Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib264G0826 Durio zibethinus HOM05D004631 ORTHO05D005223 2.8e-135 485.3 252 100.0
Duzib147G1024 Durio zibethinus HOM05D004631 ORTHO05D005223 2.2e-116 422.5 253 87.4
Thecc.04G027600 Theobroma cacao HOM05D004631 ORTHO05D005223 3.9e-105 385.2 253 80.6
Gohir.D10G085100 Gossypium hirsutum HOM05D004631 ORTHO05D005223 7.6e-101 370.9 255 77.3
Gohir.A10G160500 Gossypium hirsutum HOM05D004631 ORTHO05D005223 2.9e-100 369.0 257 76.7
Gohir.D04G079800 Gossypium hirsutum HOM05D004631 ORTHO05D005223 2.9e-100 369.0 256 78.1
Gorai.012G089800 Gossypium raimondii HOM05D004631 ORTHO05D005223 2.9e-100 369.0 256 78.1
Gorai.011G093000 Gossypium raimondii HOM05D004631 ORTHO05D005223 9.3e-99 364.0 256 76.2
COL.COLO4_29276 Corchorus olitorius HOM05D004631 ORTHO05D005223 1.5e-96 356.7 225 80.4
QL02p072911 Quercus lobata HOM05D004631 ORTHO05D005223 5.3e-94 348.2 257 69.6
Lj7A605T75 Lonicera japonica HOM05D004631 ORTHO05D005223 3.8e-92 342.0 243 74.1
Gohir.A05G341700 Gossypium hirsutum HOM05D004631 ORTHO05D005223 1.1e-91 340.5 241 77.2
Haze_14815 Corylus avellana HOM05D004631 ORTHO05D005223 3.0e-89 332.4 274 64.2
Ciclev10016175m.g Citrus clementina HOM05D004631 ORTHO05D005223 3.9e-89 332.0 286 62.9
FAN02G2863 Fragaria x ananassa HOM05D004631 ORTHO05D005223 5.1e-89 331.6 254 69.3
Hma1.2p1_0279F.1_g112270 Hydrangea macrophylla HOM05D004631 ORTHO05D005223 5.1e-89 331.6 245 69.8
Prupe.3G299600 Prunus persica HOM05D004631 ORTHO05D005223 8.7e-89 330.9 252 67.1
Rhsim08G0046200 Rhododendron simsii HOM05D004631 ORTHO05D005223 9.6e-88 327.4 245 68.2
Cfa007277 Carpinus fangiana HOM05D004631 ORTHO05D005223 1.6e-87 326.6 256 65.6
FvH4_6g52650 Fragaria vesca HOM05D004631 ORTHO05D005223 4.8e-87 325.1 254 69.3
RcHm_v2.0_Chr2g0174181 Rosa chinensis HOM05D004631 ORTHO05D005223 2.4e-86 322.8 253 69.6
CiPaw.03G050500 Carya illinoinensis HOM05D004631 ORTHO05D005223 3.1e-86 322.4 257 66.5
TWI59G0755 Tripterygium wilfordii HOM05D004631 ORTHO05D005223 4.0e-86 322.0 253 64.0
FAN05G1873 Fragaria x ananassa HOM05D004631 ORTHO05D005223 6.9e-86 321.2 255 69.0
Sabra09G0043700 Salix brachista HOM05D004631 ORTHO05D005223 2.6e-85 319.3 253 64.0
FAN14G1903 Fragaria x ananassa HOM05D004631 ORTHO05D005223 3.4e-85 318.9 255 68.6
Hma1.2p1_0227F.1_g095910 Hydrangea macrophylla HOM05D004631 ORTHO05D005223 1.3e-84 317.0 245 68.2
CANSAT64G0886 Cannabis sativa HOM05D004631 ORTHO05D005223 2.9e-84 315.8 255 65.9
FAN09G3073 Fragaria x ananassa HOM05D004631 ORTHO05D005223 2.9e-84 315.8 255 67.5
RhsimUnG0241300 Rhododendron simsii HOM05D004631 ORTHO05D005223 2.9e-84 315.8 252 64.7
Cpa.g.c34704 Carica papaya HOM05D004631 ORTHO05D005223 6.5e-84 314.7 229 72.1
