.1
Sp1g11430 Schrenkiella parvula HOM05D005312 ORTHO05D006459 1.5e-133 480.3 436 63.8
BcaB07g30210 Brassica carinata HOM05D005312 ORTHO05D006459 2.0e-133 479.9 435 66.0
Aqoxy5G03173 Aquilegia oxysepala HOM05D005312 ORTHO05D006459 7.5e-133 478.0 395 64.6
arahy.Tifrunner.gnm1.ann1.JN3C7K Arachis hypogaea HOM05D005312 ORTHO05D006459 4.9e-132 475.3 419 61.3
AUR62041074 Chenopodium quinoa HOM05D005312 ORTHO05D006459 3.2e-131 472.6 394 61.9
Carub.0001s1260 Capsella rubella HOM05D005312 ORTHO05D006459 9.2e-131 471.1 432 61.6
MBI07_g40342_MAGBIO Magnolia biondii HOM05D005312 ORTHO05D006459 1.3e-129 467.2 390 62.6
PSO017G1316 Papaver somniferum HOM05D005312 ORTHO05D006459 1.5e-128 463.8 441 61.2
Thhalv10007881m.g Eutrema salsugineum HOM05D005312 ORTHO05D006459 3.3e-128 462.6 436 63.1
Oeu003422.1 Olea europaea HOM05D005312 ORTHO05D006459 9.5e-128 461.1 446 59.9
PSO478G3188 Papaver somniferum HOM05D005312 ORTHO05D006459 1.2e-127 460.7 442 60.9
SGA_v2.0_scaffold44G16946 Striga asiatica HOM05D005312 ORTHO05D006459 8.9e-126 454.5 396 62.6
CARHR147850 Cardamine hirsuta HOM05D005312 ORTHO05D006459 6.4e-124 448.4 435 62.5
BolC8t49199H Brassica oleracea HOM05D005312 ORTHO05D006459 4.1e-123 445.7 432 63.0
C08p15720 Brassica napus HOM05D005312 ORTHO05D006459 2.7e-122 443.0 432 62.3
A08p32570 Brassica napus HOM05D005312 ORTHO05D006459 4.6e-122 442.2 433 63.3
Nitab4.5_0002172g0150 Nicotiana tabacum HOM05D005312 ORTHO05D006459 1.3e-121 440.7 397 60.7
BcaB03g13161 Brassica carinata HOM05D005312 ORTHO05D006459 1.7e-121 440.3 436 63.5
HanXRQChr14g0451381 Helianthus annuus HOM05D005312 ORTHO05D006459 1.7e-121 440.3 384 60.2
Lsat_1_v5_gn_2_94460 Lactuca sativa HOM05D005312 ORTHO05D006459 5.1e-121 438.7 432 59.5
BraA08t35181Z Brassica rapa HOM05D005312 ORTHO05D006459 6.6e-121 438.3 433 62.8
AUR62037835 Chenopodium quinoa HOM05D005312 ORTHO05D006459 6.0e-114 415.2 324 64.2
GSVIVG01033003001 Vitis vinifera HOM05D005312 ORTHO05D006459 2.8e-111 406.4 314 67.2
Zm00001eb170350 Zea mays HOM05D005312 ORTHO05D006459 8.1e-111 404.8 385 57.4
CDE06G1073 Ceratophyllum demersum HOM05D005312 ORTHO05D006459 4.4e-109 399.1 393 54.7
CDE02G3855 Ceratophyllum demersum HOM05D005312 ORTHO05D006459 9.9e-109 397.9 395 56.7
Os11g0522000 Oryza sativa ssp. japonica HOM05D005312 ORTHO05D006459 1.4e-107 394.0 386 55.4
ATR0582G189 Amborella trichopoda HOM05D005312 ORTHO05D006459 1.7e-105 387.1 465 49.2
SEGI_01379 Sequoiadendron giganteum HOM05D005312 ORTHO05D006459 1.6e-98 364.0 397 49.4
ECA238G3491 Erigeron canadensis HOM05D000001 ORTHO05D000003 3.9e-89 332.8 325 56.3
Ca_26608_v3 Cicer arietinum L. HOM05D005312 ORTHO05D006459 4.3e-88 329.3 428 45.8
VMungo0464G0174 Vigna mungo HOM05D005312 ORTHO05D006459 1.3e-81 307.8 244 63.5
SEGI_20575 Sequoiadendron giganteum HOM05D005312 ORTHO05D006459 4.6e-66 256.1 307 46.6
ECA246G2144 Erigeron canadensis HOM05D005312 ORTHO05D006459 1.5e-64 251.1 265 50.6
unitig_37.g12041 Utricularia gibba HOM05D005312 ORTHO05D006459 3.3e-64 250.0 225 56.9
HPP92_008243 Vanilla planifolia HOM05D005312 ORTHO05D006459 1.4e-62 244.6 235 55.3
Pp3c21_20660 Physcomitrium patens HOM05D005312 ORTHO05D006459 1.0e-60 238.4 403 37.2
Nn3g16305 Nelumbo nucifera HOM05D005312 ORTHO05D006459 3.6e-58 229.9 208 57.7
Haze_14938 Corylus avellana HOM05D005312 ORTHO05D006459 2.8e-55 220.3 192 74.5
Actinidia19557 Actinidia chinensis HOM05D005312 ORTHO05D006459 3.1e-54 216.9 157 69.4
CSS0007293 Camellia sinensis var. sinensis HOM05D005312 ORTHO05D006459 4.1e-54 216.5 190 70.0
VMungo0464G1790 Vigna mungo HOM05D005312 ORTHO05D006459 1.5e-53 214.5 146 74.7
unitig_37.g12040 Utricularia gibba HOM05D005312 ORTHO05D006459 2.8e-47 193.7 145 69.0
CBR_g2835 Chara braunii HOM05D005312 ORTHO05D006459 1.0e-44 185.3 363 35.0
AagrBONN_evm.TU.Sc2ySwM_344.1953 Anthoceros agrestis HOM05D005312 ORTHO05D006459 8.3e-39 165.6 309 34.6
SGA_v2.0_scaffold173G39196 Striga asiatica HOM05D005312 ORTHO05D006459 2.5e-19 100.9 113 54.0
SEGI_29311 Sequoiadendron giganteum HOM05D005312 ORTHO05D006459 1.1e-14 85.5 73 54.8
CARHR120940 Cardamine hirsuta HOM05D005312 ORTHO05D006459 3.2e-14 84.0 71 64.8
PRCOL_00002808 Prasinoderma coloniale HOM05D005312 ORTHO05D006459 2.1e-10 71.2 162 34.6
Actinidia19558 Actinidia chinensis HOM05D005312 ORTHO05D006459 3.6e-10 70.5 92 46.7
C05p10420 Brassica napus HOM05D005312 ORTHO05D006459 1.5e-08 65.1 36 72.2
BolC5t29789H Brassica oleracea HOM05D005312 ORTHO05D006459 9.2e-06 55.8 32 62.5


User provided reference genes

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