GSVIVG01001850001 Vitis vinifera HOM05D004631 ORTHO05D005223 6.5e-84 314.7 232 68.1
vmacro18314 Vaccinium macrocarpon HOM05D004631 ORTHO05D005223 8.4e-84 314.3 229 69.4
Manes.07G089400 Manihot esculenta HOM05D004631 ORTHO05D005223 2.5e-83 312.8 232 69.0
TAR371G0552 Trochodendron aralioides HOM05D004631 ORTHO05D005223 3.2e-83 312.4 253 65.6
CiPaw.04G033100 Carya illinoinensis HOM05D004631 ORTHO05D005223 4.2e-83 312.0 254 63.8
CSS0019474 Camellia sinensis var. sinensis HOM05D004631 ORTHO05D005223 5.5e-83 311.6 252 64.3
CSS0019664 Camellia sinensis var. sinensis HOM05D004631 ORTHO05D005223 5.5e-83 311.6 246 66.3
CAN.G473.59 Capsicum annuum HOM05D004631 ORTHO05D005223 9.3e-83 310.8 254 62.6
PGSC0003DMG400020270 Solanum tuberosum HOM05D004631 ORTHO05D005223 9.3e-83 310.8 254 63.4
Potri.001G264500 Populus trichocarpa HOM05D004631 ORTHO05D005223 2.1e-82 309.7 253 62.8
Sabra16G0162600 Salix brachista HOM05D004631 ORTHO05D005223 2.1e-82 309.7 253 63.6
MD17G1018100 Malus domestica HOM05D004631 ORTHO05D005223 6.0e-82 308.1 254 65.7
Manes.15G156400 Manihot esculenta HOM05D004631 ORTHO05D005223 6.0e-82 308.1 233 68.7
Nn4g22438 Nelumbo nucifera HOM05D004631 ORTHO05D005223 6.0e-82 308.1 258 65.1
Atru.chr6.2487 Acer truncatum HOM05D004631 ORTHO05D005223 1.0e-81 307.4 253 64.8
Potri.009G059300 Populus trichocarpa HOM05D004631 ORTHO05D005223 1.0e-81 307.4 253 62.8
SGA_v2.0_scaffold18G08240 Striga asiatica HOM05D004631 ORTHO05D005223 1.3e-81 307.0 245 63.7
Sopen02g038460 Solanum pennellii HOM05D004631 ORTHO05D005223 1.8e-81 306.6 254 62.6
Solyc02g093820.4 Solanum lycopersicum HOM05D004631 ORTHO05D005223 2.3e-81 306.2 254 62.6
vmacro05924 Vaccinium macrocarpon HOM05D004631 ORTHO05D005223 2.3e-81 306.2 252 62.7
TAR629G3282 Trochodendron aralioides HOM05D004631 ORTHO05D005223 8.7e-81 304.3 253 66.0
Cc07_g00410 Coffea canephora HOM05D004631 ORTHO05D005223 1.1e-80 303.9 252 64.3
Aqoxy5G03556 Aquilegia oxysepala HOM05D004631 ORTHO05D005223 1.5e-80 303.5 241 67.6
MSTRG.24067 Avicennia marina HOM05D004631 ORTHO05D005223 7.4e-80 301.2 252 62.7
Migut.H00060 Erythranthe guttata HOM05D004631 ORTHO05D005223 9.7e-80 300.8 248 62.9
Eucgr.I01692 Eucalyptus grandis HOM05D004631 ORTHO05D005223 1.3e-79 300.4 256 62.9
MD09G1017300 Malus domestica HOM05D004631 ORTHO05D005223 1.3e-79 300.4 254 64.2
PGR142G2057 Punica granatum HOM05D004631 ORTHO05D005223 1.3e-79 300.4 255 62.7
AT3G27310 Arabidopsis thaliana HOM05D004631 ORTHO05D005223 1.8e-78 296.6 254 61.4
HanXRQChr17g0549531 Helianthus annuus HOM05D004631 ORTHO05D005223 4.1e-78 295.4 233 63.9
AUR62032242 Chenopodium quinoa HOM05D004631 ORTHO05D005223 9.0e-78 294.3 252 63.9
Glyma.19G082400 Glycine max HOM05D004631 ORTHO05D005223 9.0e-78 294.3 259 62.2
PSO063G4908 Papaver somniferum HOM05D004631 ORTHO05D005223 9.0e-78 294.3 245 63.3
PSO782G2324 Papaver somniferum HOM05D004631 ORTHO05D005223 9.0e-78 294.3 245 62.4
TWI23G0469 Tripterygium wilfordii HOM05D004631 ORTHO05D005223 9.0e-78 294.3 253 60.5
DCAR_021756 Daucus carota HOM05D004631 ORTHO05D005223 1.5e-77 293.5 236 64.4
Carub.0005s0558 Capsella rubella HOM05D004631 ORTHO05D005223 4.5e-77 292.0 251 61.4
Actinidia05943 Actinidia chinensis HOM05D000918 ORTHO05D000791 1.7e-76 290.0 228 65.4
Glyma.16G063100 Glycine max HOM05D004631 ORTHO05D005223 2.2e-76 289.7 261 61.3
AUR62011927 Chenopodium quinoa HOM05D004631 ORTHO05D005223 2.9e-76 289.3 252 63.5
ClCG11G006850 Citrullus lanatus HOM05D004631 ORTHO05D005223 5.0e-76 288.5 280 55.4
Thhalv10004822m.g Eutrema salsugineum HOM05D004631 ORTHO05D005223 8.5e-76 287.7 253 58.5
CARHR148590 Cardamine hirsuta HOM05D004631 ORTHO05D005223 1.4e-75 287.0 253 59.7
DCAR_011290 Daucus carota HOM05D004631 ORTHO05D005223 1.9e-75 286.6 234 65.4
Lsat_1_v5_gn_0_32720 Lactuca sativa HOM05D004631 ORTHO05D005223 3.2e-75 285.8 246 62.2
Sed0025843 Sechium edule HOM05D004631 ORTHO05D005223 9.4e-75 284.3 255 57.6
EL10Ac5g10455 Beta vulgaris HOM05D004631 ORTHO05D005223 1.6e-74 283.5 253 60.9
Lalb_Chr14g0363051 Lupinus albus HOM05D004631 ORTHO05D005223 1.6e-74 283.5 246 61.0
Lsat_1_v5_gn_4_185741 Lactuca sativa HOM05D004631 ORTHO05D005223 2.7e-74 282.7 253 60.9
arahy.Tifrunner.gnm1.ann1.5W0L45 Arachis hypogaea HOM05D004631 ORTHO05D005223 7.9e-74 281.2 257 61.1
HanXRQChr15g0487081 Helianthus annuus HOM05D004631 ORTHO05D005223 7.9e-74 281.2 256 61.3
BcaC06g31006 Brassica carinata HOM05D004631 ORTHO05D005223 1.0e-73 280.8 255 59.6
MSTRG.3110 Avicennia marina HOM05D004631 ORTHO05D005223 1.8e-73 280.0 252 59.5
Oeu050430.2 Olea europaea HOM05D004631 ORTHO05D005223 1.8e-73 280.0 286 54.5
arahy.Tifrunner.gnm1.ann1.NS464T Arachis hypogaea HOM05D004631 ORTHO05D005223 2.3e-73 279.6 257 60.7
AL5G16540 Arabidopsis lyrata HOM05D004631 ORTHO05D005223 3.0e-73 279.3 229 62.4
Sed0000329 Sechium edule HOM05D004631 ORTHO05D005223 1.1e-72 277.3 255 58.0
Aa31LG2G5340 Aethionema arabicum HOM05D004631 ORTHO05D005223 2.0e-72 276.6 268 56.0
BcaC06g33833 Brassica carinata HOM05D004631 ORTHO05D005223 2.0e-72 276.6 261 57.9
BolC7t44152H Brassica oleracea HOM05D004631 ORTHO05D005223 2.0e-72 276.6 261 57.9
Dinv25693 Davidia involucrata HOM05D004631 ORTHO05D005223 1.7e-71 273.5 201 68.2
Lj2g0014181 Lotus japonicus HOM05D004631 ORTHO05D005223 1.7e-71 273.5 257 59.1
MBI05_g32279_MAGBIO Magnolia biondii HOM05D004631 ORTHO05D005223 3.7e-71 272.3 230 62.6
C07p36360 Brassica napus HOM05D004631 ORTHO05D005223 4.8e-71 271.9 250 58.0
Peaxi162Scf00420g00342 Petunia axillaris HOM05D004631 ORTHO05D005223 4.8e-71 271.9 251 57.8
ECA232G0338 Erigeron canadensis HOM05D004631 ORTHO05D005223 8.2e-71 271.2 255 59.2
Sp2g16470 Schrenkiella parvula HOM05D004631 ORTHO05D005223 1.1e-70 270.8 253 56.5
Peaxi162Scf00420g00345 Petunia axillaris HOM05D004631 ORTHO05D005223 2.4e-70 269.6 242 57.4
A06p41300 Brassica napus HOM05D004631 ORTHO05D005223 6.9e-70 268.1 259 55.6
BraA06t27055Z Brassica rapa HOM05D004631 ORTHO05D005223 6.9e-70 268.1 259 55.6
SalBow1G3920 Salvia bowleyana HOM05D004631 ORTHO05D005223 9.1e-70 267.7 285 52.6
ECA246G0472 Erigeron canadensis HOM05D004631 ORTHO05D005223 2.0e-69 266.5 241 59.3
Ca_04405_v3 Cicer arietinum L. HOM05D004631 ORTHO05D005223 2.6e-69 266.2 257 59.5
CsaV3_6G001200 Cucumis sativus L. HOM05D004631 ORTHO05D005223 2.6e-69 266.2 230 59.1
SalBow1G0328 Salvia bowleyana HOM05D004631 ORTHO05D005223 5.9e-69 265.0 285 52.3
TPR.G29003 Trifolium pratense HOM05D004631 ORTHO05D005223 7.7e-69 264.6 253 56.9
Psat1g084240 Pisum sativum HOM05D004631 ORTHO05D005223 1.3e-68 263.8 253 57.3
Ah.11g049900 Amaranthus hybridus HOM05D000470 ORTHO05D000348 2.2e-68 263.1 228 59.6
Sc03g0007030 Simmondsia chinensis HOM05D004631 ORTHO05D005223 5.0e-68 261.9 192 70.3
CSS0005098 Camellia sinensis var. sinensis HOM05D004631 ORTHO05D005223 9.4e-67 257.7 190 69.5
Dinv33383 Davidia involucrata HOM05D004631 ORTHO05D005223 2.3e-65 253.1 164 75.0
Phvul.008G148800 Phaseolus vulgaris HOM05D004631 ORTHO05D005223 1.1e-64 250.8 259 55.2
unitig_62.g23368 Utricularia gibba HOM05D004631 ORTHO05D005223 1.1e-64 250.8 227 57.3
VMungo1383G3654 Vigna mungo HOM05D004631 ORTHO05D005223 1.1e-64 250.8 230 59.1
Lj1g0026695 Lotus japonicus HOM05D004631 ORTHO05D005223 3.1e-62 242.7 264 51.9
ATR0824G076 Amborella trichopoda HOM05D004631 ORTHO05D005223 8.0e-58 228.0 234 54.3
HPP92_028037 Vanilla planifolia HOM05D004631 ORTHO05D005223 1.0e-57 227.6 236 53.0
Nitab4.5_0001863g0070 Nicotiana tabacum HOM05D004631 ORTHO05D005223 5.2e-57 225.3 227 56.4
MELO3C008218.2 Cucumis melo HOM05D004631 ORTHO05D005223 9.7e-56 221.1 171 62.6
Oeu058758.2 Olea europaea HOM05D004631 ORTHO05D005223 9.7e-56 221.1 169 65.1
Medtr6g023080 Medicago truncatula HOM05D004631 ORTHO05D005223 5.3e-54 215.3 205 55.1
Ciclev10003548m.g Citrus clementina HOM05D004631 ORTHO05D005223 1.5e-51 207.2 249 52.2
Os04g0485200 Oryza sativa ssp. japonica HOM05D004631 ORTHO05D005223 9.4e-51 204.5 229 49.3
Medtr6g022770 Medicago truncatula HOM05D004631 ORTHO05D005223 8.8e-49 198.0 176 60.2
Zm00001eb079230 Zea mays HOM05D004631 ORTHO05D005223 7.5e-48 194.9 264 44.7
TPR.G2332 Trifolium pratense HOM05D004631 ORTHO05D005223 3.7e-47 192.6 165 58.8
Zm00001eb425170 Zea mays HOM05D004631 ORTHO05D005223 4.8e-47 192.2 263 45.6
Mapoly0078s0021 Marchantia polymorpha HOM05D004631 ORTHO05D005223 2.7e-45 186.4 234 43.6
Prupe.8G176800 Prunus persica HOM05D004631 ORTHO05D005223 2.9e-44 183.0 123 71.5
Medtr0531s0010 Medicago truncatula HOM05D004631 ORTHO05D005223 8.5e-44 181.4 168 57.1
MD10G1138200 Malus domestica HOM05D004631 ORTHO05D005223 4.0e-41 172.6 129 64.3
Potri.001G337533 Populus trichocarpa HOM05D004631 ORTHO05D005223 2.2e-39 166.8 214 48.6
Nitab4.5_0008718g0050 Nicotiana tabacum HOM05D004631 ORTHO05D005223 7.0e-38 161.8 202 51.0
Actinidia35792 Actinidia chinensis HOM05D004631 ORTHO05D005223 1.5e-35 154.1 122 67.2
Pp3c7_140 Physcomitrium patens HOM05D004631 ORTHO05D005223 6.8e-33 145.2 224 42.4
SMO199G0125 Selaginella moellendorffii HOM05D004631 ORTHO05D005223 4.1e-30 136.0 230 35.2
Eucgr.L03061 Eucalyptus grandis HOM05D004631 ORTHO05D005223 9.2e-30 134.8 88 68.2
FAN24G1590 Fragaria x ananassa HOM05D004631 ORTHO05D005223 6.6e-28 128.6 120 55.8
FAN27G0193 Fragaria x ananassa HOM05D004631 ORTHO05D005223 8.6e-28 128.3 120 55.0
FvH4_2g09210 Fragaria vesca HOM05D004631 ORTHO05D005223 1.9e-27 127.1 119 55.5
Medtr4g103350 Medicago truncatula HOM05D004631 ORTHO05D005223 1.9e-27 127.1 148 48.6
HPP92_027613 Vanilla planifolia HOM05D004631 ORTHO05D005223 1.0e-25 121.3 116 55.2
BcaC04g23906 Brassica carinata HOM05D004631 ORTHO05D005223 1.8e-25 120.6 169 44.4
A09p03370 Brassica napus HOM05D004631 ORTHO05D005223 2.3e-25 120.2 119 56.3
BraA09t35975Z Brassica rapa HOM05D004631 ORTHO05D005223 2.3e-25 120.2 119 56.3
BraA09t35976Z Brassica rapa HOM05D004631 ORTHO05D005223 2.3e-25 120.2 119 56.3
RcHm_v2.0_Chr6g0265061 Rosa chinensis HOM05D004631 ORTHO05D005223 8.9e-17 91.7 116 50.0
BcaB04g19435 Brassica carinata HOM05D002252 ORTHO05D002451 1.2e-16 91.3 102 52.9
Zm00001eb055680 Zea mays HOM05D004631 ORTHO05D005223 1.6e-13 80.9 106 44.3
Sabra16G0218300 Salix brachista HOM05D004631 ORTHO05D005223 3.9e-12 76.3 149 35.6
Actinidia36166 Actinidia chinensis HOM05D004631 ORTHO05D005223 1.6e-10 70.9 57 66.7
SMO361G0265 Selaginella moellendorffii HOM05D022709 ORTHO05D005223 1.4e-09 67.8 246 26.0
SMO361G0508 Selaginella moellendorffii HOM05D022709 ORTHO05D005223 1.8e-09 67.4 192 27.6
PRCOL_00003248 Prasinoderma coloniale HOM05D004631 ORTHO05D005223 5.2e-09 65.9 145 28.3
HPP92_027614 Vanilla planifolia HOM05D004631 ORTHO05D005223 1.5e-08 64.3 108 38.0
C09p03590 Brassica napus HOM05D004631 ORTHO05D005223 4.9e-07 59.3 35 74.3


User provided reference genes

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